Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dichanthelium_20oligosanthes_20[genbank_20GCA_5F001633215.2_202016- 09-29] 17,436 sequences; 589,166,415 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq11882 132 8e-27 seq14140 127 3e-25 seq8488 125 1e-24 seq10928 123 4e-24 seq3740 114 2e-21 seq10559 111 2e-20 seq11712 105 1e-18 seq9221 102 1e-17 seq1141 87.8 3e-13 >seq11882 Length=409133 Score = 132 bits (146), Expect = 8e-27 Identities = 175/243 (72%), Gaps = 0/243 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||| || |||| || || || |||||||| || ||||||||||| || || Sbjct 46076 CGCCAAGCGCCACCGCAAGGTGCTCCGCGACAACATCCAGGGCATCACCAAGCCGGCGAT 46135 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| | ||||| | | || || |||||||| |||| || | |||| || |||| Sbjct 46136 CCGGAGGCTGGCGAGGAGGGGCGGCGTCAAGCGCATCTCCGGCCTCATCTACGAGGAGAC 46195 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | || | |||||||||||| ||| ||| |||| || || || ||| ||||| Sbjct 46196 CCGCGGCGTGCTCAAGATCTTCCTCGAGAACGTCATCCGCGACGCCGTCACCTACACCGA 46255 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || ||||| |||||| ||||||| |||||||||| | || || || || Sbjct 46256 GCACGCCCGCCGCAAGACCGTCACCGCCATGGACGTCGTCTATGCGCTCAAGCGCCAGGG 46315 Query 16672 CCG 16674 ||| Sbjct 46316 CCG 46318 >seq14140 Length=25658 Score = 127 bits (140), Expect = 3e-25 Identities = 176/244 (72%), Gaps = 2/244 (1%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||| ||||| || |||| | || || || || |||||||| || ||||||||||| || | Sbjct 16086 CGCGAAGCGCCACCGCAAGGTC-CTCCGCGACAACATCCAGGGCATCACCAAGCCGGCGA 16028 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 |||| | ||||| || | || || || ||||| |||| || || |||| || |||| Sbjct 16027 TCCGGAGGCTGGCGCGCAGGGGCGGCGTGAAGCGCATCTCCGGGCTGATCTACGAGGAGA 15968 Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCG 16610 || | || | |||||||||||| ||| ||| |||| || || || ||| || | Sbjct 15967 CCCGCGGCGTGCTCAAGATCTTCCTCGAGAACGTCATCCGCGACGCCGTCACCTACACGG 15908 Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAG 16670 ||||||| || ||||| || ||| ||||||| ||||||| || | || || || | Sbjct 15907 AGCACGCCCGCCGCAAGACCGTTACCGCCATGGACGTCGTCTACGCGCTCAAGCGCCAGG 15848 Query 16671 GCCG 16674 |||| Sbjct 15847 GCCG 15844 >seq8488 Length=81838 Score = 125 bits (138), Expect = 1e-24 Identities = 171/239 (72%), Gaps = 0/239 (0%) Strand=Plus/Minus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 || || || |||||||| || ||||||||||| || ||||| | ||||| | | || Sbjct 33875 CTCCGCGACAACATCCAGGGGATCACCAAGCCGGCGATCCGGAGGCTGGCCAGGAGGGGC 33816 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 || |||||||| |||| || | |||| || |||| || | || | ||||||||| Sbjct 33815 GGCGTCAAGCGCATCTCGGGGCTCATCTACGAGGAGACCCGCGGCGTGCTCAAGATCTTC 33756 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 ||| ||| ||| |||| || || || ||| ||||||||||| | || ||||| ||| Sbjct 33755 CTCGAGAACGTCATCCGCGACGCCGTCACCTACACCGAGCACGCCAGGCGCAAGACCGTC 33696 Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGG 16692 ||| ||||||| ||||||| || | || || || || || | | || || ||||| Sbjct 33695 ACCGCCATGGACGTCGTCTACGCCCTCAAGCGCCAGGGACGCACCCTCTACGGATTTGG 33637 >seq10928 Length=48180 Score = 123 bits (136), Expect = 4e-24 Identities = 173/243 (71%), Gaps = 0/243 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||| || |||| || || || |||||||| || ||||||||||| || || Sbjct 44614 CGCGAAGCGCCACCGCAAGGTGCTGCGCGACAACATCCAGGGTATCACCAAGCCGGCGAT 44673 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || ||||| | | || || || ||||| |||| || | |||| || |||| Sbjct 44674 CCGGCGGCTGGCGAGGAGGGGCGGCGTGAAGCGCATCTCCGGGCTCATCTACGAGGAGAC 44733 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | || | |||||||||||| ||| ||| |||| || || || || ||||| Sbjct 44734 CCGCGGCGTGCTCAAGATCTTCCTCGAGAACGTCATCCGCGACGCCGTCACGTACACCGA 44793 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || ||||| |||||| ||||||| ||||||| || | || || || || Sbjct 44794 GCACGCCCGCCGCAAGACCGTCACCGCCATGGACGTCGTCTACGCGCTCAAGCGCCAGGG 44853 Query 16672 CCG 16674 ||| Sbjct 44854 CCG 44856 >seq3740 Length=112948 Score = 114 bits (126), Expect = 2e-21 Identities = 171/243 (70%), Gaps = 0/243 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||| ||||| | || || || |||||||| || ||||| ||||| || || Sbjct 54910 CGCCAAGCGCCATCGGAAGGTGCTCCGCGACAACATCCAGGGCATCACGAAGCCGGCGAT 54969 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| | ||||| | | || || || ||||| |||| || || |||| || |||| Sbjct 54970 CCGAAGGCTGGCGAGGAGGGGCGGCGTGAAGCGCATCTCCGGGCTGATCTACGAGGAGAC 55029 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | || | |||||||||||| ||| ||| |||| || || || ||| || || Sbjct 55030 CCGCGGCGTGCTCAAGATCTTCCTCGAGAACGTCATCCGCGACGCCGTCACCTACACGGA 55089 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || ||||| |||||| ||||||| |||| || || | || || || || Sbjct 55090 GCACGCCCGTCGCAAGACCGTCACCGCCATGGACGTCGTGTACGCGCTCAAGCGCCAGGG 55149 Query 16672 CCG 16674 ||| Sbjct 55150 CCG 55152 >seq10559 Length=162660 Score = 111 bits (122), Expect = 2e-20 Identities = 181/261 (69%), Gaps = 0/261 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||| || |||| || || || |||||||| || ||||| ||||| || || Sbjct 98916 CGCCAAGCGCCACCGCAAGGTGCTCCGCGACAACATCCAGGGCATCACGAAGCCGGCGAT 98975 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 || | ||||| | | || || || ||||| |||| || | |||| || |||| Sbjct 98976 TCGGAGGCTGGCGAGGAGGGGCGGCGTGAAGCGCATCTCCGGGCTCATCTACGAGGAGAC 99035 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | || | |||||||||||| ||| ||| |||| || || || ||| || || Sbjct 99036 CCGCGGCGTGCTCAAGATCTTCCTCGAGAACGTCATCCGCGACGCCGTCACCTACACGGA 99095 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || ||||| |||||| ||||||| ||||||| || | || || || || Sbjct 99096 GCACGCCCGCCGCAAGACCGTCACCGCCATGGACGTCGTCTACGCGCTTAAGCGCCAGGG 99155 Query 16672 CCGTAAGATTTATGGTTTTGG 16692 ||| | | || || ||||| Sbjct 99156 CCGCACCCTCTACGGATTTGG 99176 >seq11712 Length=41189 Score = 105 bits (116), Expect = 1e-18 Identities = 133/183 (73%), Gaps = 0/183 (0%) Strand=Plus/Minus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 || || || |||||||| || ||||||||||| || ||||| | ||||| | | || Sbjct 40270 CTCCGCGACAACATCCAGGGCATCACCAAGCCGGCGATCCGGAGGCTGGCGAGGAGGGGC 40211 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 ||||| ||||| |||| || || ||||||| |||| || | || | ||||||||| Sbjct 40210 GGAGTGAAGCGCATCTCCGGCCTGATCTATGAGGAGACCCGCGGCGTGCTCAAGATCTTC 40151 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 ||| ||| ||| |||| || || || ||| || |||||||| || ||||| ||| Sbjct 40150 CTCGAGAACGTCATCCGCGACGCCGTCACCTACACGGAGCACGCCCGCCGCAAGACCGTC 40091 Query 16634 ACC 16636 ||| Sbjct 40090 ACC 40088 >seq9221 Length=69231 Score = 102 bits (112), Expect = 1e-17 Identities = 170/243 (70%), Gaps = 2/243 (1%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTT-CGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||| ||||| ||||||| || | || || || ||||| ||||| ||||||||||| | | Sbjct 5928 CGCCAAGCGGCATCGCA-ATGTGTTGCGCGACAACATACAAGGCATCACCAAGCCGACCA 5986 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 |||| | | || || | ||||| ||||||| |||| || | |||| || |||| Sbjct 5987 TCCGGAGGTTAGCGAGTAGGGGTGGCATCAAGCGCATCTCGGGGCTCATCTACGAGGAGA 6046 Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCG 16610 | | || | ||| |||||||| ||| | || ||| || | | ||| || | Sbjct 6047 CCCACGGCGTGCTCAAGGTCTTCCTCGAGAACATTGTCCGCGACACGATAATCTACACTG 6106 Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAG 16670 ||||||| || |||||||||||| ||||||| ||||||| || | | || |||| Sbjct 6107 AGCACGCCCGCCGCAAGACTGTCACCGTCATGGATGTCGTCTACGCGCTCGAGCGCCAAG 6166 Query 16671 GCC 16673 ||| Sbjct 6167 GCC 6169 >seq1141 Length=8037 Score = 87.8 bits (96), Expect = 3e-13 Identities = 133/187 (71%), Gaps = 2/187 (1%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||| |||||||| |||| | || || || || |||||||| || ||||| ||||| || | Sbjct 5646 CGCGAAGCGTCACCGCAAGGTC-CTCCGCGACAACATCCAGGGCATCACGAAGCCGGCGA 5588 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 |||| | ||||| | | || || || ||||| | || || | |||| || |||| Sbjct 5587 TCCGGAGGCTGGCGAGGAGGGGCGGCGTGAAGCGCATATCGGGGCTCATCTACGAGGAGA 5528 Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCG 16610 || | || | |||||||||||| ||| ||| |||| || || || ||| || | Sbjct 5527 CCCGCGGCGTGCTCAAGATCTTCCTCGAGAACGTCATCCGCGACGCCGTCACCTACACGG 5468 Query 16611 AGCACGC 16617 ||||||| Sbjct 5467 AGCACGC 5461 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79059258143148