Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dichanthelium_20oligosanthes_20[genbank_20GCA_5F001633215.2_202016- 09-29] 17,436 sequences; 589,166,415 total letters Query= NC_006820.1 Length=196280 Score E Sequences producing significant alignments: (Bits) Value seq16913 383 2e-101 seq12982 271 1e-67 seq10113 228 1e-54 seq666 197 2e-45 seq12572 111 2e-19 seq8160 107 2e-18 >seq16913 Length=117496 Score = 383 bits (424), Expect = 2e-101 Identities = 562/789 (71%), Gaps = 36/789 (5%) Strand=Plus/Minus Query 135365 TGGGAACAGTTCTGCGAGTGGGTTACCAGCACCGACAACCGCCTCTATGTGGGTTGGTTT 135424 |||| || |||||| | ||| | || |||||||| ||||| || || | || ||||| Sbjct 95230 TGGGGTCACTTCTGCAACTGGATAACTAGCACCGAAAACCGTCTTTACATCGGATGGTTC 95171 Query 135425 GGAACGCTGATGATTCCTACTCTTCT----CGCAGCTGCTATCTGCTTTATTGTTGCTTT 135480 || ||||||| | ||| ||| | |||| || | || | ||||| | || || Sbjct 95170 GGTGTTTTGATGATCCGTAC-CTTATTAACCGCAACTTCCATAT---TTATTATCGCCTT 95115 Query 135481 CATCGCTGCACCTCCCGTCGATATTGACGGCATCCGCGAACCTGTTGCTGGTTCTCTAAT 135540 ||||||||| ||||| || |||||||| || || || || |||||| || ||||| || | Sbjct 95114 CATCGCTGCTCCTCCGGTAGATATTGATGGTATTCGTGAGCCTGTTTCTAGTTCTTTACT 95055 Query 135541 GTACGGAAATAACATCATCTCTGGTGCTGTTATCCCTTCTAGCAAC-------------- 135586 || |||| || || || ||||||||| |||| ||| | || ||| Sbjct 95054 TTATAGAAACAATATTATATCTGGTGCTATTATTCCTGC-AGAAACTATTATTCCTACTT 94996 Query 135587 -----GCCATCGGCCTTCACTTCTATCCCATCTGGGAAGCTGCTTCTCTTGATGAGTGGC 135641 || ||||| | || || || || || ||| || |||| ||| ||||||| ||| Sbjct 94995 CTGTGGCAATCGGATTGCATTTTTACCCAATTTGGAAAACTGCATCTGTTGATGAATGGT 94936 Query 135642 TATATAATGGTGGTCCTTATCAACTAGTGGTCTTCCACTTCCTTATCGGTGTCTTCTCTT 135701 |||| ||| ||||||||| | | ||| | || | | || | | ||||| | || Sbjct 94935 TATAAAATTGTGGTCCTTCTGAGCTAATTGTTCTATATTTTTTACTTGGTGTAGCTTGTT 94876 Query 135702 ACATGGGTCGCGAGTGGG-AACTCTCTTACCGACTGGGTATGCGCCCTTGGATTTGTGTC 135760 | |||||||| ||||||| |||| || ||| ||||||| ||||||||||||| | | Sbjct 94875 ATATGGGTCGTGAGTGGGGAACTTAGTTTCCGTCTGGGTACGCGCCCTTGGATTGCTATT 94816 Query 135761 GCTTACTCAGCCCCTGTTGCCGCTGCTACTGCTGTTTTCCTGGTCTACCCCTTTGGACAA 135820 || || ||||| ||| |||| ||||||| |||||||||| |||| ||| | |||| ||| Sbjct 94815 GCATATTCAGCTCCT-TTGCAGCTGCTAGTGCTGTTTTCTTGGTTTACTCTATTGGTCAA 94757 Query 135821 GGTTCTTTCAGTGATGGTATGCCGCTTGGCATTTCTGGAACTTTTAACTACATGCTTGTT 135880 || |||| |||||| |||| | || || ||||| | ||| |||| || |||| Sbjct 94756 GGGAGTTTCTCCGATGGTGTGCCTTTAGGAATATCTGGTA-TTTCAACTTTATAATTGTA 94698 Query 135881 TTCCAGGCAGAACACAACATTCTCATGCATCCTTTCCACATGTTGGGAGTTGCTGGGGTC 135940 ||||||| ||| |||||||| || |||||| | || |||||||| || | ||||| || Sbjct 94697 TTCCAGGTAGAGCACAACATCCTTATGCATTCATTTCACATGTTAGGTATAGCTGGTGTA 94638 Query 135941 TTCGGTGGTTCTCTGTTCTCTGCTATGCATGGATCTCTTGTCA-CCTCTAGTCTTGTACG 135999 ||||| |||||| ||| | ||||||||| || |||| || |||||||| | | | Sbjct 94637 TTCGGCGGTTCT---TTCAGCGTTATGCATGGTTC-CTTGGCAACCTCTAGTTTGATCAG 94582 Query 136000 TGAGACGACTGAGGTAGAATCCCAGAACTATGGTTACAAGTTCGGTCAAGAAGAAGAGAC 136059 || || ||||| || || || | |||||||| || ||||||||||||||||| Sbjct 94581 GGAAACCACTGAAAATGAGTCTGCTAATGAAGGTTACAAATTTGGTCAAGAAGAAGAGAC 94522 Query 136060 TTACAACATTGTTGCTGCTCATGGTTACTTCGGTCGTCTGATCTTCCAATATGCGTCGTT 136119 | || || || |||||||| ||||| || ||||| | ||||| |||||||| | || Sbjct 94521 ATGTAATATCGTGGCTGCTCACGGTTATTTTGGTCGATTAATCTTTCAATATGCTACTTT 94462 Query 136120 CAACAACTC 136128 ||||||||| Sbjct 94461 CAACAACTC 94453 >seq12982 Length=32303 Score = 271 bits (300), Expect = 1e-67 Identities = 363/497 (73%), Gaps = 12/497 (2%) Strand=Plus/Plus Query 135374 TTCTGCGAGTGGGTTACCAGCACCGACAACCGCCTCTATGTGGGTTGGTTTGGAACGCTG 135433 |||||| | | | | || |||||||| |||| || || | || |||||||| || Sbjct 473 TTCTGCAACTAGATAACTAGCACCGAACACCGTCTTTACATCGGATGGTTTGGTGTTTTG 532 Query 135434 ATGATTCCTACTCTTCTCG-CAGCTGCTATCTGCTTTATTGTTGCTTTCATCGCTGCACC 135492 ||||| ||||| ||| | | | || || | ||||| | | ||||||||||| || Sbjct 533 ATGATCCCTAC-CTTATTGACCGCAACTTCCGTACTTATTATCACCTTCATCGCTGCTCC 591 Query 135493 TCCCGTCGATATTGACGGCATCCGCGAACCTGTTGCTGGTTCTCTAATGTACGGAAATAA 135552 ||| || |||||||| || || || || |||||| |||||||| |||| || ||||| | Sbjct 592 TCCAGTAGATATTGATGGTATTCGTGAGCCTGTTTCTGGTTCTTTAATTTATGGAAACAG 651 Query 135553 CATCATCTCTGGTGCTGTTATCCCTTCT--AGCAACGCCATCGGCCTTCACTTCTATCCC 135610 || |||||||||||| |||| ||| || | ||| ||||| | || || || || Sbjct 652 TATTATCTCTGGTGCTATTATTCCTACTTATGTGACG--ATCGGATTGCATTTTTACCCA 709 Query 135611 ATCTGGGAAGCTGCTTCTCTTGATGAGTGGCTATATAATGGTGGTCCTTATCAACTAGTG 135670 || ||| ||||||| || ||||||| ||| |||| ||||| ||||||||| | ||| | Sbjct 710 ATTTGGAAAGCTGCATCCGTTGATGAATGGTTATACAATGGCGGTCCTTATGACCTAATT 769 Query 135671 GTCTTCCACTTCCTTATCGGTGTCTTCTCTTACATGGGTCGCGAGTGGGAACTCTCTTAC 135730 || | || ||| | | ||||| | ||| |||| ||| || |||||||| || | Sbjct 770 GTTCTACATTTCTTACTTGGTGTAGCTTGTTATATGGATCGTGACTGGGAACTTAGTTTC 829 Query 135731 CGACTGGGTATGCGCCCTTGGATTTGTGTCGCTTACTCAGCCCCTGTTGCCGCTGCTACT 135790 | ||||||||||||| ||||||| ||| || || ||||| |||||||| | ||||||| Sbjct 830 CATCTGGGTATGCGCCTTTGGATTGTTGTTGCATATTCAGCTCCTGTTGCAGTTGCTACT 889 Query 135791 GCTGTTTTCCTGGTCTACCCCTTTGGACAAG---GTTCTTTCAGTGATGGTATGCCGCTT 135847 ||| ||||| || | ||||| |||| |||| ||| |||| |||||||||||| | Sbjct 890 GCTATTTTCTTGATTTACCCTATTGGTCAAGAAAGTT-TTTC--TGATGGTATGCCTTTA 946 Query 135848 GGCATTTCTGGAACTTT 135864 || || ||||| ||||| Sbjct 947 GGAATATCTGGTACTTT 963 >seq10113 Length=56568 Score = 228 bits (252), Expect = 1e-54 Identities = 468/690 (68%), Gaps = 13/690 (2%) Strand=Plus/Minus Query 137901 TTTGTATTTGTGGGTTGGTCTGGACTACTACTTTTTCCCACTGCTTATTTGGCCCTTGGT 137960 ||||| ||||| | |||||||| ||| | || ||||| ||||||||| || | || Sbjct 48533 TTTGTTTTTGTATGATGGTCTGGCCTATTGCTCTTTCCTTGTGCTTATTTTGCTTTAGGG 48474 Query 137961 GGCTGGCTTACTGGCACAACGTTTGTTACAAGCTGGTACACCCACGGGTTGGCGTCTAGT 138020 || ||| |||| || || || ||||| || ||||| ||||| || |||| |||| Sbjct 48473 GGTTGGTTTACAGGRACTACTTTTGTAACTTCTTGGTATACCCATGGATTGGA---TAGT 48417 Query 138021 T---ATCTTGAAGGCGCTAATTTCCTCACAGCAGCTGTTTCGACTCCTGCTGATGCTATG 138077 | || | ||||| |||||| | ||||| || ||| ||||||||| || | | Sbjct 48416 TCCTATTTGGAAGGATGCAATTTCTTAACAGCGGCGGTTATCACTCCTGCTAATAGTTTA 48357 Query 138078 GGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTCTCAAGGAGATATCGTCCGCTGGTTC 138137 | || ||| | | ||||| ||||| | || || || ||| | || || | Sbjct 48356 GCACACTCTTTGTTACTACTATGGGGCCTGGAAGAACAGGGGGATTTTACTCGTTGATGT 48297 Query 138138 CAACTTGGGGGACTCTGGACTTTTGTGGCGCTCCACGGGGCCTTTAGTCTGATTGGATTC 138197 ||| | || || || ||||||||||| || ||||| ||||| |||| || || || ||| Sbjct 48296 CAATTAGGTGGTCTGTGGACTTTTGTCGCTCTCCATGGGGCTTTTATGCTAATAGGTTTC 48237 Query 138198 ATGCTTCGCCAGTTTGAGATCTCTC-GTCTGGTAGGCA--TCCGTCCCTACAACGCAATC 138254 ||| | || || ||||| ||| ||||| | || | || || || || ||||| Sbjct 48236 ATGTTACGTCAATTTGAACATGCTCAGTCTGTT---CAATTGCGGCCTTATAATGCAATT 48180 Query 138255 GCATTCTCTGGTCCCATCGCTG-TGTTCGTCAGCGTGTTCCTGATGTATCCTTTGGGTCA 138313 |||||||| |||| | | || | || || || ||||| | ||||| |||| || Sbjct 48179 TCATTCTCTAGTCCAACCATTGTTTTTTGTTTTTGTATTCCTTGTTTATCCAATGGGACA 48120 Query 138314 ATCCAGTTGGTTCTTTGCTCCCTCCTTTGGTGTGGCAGCAATCTTCCGATTCCTGTTGTT 138373 ||| ||| |||||||| | ||||| | | || || || | |||| | | || Sbjct 48119 ATCTGGTTAGTTCTTTGTGCTGAGTTTTGGCATAGAAGTTATATTTCAATTCATCCTTTT 48060 Query 138374 CCTTCAGGGTTTCCATAACTGGACCCTCAACCCCTTTCATATGATGGGCGTAGCAGGTAT 138433 | | || || || | ||| ||||| | ||||| |||||||||||||| || || || | Sbjct 48059 CTTCCAAGGATTTCCTAATTGGACGTTAAACCCATTTCATATGATGGGGGTTGCCGGAGT 48000 Query 138434 TCTTGGTGGTGCTCTGCTCTGTGCTATTCATGGTGCTACAGTAGAAAATACTTTGTATGA 138493 | || | |||||||| || |||| ||||| ||||| ||||||| ||| | | | Sbjct 47999 ATTAGGCGCAGCTCTGCTATGCTCTATCCATGGGGCTACCATAGAAAACACTCTATTCAA 47940 Query 138494 AGATGGCGAACAATCAAATACTTTTAAAGCATTTGAACCTACTCAAGAAGAAGAAACCTA 138553 ||||| || ||||||| || | || | | | | ||||||| |||||||| || Sbjct 47939 AGATGATGATGGTGCAAATACCTTCTATGCTTGTAACGCAACTCAAGCTGAAGAAACTTA 47880 Query 138554 TTCAATGGTTACTGCTAACCGTTACTGGTC 138583 ||||||| | ||| ||||| | | ||||| Sbjct 47879 TTCAATGATCACTACTAACAGCTTTTGGTC 47850 Score = 178 bits (196), Expect = 2e-39 Identities = 219/297 (74%), Gaps = 3/297 (1%) Strand=Plus/Minus Query 138579 TGGTCGCAAATCTTTGGAATTGCTTTTAGTAATAAGCGTTGGCTTCACTTCTTTATGCTC 138638 ||||| ||||| ||||| || ||||| ||||| |||||| | || ||||||||||| Sbjct 1009 TGGTCCCAAATATTTGGTGTTTCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGCTA 950 Query 138639 TTTGTTCCCGTCATGGGTCTCTGGACTAGTAGTATTGGTATTATTGGTCTTGCTCTTAAC 138698 |||| | || || || | | || | | |||||| | ||| || ||||| ||| Sbjct 949 CTTGTACTTGTAATCAGTTTATAGATGACTGCTATTGGC-TAGTTGCCCTGGCTCTGAAC 891 Query 138699 CTACGAGCGTATGATTTCGTATCGCAAGAAATTCGTGCAGCAGAAGATCCTGAATTCGAG 138758 ||| | || ||||||||| | | || |||| ||||||||||||||||||||||| ||| Sbjct 890 CTATGTGCCTATGATTTCTT--CCCAGAAAATCCGTGCAGCAGAAGATCCTGAATTTGAG 833 Query 138759 ACCTTCTACACCAAGAACATTCTTCTGAATGAAGGTCTGCGTGCCTGGATGGCTCCTGTG 138818 || ||||||||||| | |||||| | ||||| ||| | | ||| |||||||| || | Sbjct 832 ACTTTCTACACCAAATATATTCTTTTAAATGAGGGTATTCATGCGTGGATGGCAGCTCAG 773 Query 138819 GATCAACCTCACGAAAACTTTGTTTTTCCTGAAGAAGTATTGCCAAGAGGCAACGCT 138875 ||||| ||||| ||||| || | || ||||| || || | ||| | || | |||| Sbjct 772 GATCAGCCTCATGAAAATCTTATATTCCCTGAGGAGGTTCTACCATGTGGAATCGCT 716 >seq666 Length=229199 Score = 197 bits (218), Expect = 2e-45 Identities = 200/259 (77%), Gaps = 1/259 (0%) Strand=Plus/Minus Query 138525 TTTGAACCTA-CTCAAGAAGAAGAAACCTATTCAATGGTTACTGCTAACCGTTACTGGTC 138583 ||| |||||| |||||| |||||||| |||||||||||||||||| | || | ||||| Sbjct 152535 TTTTAACCTAACTCAAGCTGAAGAAACTTATTCAATGGTTACTGCTTATCGCTTTTGGTC 152476 Query 138584 GCAAATCTTTGGAATTGCTTTTAGTAATAAGCGTTGGCTTCACTTCTTTATGCTCTTTGT 138643 ||||||||||| |||||||| ||||| | ||| | || ||||||||| | ||||| Sbjct 152475 TCAAATCTTTGGTGTTGCTTTTCTCAATAAAGGCTGGTTACATTTCTTTATGTTATTTGT 152416 Query 138644 TCCCGTCATGGGTCTCTGGACTAGTAGTATTGGTATTATTGGTCTTGCTCTTAACCTACG 138703 ||||||| ||| | |||| ||| |||||| | |||| || ||| | |||||||| Sbjct 152415 ACCCGTCACCGGTTTATGGATGAGTGCTATTGGCGTAGTTGGCCTGGCTTTGAACCTACG 152356 Query 138704 AGCGTATGATTTCGTATCGCAAGAAATTCGTGCAGCAGAAGATCCTGAATTCGAGACCTT 138763 || | ||| ||| | || || ||||| | |||||| |||||||||||||| ||||| || Sbjct 152355 TGCTTGTGACTTCATTTCCCAGGAAATCCATGCAGCGGAAGATCCTGAATTTGAGACTTT 152296 Query 138764 CTACACCAAGAACATTCTT 138782 ||| |||| || ||| || Sbjct 152295 CTATGCCAAAAATATTTTT 152277 >seq12572 Length=34890 Score = 111 bits (122), Expect = 2e-19 Identities = 192/275 (70%), Gaps = 12/275 (4%) Strand=Plus/Minus Query 138153 TGGACTTTTGTGGCGCTCCACGGGGCCTTTAGTCTGATTGGATTCATGCTTCGCCAGTTT 138212 ||||||||||| || ||||| ||||| ||| || ||| || ||| | || || ||| Sbjct 26961 TGGACTTTTGTCGCTCTCCATGGGGCTTTTGCACTAATTTTTTTTATGTTACGTCAATTT 26902 Query 138213 GAGATCTCTCG-TCTGGTAGGCATCCGTCCCTAC--AACGCAATCGCATTCTCTGGTCCC 138269 || | |||| |||| | || || | || ||||| ||||||||||||| Sbjct 26901 GAACTTGCTCGGTCTGTT---CAATTGTTTTTTTTTAATGCAATTTCATTCTCTGGTCCG 26845 Query 138270 ATCGCTGTGTTCGTCAGCGTGTTCCTGATGTATCCTTTGGGTCAATCCAGTTGGTTCTTT 138329 ||||||| || || | ||||| || ||||| |||| ||||| ||||||||||| Sbjct 26844 TTCGCTGTTTTTGTTTTTTTTTTCCTTATTTATCCACTGGGACAATCTGGTTGGTTCTTT 26785 Query 138330 GCTCCCTCCTTTGGTGTGGCAGCAATCTTCCGATTC---CTGTTGTTCCTTCAGGGTTTC 138386 | | | ||||| || ||||| || || |||||| || || ||| || ||| Sbjct 26784 GTTTTTTTTTTTGGCGTAGCAGCTATATTTCGATTCATCCTTTTCTTCTTTTT---TTTT 26728 Query 138387 CATAACTGGACCCTCAACCCCTTTCATATGATGGG 138421 ||||| ||||| | ||||| |||||||||||||| Sbjct 26727 CATAATTGGACATTAAACCCATTTCATATGATGGG 26693 >seq8160 Length=957 Score = 107 bits (118), Expect = 2e-18 Identities = 91/112 (81%), Gaps = 0/112 (0%) Strand=Plus/Plus Query 136031 GGTTACAAGTTCGGTCAAGAAGAAGAGACTTACAACATTGTTGCTGCTCATGGTTACTTC 136090 |||||||| || | | ||||||||||||| || || ||||| |||||||||| ||| || Sbjct 347 GGTTACAAATTTGATTAAGAAGAAGAGACCTATAATATTGTGGCTGCTCATGATTATTTT 406 Query 136091 GGTCGTCTGATCTTCCAATATGCGTCGTTCAACAACTCTCGTTCGCTACACT 136142 ||||| | |||||||||||| | ||||||||||||||||| |||||| Sbjct 407 GGTCGATTAATCTTCCAATATCCTAGTTTCAACAACTCTCGTTCTTTACACT 458 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627831134374400