Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dichanthelium_20oligosanthes_20[genbank_20GCA_5F001633215.2_202016- 09-29] 17,436 sequences; 589,166,415 total letters Query= NC_006882.2 Length=45176 Score E Sequences producing significant alignments: (Bits) Value seq16913 302 1e-77 seq12982 203 9e-48 seq8160 89.7 1e-13 >seq16913 Length=117496 Score = 302 bits (334), Expect = 1e-77 Identities = 527/765 (69%), Gaps = 24/765 (3%) Strand=Plus/Minus Query 19299 TGGGTCACAAGTACCGAGAACCGCCTTTATGTAGGTTGGTTTGGAGTACTTATGATTCCT 19358 ||| | || || ||||| ||||| ||||| | || ||||| || || | ||||| | | Sbjct 95212 TGGATAACTAGCACCGAAAACCGTCTTTACATCGGATGGTTCGGTGTTTTGATGATCCGT 95153 Query 19359 TGCTTACTAGCTGCTACTACTTGCTTTATACTCGCCTTTATCGCAGCACCGCCTGTAGAT 19418 |||| || | || ||| | ||||| ||||||| ||||| || || || |||||| Sbjct 95152 ACCTTATTAACCGCAACTTCCATATTTATTATCGCCTTCATCGCTGCTCCTCCGGTAGAT 95093 Query 19419 ATAGATGGCATACGTGAGCCAGTTTCCGGCTCGTTAATGTACGGAAACAATATTATTTCT 19478 || ||||| || |||||||| ||||| | || ||| | || ||||||||||||| ||| Sbjct 95092 ATTGATGGTATTCGTGAGCCTGTTTCTAGTTCTTTACTTTATAGAAACAATATTATATCT 95033 Query 19479 GGAGCAGTAGTTCC-----AAGCTCCAAT-------------GCAATAGGACTGCACTTT 19520 || || | |||| || || || ||||| ||| |||| ||| Sbjct 95032 GGTGCTATTATTCCTGCAGAAACTATTATTCCTACTTCTGTGGCAATCGGATTGCATTTT 94973 Query 19521 TATCCGATCTGGGAAGCCGGCACTTTAGATGAGTGGTTATACAACGGCGGTCCATATCAA 19580 || || || ||| || | | || | ||||| |||||||| || | ||||| | | | Sbjct 94972 TACCCAATTTGGAAAACTGCATCTGTTGATGAATGGTTATAAAATTGTGGTCCTTCTGAG 94913 Query 19581 CTTGTTGTCTTCCACTTCTTAATAGGAGTAGCAGCATACGCTGGTAGACAGTGGG-AACT 19639 || |||| | | || ||| | || ||||| || ||| | |||||| |||| Sbjct 94912 CTAATTGTTCTATATTTTTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGGAACT 94853 Query 19640 ATCTTACAGATTAGGAATGAGACCATGGATATTCGTAGCATATACAGCACCACTATCAGC 19699 || | | | || | | | || ||||| | |||||| |||| || | |||| Sbjct 94852 TAGTTTCCGTCTGGGTACGCGCCCTTGGATTGCTATTGCATATTCAGCTCCTTTG-CAGC 94794 Query 19700 AGCTCTTGCTGTGTTTCTCGTTTACCCATTTGGGCAAGGGAGTTTTAGTGATGGTATGCC 19759 ||| |||||| || | |||||| | |||| ||||||||||| |||||| |||| Sbjct 94793 TGCTAGTGCTGTTTTCTTGGTTTACTCTATTGGTCAAGGGAGTTTCTCCGATGGTGTGCC 94734 Query 19760 TCTTGGTATCTCTGGTACTTTTAACTTTATGTTCGTATTCCAAGCAGAACACAATATCCT 19819 | | || || ||||||| ||| |||||||| | |||||||| | ||| ||||| ||||| Sbjct 94733 TTTAGGAATATCTGGTA-TTTCAACTTTATAATTGTATTCCAGGTAGAGCACAACATCCT 94675 Query 19820 TATGCATCCGTTCCACATGCTCGGTGTTGCTGGCGTATTCGGTGGATCTCTTTTCTCTGC 19879 ||||||| | || |||||| | ||| | ||||| |||||||| || ||| ||| | Sbjct 94674 TATGCATTCATTTCACATGTTAGGTATAGCTGGTGTATTCGGCGGTTCT---TTCAGCGT 94618 Query 19880 TATGCACGGAAGTTTGGTTACTTCCTCGATCATCAAGGAAACAACTGAGGATGTATCGCA 19939 |||||| || |||| || || | |||| |||||| ||||| ||| || Sbjct 94617 TATGCATGGTTCCTTGGCAACCTCTAGTTTGATCAGGGAAACCACTGAAAATGAGTCTGC 94558 Query 19940 GAACTATGGCTATAAGTTCGGGCAAGATGAAGAGACATATAATATTGTCGCTGCACACGG 19999 || | || || || || || ||||| |||||||||| |||||| || ||||| ||||| Sbjct 94557 TAATGAAGGTTACAAATTTGGTCAAGAAGAAGAGACATGTAATATCGTGGCTGCTCACGG 94498 Query 20000 GTACTTTGGGAGATTGATATTTCAATATGCTTCTTTCAATAATTC 20044 || ||||| |||| || |||||||||||| ||||||| || || Sbjct 94497 TTATTTTGGTCGATTAATCTTTCAATATGCTACTTTCAACAACTC 94453 >seq12982 Length=32303 Score = 203 bits (224), Expect = 9e-48 Identities = 335/478 (70%), Gaps = 4/478 (1%) Strand=Plus/Plus Query 19305 ACAAGTACCGAGAACCGCCTTTATGTAGGTTGGTTTGGAGTACTTATGATTCCTTGCTTA 19364 || || ||||| |||| ||||| | || |||||||| || | ||||| ||| |||| Sbjct 488 ACTAGCACCGAACACCGTCTTTACATCGGATGGTTTGGTGTTTTGATGATCCCTACCTTA 547 Query 19365 CTAGCTGCTACTACTTGCTTTATACTCGCCTTTATCGCAGCACCGCCTGTAGATATAGAT 19424 | | || ||| | |||| || |||| ||||| || || || |||||||| ||| Sbjct 548 TTGACCGCAACTTCCGTACTTATTATCACCTTCATCGCTGCTCCTCCAGTAGATATTGAT 607 Query 19425 GGCATACGTGAGCCAGTTTCCGGCTCGTTAATGTACGGAAACAATATTATTTCTGGAGCA 19484 || || |||||||| ||||| || || ||||| || ||||||| |||||| ||||| || Sbjct 608 GGTATTCGTGAGCCTGTTTCTGGTTCTTTAATTTATGGAAACAGTATTATCTCTGGTGCT 667 Query 19485 GTAGTTCCAAGCTCCAATG-CAATAGGACTGCACTTTTATCCGATCTGGGAAGCCGGCAC 19543 | |||| | || || | || ||| |||| ||||| || || ||| |||| | | Sbjct 668 ATTATTCCTA-CTTATGTGACGATCGGATTGCATTTTTACCCAATTTGGAAAGCTGCATC 726 Query 19544 TTTAGATGAGTGGTTATACAACGGCGGTCCATATCAACTTGTTGTCTTCCACTTCTTAAT 19603 | ||||| ||||||||||| |||||||| ||| | || |||| | || |||||| | Sbjct 727 CGTTGATGAATGGTTATACAATGGCGGTCCTTATGACCTAATTGTTCTACATTTCTTACT 786 Query 19604 AGGAGTAGCAGCATACGCTGGTAGACAGTGGGAACTATCTTACAGATTAGGAATGAGACC 19663 || ||||| || | | | | |||||||| || | | || ||| | | Sbjct 787 TGGTGTAGCTTGTTATATGGATCGTGACTGGGAACTTAGTTTCCATCTGGGTATGCGCCT 846 Query 19664 ATGGATATTCGTAGCATATACAGCACCACTATCAGCAGCTCTTGCTGTGTTTCTCG-TTT 19722 ||||| | || |||||| |||| || | ||| ||| |||| | ||||| | ||| Sbjct 847 TTGGATTGTTGTTGCATATTCAGCTCCTGTTGCAGTTGCTACTGCTAT-TTTCTTGATTT 905 Query 19723 ACCCATTTGGGCAAGGGAGTTTTAGTGATGGTATGCCTCTTGGTATCTCTGGTACTTT 19780 |||| |||| |||| |||||| ||||||||||||| | || || ||||||||||| Sbjct 906 ACCCTATTGGTCAAGAAAGTTTTTCTGATGGTATGCCTTTAGGAATATCTGGTACTTT 963 >seq8160 Length=957 Score = 89.7 bits (98), Expect = 1e-13 Identities = 76/94 (81%), Gaps = 0/94 (0%) Strand=Plus/Plus Query 19963 AAGATGAAGAGACATATAATATTGTCGCTGCACACGGGTACTTTGGGAGATTGATATTTC 20022 |||| |||||||| ||||||||||| ||||| || | || ||||| |||| || || | Sbjct 363 AAGAAGAAGAGACCTATAATATTGTGGCTGCTCATGATTATTTTGGTCGATTAATCTTCC 422 Query 20023 AATATGCTTCTTTCAATAATTCTCGTTCTTTACA 20056 ||||| || |||||| || |||||||||||||| Sbjct 423 AATATCCTAGTTTCAACAACTCTCGTTCTTTACA 456 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 144411693005616