Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dichanthelium_20oligosanthes_20[genbank_20GCA_5F001633215.2_202016- 09-29] 17,436 sequences; 589,166,415 total letters Query= NC_006883.2 Length=252401 Score E Sequences producing significant alignments: (Bits) Value seq16913 259 8e-64 seq12982 170 3e-37 >seq16913 Length=117496 Score = 259 bits (286), Expect = 8e-64 Identities = 532/778 (68%), Gaps = 36/778 (5%) Strand=Plus/Minus Query 211570 TTCTGCGACTGGGTAAC-ATCAACAAACAACAGAATCTATGTTGGTTGGTTTGGTGTTCT 211628 |||||| ||||| |||| | || | || ||| | | || | || ||||| |||||| | Sbjct 95221 TTCTGCAACTGGATAACTAGCACCGAA-AACCGTCTTTACATCGGATGGTTCGGTGTTTT 95163 Query 211629 TATGATCCCATGTCTTCT-AGCTGCAACAACATGCTTTATCGTAGCATTCATCGCAGCAC 211687 ||||||| | ||| | | | ||||| | ||||| | || |||||||| || | Sbjct 95162 GATGATCCG-TACCTTATTAACCGCAACTTCCATATTTATTATCGCCTTCATCGCTGCTC 95104 Query 211688 CTCCCGTTGATATCGACGGAATCCGTGAACCAGTAGCTGGTTCATTCATGTATGGTAACA 211747 |||| || ||||| || || || ||||| || || || |||| || | ||| | |||| Sbjct 95103 CTCCGGTAGATATTGATGGTATTCGTGAGCCTGTTTCTAGTTCTTTACTTTATAGAAACA 95044 Query 211748 ACATCATCTCTGGTGCAGTTGTTCCATC-----------TTCAAAC-------GCAATCG 211789 | || || |||||||| || |||| | ||| || ||||||| Sbjct 95043 ATATTATATCTGGTGCTATTATTCCTGCAGAAACTATTATTCCTACTTCTGTGGCAATCG 94984 Query 211790 GTTTACACTTCTATCCTATCTGGGAAGCAGCAACTCTTGATGAGTGGCTCTACAATGGTG 211849 | || || || || || || ||| || | ||| || ||||||| ||| | || ||| ||| Sbjct 94983 GATTGCATTTTTACCCAATTTGGAAAACTGCATCTGTTGATGAATGGTTATAAAATTGTG 94924 Query 211850 GTCCTTACCAGTTGGTAATCTTCCAC-TTCCTTA-TCGGAATCTCAGCATACATGGGAAG 211907 |||||| || | | | ||| | || ||| | || | | || ||||| | Sbjct 94923 GTCCTTCTGAGCTAAT--TGTTCTATATTTTTTACTTGGTGTAGCTTGTTATATGGGTCG 94866 Query 211908 ACAGTGGG-AACTTTCATACCGTTTAGGTATGCGTCCTTGGATCTGTGTTGCTTATTCAG 211966 |||||| ||||| | |||| | |||| ||| |||||||| | |||| ||||||| Sbjct 94865 TGAGTGGGGAACTTAGTTTCCGTCTGGGTACGCGCCCTTGGATTGCTATTGCATATTCAG 94806 Query 211967 CACCTGTATCAGCAGCTTTCGCTGTATTCCTTGTTTACCCATTCGGTCAGGGTTCATTCT 212026 | ||| | |||| ||| ||||| ||| | |||||| | | ||||| || |||| Sbjct 94805 CTCCTTTG-CAGCTGCTAGTGCTGTTTTCTTGGTTTACTCTATTGGTCAAGGGAGTTTCT 94747 Query 212027 CAGACGGTATGCCTTTAGGTATATCAGGAACATTCAACTTCATGTTCGTATTCCAAGCAG 212086 | || ||| |||||||||| ||||| || | |||||||| || | |||||||| | || Sbjct 94746 CCGATGGTGTGCCTTTAGGAATATCTGGTAT-TTCAACTTTATAATTGTATTCCAGGTAG 94688 Query 212087 AACATAACATCCTTATGCACCCATTCCATATGGCAGGTGTTGCAGGTATGTTCGGTGGAG 212146 | || |||||||||||||| |||| || ||| |||| | || ||| | ||||| || Sbjct 94687 AGCACAACATCCTTATGCATTCATTTCACATGTTAGGTATAGCTGGTGTATTCGGCGG-- 94630 Query 212147 CATTATTCTCTGC--TATGCACGGTTCTCTTGTTACATCTTCACTTATCCGTGAAACCAC 212204 || || || || |||||| ||||| | | || ||| | ||| | |||||||| Sbjct 94629 --TTCTT-TCAGCGTTATGCATGGTTCCTTGGCAACCTCTAGTTTGATCAGGGAAACCAC 94573 Query 212205 TGGTTTAGATTCACAGAACTATGGTTACAAGTTCGGACAAGAAGAAGAGACATATAACAT 212264 || || || || | |||||||| || || |||||||||||||||| ||| || Sbjct 94572 TGAAAATGAGTCTGCTAATGAAGGTTACAAATTTGGTCAAGAAGAAGAGACATGTAATAT 94513 Query 212265 CGTTGCTGCACATGGATACTTCGGTAGACTTATCTTCCAGTATGCATCATTCAACAAC 212322 ||| ||||| || || || || ||| || | ||||| || ||||| | ||||||||| Sbjct 94512 CGTGGCTGCTCACGGTTATTTTGGTCGATTAATCTTTCAATATGCTACTTTCAACAAC 94455 >seq12982 Length=32303 Score = 170 bits (188), Expect = 3e-37 Identities = 340/495 (69%), Gaps = 8/495 (2%) Strand=Plus/Plus Query 211570 TTCTGCGACTGGGTAAC-ATCAACAAACAACAGAATCTATGTTGGTTGGTTTGGTGTTCT 211628 |||||| ||| | |||| | || | |||| | | | || | || |||||||||||| | Sbjct 473 TTCTGCAACTAGATAACTAGCACCGAACACC-GTCTTTACATCGGATGGTTTGGTGTTTT 531 Query 211629 TATGATCCCATGTCTTCTAG-CTGCAACAACATGCTTTATCGTAGCATTCATCGCAGCAC 211687 |||||||| | ||| | | | ||||| | |||| | | |||||||| || | Sbjct 532 GATGATCCC-TACCTTATTGACCGCAACTTCCGTACTTATTATCACCTTCATCGCTGCTC 590 Query 211688 CTCCCGTTGATATCGACGGAATCCGTGAACCAGTAGCTGGTTCATTCATGTATGGTAACA 211747 |||| || ||||| || || || ||||| || || ||||||| || || ||||| |||| Sbjct 591 CTCCAGTAGATATTGATGGTATTCGTGAGCCTGTTTCTGGTTCTTTAATTTATGGAAACA 650 Query 211748 ACATCATCTCTGGTGCAGTTGTTCCATCTTCAAACGCAATCGGTTTACACTTCTATCCTA 211807 || ||||||||||| || |||| ||| | ||||| || || || || || | Sbjct 651 GTATTATCTCTGGTGCTATTATTCCTACTTATGTGACGATCGGATTGCATTTTTACCCAA 710 Query 211808 TCTGGGAAGCAGCAACTCTTGATGAGTGGCTCTACAATGGTGGTCCTTACCAGTTGGTAA 211867 | ||| |||| ||| | ||||||| ||| | |||||||| |||||||| | | | Sbjct 711 TTTGGAAAGCTGCATCCGTTGATGAATGGTTATACAATGGCGGTCCTTATGACCT--AAT 768 Query 211868 TCTTCCAC-TTCCTTA-TCGGAATCTCAGCATACATGGGAAGACAGTGGGAACTTTCATA 211925 | ||| || || |||| | || | | || |||| | | ||||||||| | Sbjct 769 TGTTCTACATTTCTTACTTGGTGTAGCTTGTTATATGGATCGTGACTGGGAACTTAGTTT 828 Query 211926 CCGTTTAGGTATGCGTCCTTGGATCTGTGTTGCTTATTCAGCACCTGTATCAGCAGCTTT 211985 || | | |||||||| | |||||| |||||| |||||||| ||||| ||| ||| Sbjct 829 CCATCTGGGTATGCGCCTTTGGATTGTTGTTGCATATTCAGCTCCTGTTGCAGTTGCTAC 888 Query 211986 CGCTGTATTCCTTGTTTACCCATTCGGTCAGGGTTCATTCTCAGACGGTATGCCTTTAGG 212045 ||| | ||| | ||||||| | ||||| | || || || |||||||||||||| Sbjct 889 TGCTATTTTCTTGATTTACCCTATTGGTCAAGAAAGTTTTTCTGATGGTATGCCTTTAGG 948 Query 212046 TATATCAGGAACATT 212060 ||||| || || || Sbjct 949 AATATCTGGTACTTT 963 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 807379193344160