Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dichanthelium_20oligosanthes_20[genbank_20GCA_5F001633215.2_202016- 09-29] 17,436 sequences; 589,166,415 total letters Query= NC_006884.2 Length=178249 Score E Sequences producing significant alignments: (Bits) Value seq16913 241 1e-58 seq12982 140 4e-28 seq10113 123 3e-23 seq8160 102 9e-17 seq666 91.5 2e-13 seq12503 87.8 2e-12 >seq16913 Length=117496 Score = 241 bits (266), Expect = 1e-58 Identities = 519/767 (68%), Gaps = 28/767 (4%) Strand=Plus/Minus Query 170675 TGGGTAACATCCACTGACAATCGCATCTACGTTGGTTGGTTTGGTGTCTTAATGATCCCA 170734 ||| |||| ||| || || || | ||| | || ||||| ||||| || ||||||| Sbjct 95212 TGGATAACTAGCACCGAAAACCGTCTTTACATCGGATGGTTCGGTGTTTTGATGATCCG- 95154 Query 170735 TGTCTTCT-AACTGCTGCTGCTTGTTTCATTGTAGCATTCATCGCTGCTCCTCCAGTCGA 170793 | ||| | ||| || || | || ||| | || ||||||||||||||||| || || Sbjct 95153 TACCTTATTAACCGCAACTTCCATATTTATTATCGCCTTCATCGCTGCTCCTCCGGTAGA 95094 Query 170794 TATCGACGGAATCAGAGAACCAGTTGCGGGTTCTTTCTTATATGGTAACAACATCATCTC 170853 ||| || || || | || || ||| | ||||||| | ||| | ||||| || || || Sbjct 95093 TATTGATGGTATTCGTGAGCCTGTTTCTAGTTCTTTACTTTATAGAAACAATATTATATC 95034 Query 170854 TGGTGCTGTAGTTCCATC-----------TTCAAAC-------GCAATAGGATTACACTT 170895 ||||||| | |||| | ||| || ||||| ||||| || || Sbjct 95033 TGGTGCTATTATTCCTGCAGAAACTATTATTCCTACTTCTGTGGCAATCGGATTGCATTT 94974 Query 170896 CTATCCCATCTGGGAAGCAGCCACTATGGACGAGTGGTTGTACAACGGAGGTCCTTACCA 170955 || || || ||| || | || || | || || ||||| || || | ||||||| | Sbjct 94973 TTACCCAATTTGGAAAACTGCATCTGTTGATGAATGGTTATAAAATTGTGGTCCTTCTGA 94914 Query 170956 GTTAGTTATTTTCCACTTCCTTATTGGAATCTCTGCCTACATGGGTAGACAGTGGG-AAC 171014 | || || || | | || | |||| | || || |||||| | |||||| ||| Sbjct 94913 GCTAATTGTTCTATATTTTTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGGAAC 94854 Query 171015 TATCATACAGACTAGGAATGAGACCTTGGATATGTGTAGCATACTCAGCACCTGTATCTG 171074 | | | | || || | | | |||||||| | | ||||| ||||| ||| | | | Sbjct 94853 TTAGTTTCCGTCTGGGTACGCGCCCTTGGATTGCTATTGCATATTCAGCTCCTTTG-CAG 94795 Query 171075 CAGCATTTGCAGTATTCCTTGTGTA-TCCATTCGGTCAGGGTTCATTCTCTGATGGTATG 171133 | || ||| || ||| | || || || ||| ||||| || ||||| |||||| || Sbjct 94794 CTGCTAGTGCTGTTTTCTTGGTTTACTCTATT-GGTCAAGGGAGTTTCTCCGATGGTGTG 94736 Query 171134 CCACTAGGTATCTCAGGTACGTTCAACTTCATGTTCGTGTTCCAAGCAGAACACAACATA 171193 || |||| || || |||| |||||||| || | || ||||| | ||| |||||||| Sbjct 94735 CCTTTAGGAATATCTGGTAT-TTCAACTTTATAATTGTATTCCAGGTAGAGCACAACATC 94677 Query 171194 CTAATGCACCCCTTCCATATGGCAGGTGTAGCAGGTATGTTCGGTGGTAGTCTCTTCAGT 171253 || ||||| | || || ||| |||| |||| ||| | ||||| ||| ||| ||||| Sbjct 94676 CTTATGCATTCATTTCACATGTTAGGTATAGCTGGTGTATTCGGCGGT--TCT-TTCAGC 94620 Query 171254 GCAATGCACGGTTCTCTAGTGACATCTTCTCTAATCAGAGAGACAACTGAGAACGAGAGT 171313 | ||||| ||||| | | || ||| | | ||||| || || ||||| || ||| | Sbjct 94619 GTTATGCATGGTTCCTTGGCAACCTCTAGTTTGATCAGGGAAACCACTGAAAATGAGTCT 94560 Query 171314 CAAAACTACGGCTATAAGTTCGGACAAGAAGAAGAAACATATAACATTGTTGCTGCTCAT 171373 || | || || || || || ||||||||||| |||| ||| || || |||||||| Sbjct 94559 GCTAATGAAGGTTACAAATTTGGTCAAGAAGAAGAGACATGTAATATCGTGGCTGCTCAC 94500 Query 171374 GGATACTTCGGTAGATTAATCTTCCAGTATGCATCATTCAACAACTC 171420 || || || ||| |||||||||| || ||||| | ||||||||||| Sbjct 94499 GGTTATTTTGGTCGATTAATCTTTCAATATGCTACTTTCAACAACTC 94453 >seq12982 Length=32303 Score = 140 bits (154), Expect = 4e-28 Identities = 306/456 (67%), Gaps = 2/456 (0%) Strand=Plus/Plus Query 170702 TACGTTGGTTGGTTTGGTGTCTTAATGATCCCATGTCTTCTA-ACTGCTGCTGCTTGTTT 170760 ||| | || ||||||||||| || |||||||| | ||| | || || || | | Sbjct 509 TACATCGGATGGTTTGGTGTTTTGATGATCCC-TACCTTATTGACCGCAACTTCCGTACT 567 Query 170761 CATTGTAGCATTCATCGCTGCTCCTCCAGTCGATATCGACGGAATCAGAGAACCAGTTGC 170820 ||| | | |||||||||||||||||||| ||||| || || || | || || ||| | Sbjct 568 TATTATCACCTTCATCGCTGCTCCTCCAGTAGATATTGATGGTATTCGTGAGCCTGTTTC 627 Query 170821 GGGTTCTTTCTTATATGGTAACAACATCATCTCTGGTGCTGTAGTTCCATCTTCAAACGC 170880 |||||||| | ||||| |||| || |||||||||||| | |||| ||| | Sbjct 628 TGGTTCTTTAATTTATGGAAACAGTATTATCTCTGGTGCTATTATTCCTACTTATGTGAC 687 Query 170881 AATAGGATTACACTTCTATCCCATCTGGGAAGCAGCCACTATGGACGAGTGGTTGTACAA 170940 || ||||| || || || || || ||| |||| || | | || || ||||| ||||| Sbjct 688 GATCGGATTGCATTTTTACCCAATTTGGAAAGCTGCATCCGTTGATGAATGGTTATACAA 747 Query 170941 CGGAGGTCCTTACCAGTTAGTTATTTTCCACTTCCTTATTGGAATCTCTGCCTACATGGG 171000 || |||||||| | || || || | || ||| | |||| | || || |||| Sbjct 748 TGGCGGTCCTTATGACCTAATTGTTCTACATTTCTTACTTGGTGTAGCTTGTTATATGGA 807 Query 171001 TAGACAGTGGGAACTATCATACAGACTAGGAATGAGACCTTGGATATGTGTAGCATACTC 171060 | | | |||||||| | | || || ||| | | |||||| ||| ||||| || Sbjct 808 TCGTGACTGGGAACTTAGTTTCCATCTGGGTATGCGCCTTTGGATTGTTGTTGCATATTC 867 Query 171061 AGCACCTGTATCTGCAGCATTTGCAGTATTCCTTGTGTATCCATTCGGTCAGGGTTCATT 171120 ||| ||||| | | || ||| | ||| | | || || | ||||| | || Sbjct 868 AGCTCCTGTTGCAGTTGCTACTGCTATTTTCTTGATTTACCCTATTGGTCAAGAAAGTTT 927 Query 171121 CTCTGATGGTATGCCACTAGGTATCTCAGGTACGTT 171156 |||||||||||||| |||| || || ||||| || Sbjct 928 TTCTGATGGTATGCCTTTAGGAATATCTGGTACTTT 963 >seq10113 Length=56568 Score = 123 bits (136), Expect = 3e-23 Identities = 245/355 (69%), Gaps = 10/355 (3%) Strand=Plus/Minus Query 171795 TTTGACGTTCTTGATGATTGGTTAAAGAGAGATCGTTTCGTATTCATCGGATGGTCTGGT 171854 ||||| || | || || | |||| || || | ||| || || | |||||||||| Sbjct 48569 TTTGATATTATGGACGACTTGTTACGAAGGGACCATTTTGTTTTTGTATGATGGTCTGGC 48510 Query 171855 CTTTTACTTTTACCTTGTGCTTACCTAGCAATCGGAGGTTGGTTCGTAGGAACTACTTTC 171914 || || || || ||||||||||| | || | || |||||||| ||| |||||||| Sbjct 48509 CTATTGCTCTTTCCTTGTGCTTATTTTGCTTTAGGGGGTTGGTTTACAGGRACTACTTTT 48450 Query 171915 GTGACCTCATGGTACACACATGGTATTGCATCCT-CATATCTTGAGGGAGCAAACTTTTT 171973 || || || ||||| || ||||| |||| || | | ||| | || ||| || || || Sbjct 48449 GTAACTTCTTGGTATACCCATGG-ATTGGATAGTTCCTATTTGGAAGGATGCAATTTCTT 48391 Query 171974 AACTGCAGCAGT-ATCAACACCTGGTGATGCTATGGGTCATAGTCTATTGTTCCTA---T 172029 ||| || || || |||| | |||| | || | | | || | ||| ||||| ||| | Sbjct 48390 AACAGCGGCGGTTATCA-CTCCTGCTAATAGTTTAG--CACACTCT-TTGTTACTACTAT 48335 Query 172030 GGGGACCTGAGGCACAAGGAGATCTTGTACGATGGTTTCAATTAGGTGGACTATGGAACT 172089 |||| | || | ||| || ||| || || || | |||||||||||| || |||| | Sbjct 48334 GGGGCCTGGAAGAACAGGGGGATTTTACTCGTTGATGTCAATTAGGTGGTCTGTGGACTT 48275 Query 172090 TTGTAGCATTACATGGAGTCTTTGGACTCATAGGTTTCATGCTTAGACAGTTTGA 172144 |||| || | ||||| | ||| || |||||||||||| | | || ||||| Sbjct 48274 TTGTCGCTCTCCATGGGGCTTTTATGCTAATAGGTTTCATGTTACGTCAATTTGA 48220 Score = 100 bits (110), Expect = 3e-16 Identities = 202/296 (68%), Gaps = 3/296 (1%) Strand=Plus/Minus Query 172530 TGGTCACAGATATTTGGTATAGCATTTTCAAACAAAAGATTCTTACACTTCCTTATGTTG 172589 ||||| || ||||||||| | | ||||| || ||| | | ||||| ||| ||||| | Sbjct 1009 TGGTCCCAAATATTTGGTGTTTCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGCTA 950 Query 172590 TTCGTACCTGTCATGGGTATGTGGACATCATCTATAGGTATCGTAGGTCTTGCACTTAAC 172649 | |||| ||| || || | | || | |||| || | || | || || || ||| Sbjct 949 CTTGTACTTGTAATCAGTTTATAGATGACTGCTATTGGC-TAGTTGCCCTGGCTCTGAAC 891 Query 172650 CTCAGAGCATACGACTTTGTATCTCAAGAGATAAGAGCAGCAGAAGACCCAGAGTTTGAA 172709 || | || || || ||| | || || | || | ||||||||||| || || ||||| Sbjct 890 CTATGTGCCTATGA-TTTCT-TCCCAGAAAATCCGTGCAGCAGAAGATCCTGAATTTGAG 833 Query 172710 ACCTTCTACACTAAGAACATTCTTCTTAATGAAGGTATGAGAGCATGGATGTCATCTGTC 172769 || |||||||| || | |||||| | ||||| ||||| || |||||| || || Sbjct 832 ACTTTCTACACCAAATATATTCTTTTAAATGAGGGTATTCATGCGTGGATGGCAGCTCAG 773 Query 172770 GATCAACCCCATGAGAACTTTGTGTTCCCAGAAGAAGTCTTGCCACGAGGCAACGC 172825 ||||| || ||||| || || | ||||| || || || | ||| | || | ||| Sbjct 772 GATCAGCCTCATGAAAATCTTATATTCCCTGAGGAGGTTCTACCATGTGGAATCGC 717 >seq8160 Length=957 Score = 102 bits (112), Expect = 9e-17 Identities = 80/96 (83%), Gaps = 0/96 (0%) Strand=Plus/Plus Query 171339 AAGAAGAAGAAACATATAACATTGTTGCTGCTCATGGATACTTCGGTAGATTAATCTTCC 171398 |||||||||| || ||||| ||||| |||||||||| || || ||| |||||||||||| Sbjct 363 AAGAAGAAGAGACCTATAATATTGTGGCTGCTCATGATTATTTTGGTCGATTAATCTTCC 422 Query 171399 AGTATGCATCATTCAACAACTCTCGTTCATTACACT 171434 | ||| | ||||||||||||||||| ||||||| Sbjct 423 AATATCCTAGTTTCAACAACTCTCGTTCTTTACACT 458 >seq666 Length=229199 Score = 91.5 bits (100), Expect = 2e-13 Identities = 164/240 (68%), Gaps = 0/240 (0%) Strand=Plus/Minus Query 172494 GAAGAAACTTATAGTATGATTACTGCTAACAGATTCTGGTCACAGATATTTGGTATAGCA 172553 |||||||||||| ||| |||||||| | | || ||||| || || |||||| | || Sbjct 152516 GAAGAAACTTATTCAATGGTTACTGCTTATCGCTTTTGGTCTCAAATCTTTGGTGTTGCT 152457 Query 172554 TTTTCAAACAAAAGATTCTTACACTTCCTTATGTTGTTCGTACCTGTCATGGGTATGTGG 172613 ||| || ||| | | ||||| ||| ||||||| || ||||| |||| ||| | ||| Sbjct 152456 TTTCTCAATAAAGGCTGGTTACATTTCTTTATGTTATTTGTACCCGTCACCGGTTTATGG 152397 Query 172614 ACATCATCTATAGGTATCGTAGGTCTTGCACTTAACCTCAGAGCATACGACTTTGTATCT 172673 | |||| || | || || || || | ||||| | || | ||||| | || Sbjct 152396 ATGAGTGCTATTGGCGTAGTTGGCCTGGCTTTGAACCTACGTGCTTGTGACTTCATTTCC 152337 Query 172674 CAAGAGATAAGAGCAGCAGAAGACCCAGAGTTTGAAACCTTCTACACTAAGAACATTCTT 172733 || || || ||||| ||||| || || ||||| || ||||| | || || ||| || Sbjct 152336 CAGGAAATCCATGCAGCGGAAGATCCTGAATTTGAGACTTTCTATGCCAAAAATATTTTT 152277 >seq12503 Length=143431 Score = 87.8 bits (96), Expect = 2e-12 Identities = 109/148 (74%), Gaps = 1/148 (1%) Strand=Plus/Plus Query 171795 TTTGACGTTCTTGATGATTGGTTAAAGAGAGATCGTTTCGTATTCATCGGATGGTCTGGT 171854 ||||| || | || || |||||| || || |||||||| || || |||| ||| || Sbjct 88079 TTTGATATTATGGACGACTGGTTACGAAGGGACCGTTTCGTTTTTATAGGATTGTCCGGC 88138 Query 171855 CTTTTACTTTTACCTTGTGCTTACCTAGCAATCGGAGGTTGGTTCGTAGGAACTACTTTC 171914 || || || || ||||||||||| | || | || |||||||| |||| |||||||| Sbjct 88139 CTATTGCTCTTTCCTTGTGCTTATTTCGCTTTAGGGGGTTGGTTTATAGGGACTACTTTT 88198 Query 171915 GTGACCTCATGGTACACACATGGTATTG 171942 | || || ||||| || ||||| |||| Sbjct 88199 ATAACTTCTTGGTATACCCATGG-ATTG 88225 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570144509915040