Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dichanthelium_20oligosanthes_20[genbank_20GCA_5F001633215.2_202016- 09-29] 17,436 sequences; 589,166,415 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq16827 96.9 2e-15 seq10464 96.9 2e-15 seq11548 95.1 8e-15 >seq16827 Length=13612 Score = 96.9 bits (106), Expect = 2e-15 Identities = 67/76 (88%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| |||||||| ||||| | |||||||||||||||||||||||||||| ||||| | Sbjct 12934 CTCTCTTTTCAAAGTCCTTTTTATCTTTCCCTCACGGTACTTGTTCGCTATCAGTCTCTC 12875 Query 20007 GGTAATATTTAGCCTT 20022 | |||||||||||| Sbjct 12874 GCCTATATTTAGCCTT 12859 >seq10464 Length=52742 Score = 96.9 bits (106), Expect = 2e-15 Identities = 67/76 (88%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| |||||||| ||||||| ||||||||| |||||||||||| ||||||||||| | Sbjct 38786 CTCTCTTTTCAAAGTCCTTTTCATCTTTCCCTCGCGGTACTTGTTCACTATCGGTCTCTC 38727 Query 20007 GGTAATATTTAGCCTT 20022 | |||||||||||| Sbjct 38726 GCCTATATTTAGCCTT 38711 >seq11548 Length=265335 Score = 95.1 bits (104), Expect = 8e-15 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150 ||||| |||| || | ||||| || |||||||||||||| || || ||||| || | Sbjct 39570 CCACCCCTCAGGCGGAGCACCAGGTGGAGAGTGCTCTCCTTCTGGATGTTGTAGTCTGCA 39511 Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210 | || | || || | ||| || || ||||| || ||||| || || || | ||| Sbjct 39510 AGGGTGCGGCCATCCTCCAGTTGCTTGCCAGCAAAAATCAGGCGCTGCTGGTCCGGGGGA 39451 Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270 | ||| || |||||| || || ||| || || | | || || || ||||| Sbjct 39450 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCAATGGTGTCAGAGCTCTCAACC 39391 Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 || || ||||| ||||| || || | ||| |||||||| |||||||| Sbjct 39390 TCCAAGGTAATGGTTTTGCCAGTGAGGGTCTTCACGAAGATCTGCAT 39344 Score = 82.4 bits (90), Expect = 5e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 38090 ACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGA 38149 |||||| | | ||| | ||||| || || ||| |||||| || || ||||| || | Sbjct 39799 ACCACCACGGAGACGGAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGC 39740 Query 38150 CAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGG 38209 | || | || || | || || ||||||||||| || || || || || | ||| Sbjct 39739 GAGGGTGCGGCCATCCTCCAGCTGCTTGCCGGCAAATATCAGACGCTGCTGGTCCGGGGG 39680 Query 38210 GACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAAC 38269 || ||| || |||||| ||||| |||||| || | | || || || ||||| Sbjct 39679 GATGCCCTCCTTGTCCTGGATTTTGGCCTTCACGTTGTCAATGGTGTCGGAGCTCTCAAC 39620 Query 38270 TTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 || | || || || || || |||||||| ||||| || |||||||| Sbjct 39619 CTCCAGAGTGATGGTCTTGCCAGTCAAGGTCTTCACAAAGATCTGCAT 39572 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334876023301316