Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dichanthelium_20oligosanthes_20[genbank_20GCA_5F001633215.2_202016- 09-29] 17,436 sequences; 589,166,415 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq12418 118 9e-22 seq12004 116 3e-21 seq12936 113 4e-20 seq11548 98.7 9e-16 seq8693 84.2 2e-11 >seq12418 Length=36051 Score = 118 bits (130), Expect = 9e-22 Identities = 165/228 (72%), Gaps = 4/228 (2%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| | ||| ||||| || || |||||||| | || | ||||| || Sbjct 33548 ATGCAGATCTTTGTGACGACCTTGACTGGAAAGACCATCACACTGGAGATTGAGTCCTC- 33490 Query 25059 GACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 |||| ||| | ||||| | || | ||| ||||| || || ||||||| ||||| Sbjct 33489 -ACACAATCAACAATGTGAAGGCGAAGATTCAG-GACAAGGAGGGCATTCCACTGGACCA 33432 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 |||||| | || |||||||| || || | || |||| ||||| ||| |||||||| Sbjct 33431 ACAGCGTCTCATCTTTGCCGGGAAGCAGCTTGAGGATGGCCGCACCTTGGCTGATTACAA 33372 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 ||||| ||||| ||||| || || | ||||| || || || ||||| Sbjct 33371 CATTCAGAAAGAGTCCACCCTTCACCTTGTGCTCAGACTGAGGGGAGG 33324 Score = 93.3 bits (102), Expect = 4e-14 Identities = 137/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| ||||| ||||| | || ||||||| | || |||||||||||| Sbjct 33322 ATGCAGATCTTTGTGAAGACCCTGACCAGAAAGACCATCACCCTGGAGGTGGAGTCGTCT 33263 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 |||||||| || ||||| || ||| ||||| || || || || || ||||| Sbjct 33262 GACACTATTGACAATGTGAAGGCGAAGATCCAGGACAAGGAGGGCATCCCGCCGGACCAG 33203 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||||| | || ||||| || || || | || || | ||||| ||| || ||||| Sbjct 33202 CAGCGCCTAATCTTTGCTGGTAAGGAACTTGAGGACGGACGCACCCTGGCGGACTACAAC 33143 Query 25179 ATTCAAAAAGAATC 25192 || || || || || Sbjct 33142 ATCCAGAAGGAGTC 33129 Score = 87.8 bits (96), Expect = 2e-12 Identities = 155/226 (69%), Gaps = 0/226 (0%) Strand=Plus/Minus Query 25000 TGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCTG 25059 |||| || || || ||||| | || || || | || || | ||||| ||||| |||| Sbjct 33775 TGCAGATTTTCGTCAAGACCCTCACTGGCAAGACTATTACTCTTGAAGTCGAGTCCTCTG 33716 Query 25060 ACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAAC 25119 |||||||||| | ||| || || ||||| ||||| || || || ||||| | Sbjct 33715 ACACTATCGATAATGTAAAGGCGAAGATTTAGGACAAGGAAGGTATCCCTCCGGACCAGC 33656 Query 25120 AGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAATA 25179 ||||| | || || || ||||| || | || |||| || || ||| || ||||| | Sbjct 33655 AGCGGTTGATCTTCGCTGGCAAGCAGCTTGAGGATGGCCGTACCTTGGCTGACTACAACA 33596 Query 25180 TTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 |||| || || ||||| || || | || || | || || ||||| Sbjct 33595 TTCAGAAGGAGTCCACCCTCCACCTCGTCCTTCGCCTTAGGGGAGG 33550 >seq12004 Length=146743 Score = 116 bits (128), Expect = 3e-21 Identities = 153/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| ||||| |||||||| || ||||||| | || |||||||||||| Sbjct 145399 ATGCAGATCTTTGTGAAGACCTTGACCGGAAAGACCATCACCCTGGAGGTGGAGTCGTCT 145458 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 || || ||||| ||||| || ||| ||||| || || || || || ||||| Sbjct 145459 GATACAATCGATAATGTGAAGGCGAAGATCCAAGACAAGGAGGGCATCCCGCCGGACCAG 145518 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||||| | || || |||||||| || | || || | |||||| | | ||||| || Sbjct 145519 CAGCGCCTCATCTTCGCCGGCAAGCAGCTGGAGGACGGTCGCACACTCGCGGATTATAAC 145578 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || || || || ||||| || || || ||||| Sbjct 145579 ATACAGAAGGAGTCCACCCTGCACTTGGTGCT 145610 Score = 107 bits (118), Expect = 2e-18 Identities = 151/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| ||||| |||| || || ||||||| | || || ||||||||| Sbjct 145627 ATGCAGATCTTTGTGAAGACCCTGACAGGGAAGACCATCACGCTGGAGGTCGAGTCGTCT 145686 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| || || ||||| || ||| ||||| || || || ||||| ||||| Sbjct 145687 GACACCATTGACAACGTGAAGGCGAAGATCCAAGACAAGGAGGGCATCCCACCAGACCAG 145746 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||||| | || ||||| || || || | || |||| ||||| ||| || ||||| Sbjct 145747 CAGCGCCTCATCTTTGCTGGTAAGCAGCTTGAGGATGGCCGCACCCTGGCGGACTACAAC 145806 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || || || ||||| ||||| ||| | || || Sbjct 145807 ATCCAGAAGGAATCTACGCTCCATCTGGTCCT 145838 >seq12936 Length=140512 Score = 113 bits (124), Expect = 4e-20 Identities = 152/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || ||||| | ||||| || ||||||| | || || ||||| || Sbjct 38640 ATGCAGATCTTCGTGAAGACGCTCACCGGCAAGACCATCACTTTGGAGGTCGAGTCTTCA 38581 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||||||||| ||||| || ||| ||||| || || ||||| || ||||| Sbjct 38580 GACACTATCGACAATGTGAAGGCGAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAG 38521 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||||| | |||||||||||||| || | || || | || || ||| |||||||| Sbjct 38520 CAGCGCCTCATTTTTGCCGGCAAGCAGCTTGAGGACGGGCGTACCCTGGCGGATTACAAC 38461 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || || || |||||||| || ||| | || || Sbjct 38460 ATCCAGAAGGAATCCACCCTCCATCTTGTCCT 38429 Score = 93.3 bits (102), Expect = 4e-14 Identities = 146/206 (71%), Gaps = 6/206 (3%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| |||||| | || || || ||||||| |||| |||||||| ||| Sbjct 33938 ATGCAGATCTTTGTGAAGACTCTCACTGGCAAGACCATCACCCTCGAGGTGGAGTCATCT 33879 Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 |||||||| || || || | ||||| ||| ||||| |||||| |||| ||||| Sbjct 33878 GACACTATTGA--CAATGCCAAGGCAAAGGTTCA-GGACAAGGAAGGGGTTCCCCCTGAT 33822 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 || ||||| | | || || ||||| || | || ||| | ||| | | ||||| Sbjct 33821 CAGCAGCGACTGTTCTTCGCTGGCAAGCAGCTCGAGGATTGCCACACGTTTGCTAATTAC 33762 Query 25176 AATATTCAAAAAGAATCCACGCTACA 25201 | ||||| || || ||||| || || Sbjct 33761 AGCATTCAGAAGGAGTCCACCCTGCA 33736 >seq11548 Length=265335 Score = 98.7 bits (108), Expect = 9e-16 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| ||||| ||||| || || ||||||| | || || ||| || Sbjct 39572 ATGCAGATCTTTGTGAAGACCTTGACTGGCAAGACCATCACTCTGGAGGTTGAGAGCTCC 39631 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| || || ||||| |||||| ||||| || || || || || ||||| Sbjct 39632 GACACCATTGACAACGTGAAGGCCAAAATCCAGGACAAGGAGGGCATCCCCCCGGACCAG 39691 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||||| | || ||||||||||| || | || |||| ||||| | | ||| ||||| Sbjct 39692 CAGCGTCTGATATTTGCCGGCAAGCAGCTGGAGGATGGCCGCACCCTCGCCGACTACAAC 39751 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || || || || ||||| || || | ||||| Sbjct 39752 ATCCAGAAGGAGTCCACCCTCCACCTGGTGCT 39783 >seq8693 Length=192112 Score = 84.2 bits (92), Expect = 2e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 25092 GACAAAGAAGGGATTCCACCTGACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAA 25151 ||||| ||||||||||| || || |||||||| | || || || ||||| || | || Sbjct 111172 GACAAGGAAGGGATTCCTCCGGATCAACAGCGTCTGATATTCGCTGGCAAGCAGCTGGAG 111231 Query 25152 GATGATCGCACTGTGGGCGATTACAATATTCAAAAAGAATCCACGCTACATTTAGTGCTA 25211 |||| ||||| ||| || ||||| ||||| || || || || || || || || || Sbjct 111232 GATGGACGCACACTGGCTGACTACAACATTCAGAAGGAGTCAACTCTCCACTTGGTCCTC 111291 Query 25212 AGGCTAAGAGGAGG 25225 ||||| ||||| || Sbjct 111292 AGGCTCAGAGGTGG 111305 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433235917258340