Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dichanthelium_20oligosanthes_20[genbank_20GCA_5F001633215.2_202016- 09-29] 17,436 sequences; 589,166,415 total letters Query= NC_008296.2 Length=177300 Score E Sequences producing significant alignments: (Bits) Value seq16913 264 1e-65 seq10113 228 9e-55 seq666 158 1e-33 seq12982 154 2e-32 seq8160 116 4e-21 seq12572 111 2e-19 seq12273 89.7 6e-13 >seq16913 Length=117496 Score = 264 bits (292), Expect = 1e-65 Identities = 527/776 (68%), Gaps = 26/776 (3%) Strand=Plus/Minus Query 166053 CTTCTGCGAATGGGTTACCTCTACCAACAACCGTCTTTATGTTGGTTGGTTTGGCACACT 166112 ||||||| | ||| | || ||| | ||||||||||| | || ||||| || | Sbjct 95222 CTTCTGCAACTGGATAACTAGCACCGAAAACCGTCTTTACATCGGATGGTTCGGTGTTTT 95163 Query 166113 GATGATTCCAACTCTGTTGGCAGCAACCATCTGTTTCATCGTCGCTTTCGTAGCGGCACC 166172 |||||| | || | || | ||||| | || || |||| ||| | || || || Sbjct 95162 GATGATCCGTACCTTATTAACCGCAACTTCCATATTTATTATCGCCTTCATCGCTGCTCC 95103 Query 166173 TCCTGTCGATATCGATGGGATCCGTGAGCCCGTAGCAGGCTCTCTAATGTATGGTAACAA 166232 ||| || ||||| ||||| || |||||||| || | | ||| || | ||| | ||||| Sbjct 95102 TCCGGTAGATATTGATGGTATTCGTGAGCCTGTTTCTAGTTCTTTACTTTATAGAAACAA 95043 Query 166233 CATCATCTCTGGTGCTGTTGTCCCCTCC-----------TCCAAC-------GCAATTGG 166274 || || ||||||||| || | || | ||| || ||||| || Sbjct 95042 TATTATATCTGGTGCTATTATTCCTGCAGAAACTATTATTCCTACTTCTGTGGCAATCGG 94983 Query 166275 TCTTCACTTCTATCCCATCTGGGAAGCAGCATCACTTGATGAATGGCTTTATAACGGTGG 166334 | || || || || || ||| || | ||||| ||||||||||| | || || |||| Sbjct 94982 ATTGCATTTTTACCCAATTTGGAAAACTGCATCTGTTGATGAATGGTTATAAAATTGTGG 94923 Query 166335 TCCTTTCCAGCTCGTAGTCTTCCACTTCCTCATCGGCATCTATGCCTACATGGGTCGTGA 166394 ||||| |||| | || | | || | | || | | || ||||||||||| Sbjct 94922 TCCTTCTGAGCTAATTGTTCTATATTTTTTACTTGGTGTAGCTTGTTATATGGGTCGTGA 94863 Query 166395 ATGGG-AATTGTCTTACCGCCTCGGTATGCGTCCTTGGATTTGCGTAGCATACTCTGCAC 166453 |||| || | || ||| || |||| ||| ||||||||| | ||||| || || | Sbjct 94862 GTGGGGAACTTAGTTTCCGTCTGGGTACGCGCCCTTGGATTGCTATTGCATATTCAGCTC 94803 Query 166454 CTGTTGCAGCAGCATCCGCAGTCTTCCTGGTCTATCCTTTCGGTCAAGGTTCTTTCTCTG 166513 || ||||||| || || || ||| |||| || || | |||||||| |||||| | Sbjct 94802 CT-TTGCAGCTGCTAGTGCTGTTTTCTTGGTTTACTCTATTGGTCAAGGGAGTTTCTCCG 94744 Query 166514 ACGCAATGCCCCTGGGTATCAGTGGCACCTTCAACTACATGCTTGTCTTCCAAGCAGAGC 166573 | | |||| | || || ||| | ||||||| || |||| ||||| | ||||| Sbjct 94743 ATGGTGTGCCTTTAGGAATATCTGGTAT-TTCAACTTTATAATTGTATTCCAGGTAGAGC 94685 Query 166574 ACAACATCCTCATGCACCCCTTCCATATGCTGGGTGTAGCAGGTGTATTCGGTGGGTCAC 166633 |||||||||| ||||| | || || ||| | ||| |||| ||||||||||| || || Sbjct 94684 ACAACATCCTTATGCATTCATTTCACATGTTAGGTATAGCTGGTGTATTCGGCGGTTC-- 94627 Query 166634 TTTTCTCGGCAATGCACGGCAGTCTCGTTACTTCCTCGCTCG-TCCGTGAGACCACTGAA 166692 |||| | ||||| || | | || || | | | | || | || ||||||||| Sbjct 94626 -TTTCAGCGTTATGCATGGTTCCTTGGCAACCTC-TAGTTTGATCAGGGAAACCACTGAA 94569 Query 166693 ACTGAGTCTCAAAACTATGGTTACAAGTTTGGTCAAGAAGAAGAGACCTACAACATCGTG 166752 | ||||||| || | |||||||| |||||||||||||||||||| | || |||||| Sbjct 94568 AATGAGTCTGCTAATGAAGGTTACAAATTTGGTCAAGAAGAAGAGACATGTAATATCGTG 94509 Query 166753 GCTGCTCATGGTTACTTCGGTCGCCTGATCTTCCAATACGCTTCCTTCAACAACTC 166808 |||||||| ||||| || ||||| | ||||| ||||| ||| | ||||||||||| Sbjct 94508 GCTGCTCACGGTTATTTTGGTCGATTAATCTTTCAATATGCTACTTTCAACAACTC 94453 >seq10113 Length=56568 Score = 228 bits (252), Expect = 9e-55 Identities = 491/726 (68%), Gaps = 11/726 (2%) Strand=Plus/Minus Query 167300 TTTGATGTCCTGGATGACTGGCTTAAACGCGACCGCTTTGTCTTTGTGGGCTGGTCTGGA 167359 |||||| | |||| |||| | | | | |||| ||||| ||||| | |||||||| Sbjct 48569 TTTGATATTATGGACGACTTGTTACGAAGGGACCATTTTGTTTTTGTATGATGGTCTGGC 48510 Query 167360 TTACTTCTTTTTCCCACTGCTTATCTGGCAATTGGTGGCTGGCTTACTGGCACGACGTTT 167419 || | || ||||| ||||||| | || | || || ||| |||| || || || ||| Sbjct 48509 CTATTGCTCTTTCCTTGTGCTTATTTTGCTTTAGGGGGTTGGTTTACAGGRACTACTTTT 48450 Query 167420 GTTACGAGCTGGTATACCCACGGGTTGGCGTCTAGTTACC--TTG--AGGGTGCTAATTT 167475 || || ||||||||||| || |||| ||||| | ||| ||| ||| ||||| Sbjct 48449 GTAACTTCTTGGTATACCCATGGATTGGA---TAGTTCCTATTTGGAAGGATGC-AATTT 48394 Query 167476 TCTCACGGCAGCAGTGTCAACTCCTGCTGACGCTATGGGTCATTCTCTTCTTCTACTTTG 167535 | || || || || ||||||||| | | | | || ||| | | ||||| || Sbjct 48393 CTTAACAGCGGCGGTTATCACTCCTGCTAATAGTTTAGCACACTCTTTGTTACTACTATG 48334 Query 167536 GGGTCCTGAGTCTCAGGGGGATTTCATCAGGTGGTGCCAGCTTGGGGGACTCTGGGCTTT 167595 ||| | || ||||||||||| | | || || || | || || || ||| |||| Sbjct 48333 GGGCCTGGAAGAACAGGGGGATTTTACTCGTTGATGTCAATTAGGTGGTCTGTGGACTTT 48274 Query 167596 TGTGGCGCTCCACGGAGCCTTTGCTCTCATAGGATTTATGCTTCGGCAATTTGAG-ATAA 167654 ||| || ||||| || || ||| || ||||| || ||| | || |||||||| || Sbjct 48273 TGTCGCTCTCCATGGGGCTTTTATGCTAATAGGTTTCATGTTACGTCAATTTGAACATGC 48214 Query 167655 GTAGACTAGTAGGTATCCGTCCTTACAATGCGATTGCTTTTTCTGGTCCGATTGCTGTCT 167714 || || | | | || ||||| ||||| ||| | || ||| |||| | ||| | Sbjct 48213 TCAGTCTGTTCAAT-TGCGGCCTTATAATGCAATTTCATTCTCTAGTCCAACCATTGTTT 48155 Query 167715 TT-GTGTCTGTTTTTCTCATCTATCCTCTCGGACAGTCCAGTTGGTTCTTTGCACCGTCG 167773 || || | ||| || || | ||||| | ||||| || ||| |||||||| | | Sbjct 48154 TTTGTTTTTGTATTCCTTGTTTATCCAATGGGACAATCTGGTTAGTTCTTTGTGCTGAGT 48095 Query 167774 TTTGGTGTTGCAGCGATATTTAGATTCCTACTATTCCTACAGGGTTTCCATAACTGGACG 167833 ||||| | | || |||||| |||| | || ||| | || || || | ||| |||||| Sbjct 48094 TTTGGCATAGAAGTTATATTTCAATTCATCCTTTTCTTCCAAGGATTTCCTAATTGGACG 48035 Query 167834 CTCAACCCTTTCCATATGATGGGAGTTGCTGGTATCCTAGGCGGTGCATTGCTTTCTGCA 167893 | ||||| || ||||||||||| ||||| || | |||||| || |||| | | Sbjct 48034 TTAAACCCATTTCATATGATGGGGGTTGCCGGAGTATTAGGCGCAGCTCTGCTATGCTCT 47975 Query 167894 ATCCATGGTGTTACAGTAGAGAATACTCTGTATGAAGATGGTGAGCAAGCAAACACTTTC 167953 |||||||| | ||| |||| || ||||| | |||||| ||| ||||| || ||| Sbjct 47974 ATCCATGGGGCTACCATAGAAAACACTCTATTCAAAGATGATGATGGTGCAAATACCTTC 47915 Query 167954 AAAGCATTTGATACGACTCAGGAAGAGGAAACTTATTCCATGGTCACTGCTAACCGATTC 168013 | || | | | | ||||| | || ||||||||||| ||| ||||| ||||| | || Sbjct 47914 TATGCTTGTAACGCAACTCAAGCTGAAGAAACTTATTCAATGATCACTACTAACAGCTTT 47855 Query 168014 TGGTCT 168019 |||||| Sbjct 47854 TGGTCT 47849 Score = 123 bits (136), Expect = 3e-23 Identities = 208/297 (70%), Gaps = 3/297 (1%) Strand=Plus/Minus Query 168014 TGGTCTCAAATTTTTGGTATTGCTTTCAGCAATAAGCGTTGGTTGCACTTCTTTATGCTT 168073 ||||| ||||| |||||| || |||| |||||| |||||||| || ||||||||||| Sbjct 1009 TGGTCCCAAATATTTGGTGTTTCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGCTA 950 Query 168074 TTCGTTCCTGTCATGGGACTTTGGACAAGTTCTATTGGTATCATCGGTCTCGCACTTAAT 168133 | || | ||| || | | | || | | ||||||| | | | || || || || Sbjct 949 CTTGTACTTGTAATCAGTTTATAGATGACTGCTATTGG-CTAGTTGCCCTGGCTCTGAAC 891 Query 168134 CTTCGTGCTTATGACTTTGTGTCTCAGGAAGTTAGAGCAGCAGAGGATCCAGAGTTTGAA 168193 || |||| ||||| ||| | || ||| || | | |||||||| ||||| || ||||| Sbjct 890 CTATGTGCCTATGA-TTTCT-TCCCAGAAAATCCGTGCAGCAGAAGATCCTGAATTTGAG 833 Query 168194 ACTTTCTATACGAAAAACATCCTCCTCAATGAAGGACTCCGTGCCTGGATGGCTCCAGTA 168253 |||||||| || ||| | || || | ||||| || | | ||| |||||||| | Sbjct 832 ACTTTCTACACCAAATATATTCTTTTAAATGAGGGTATTCATGCGTGGATGGCAGCTCAG 773 Query 168254 GACCAACCACATGAAAACTTTGTATTCCCAGAAGAAGTATTGCCAAGAGGCAACGCT 168310 || || || |||||||| || ||||||| || || || | ||| | || | |||| Sbjct 772 GATCAGCCTCATGAAAATCTTATATTCCCTGAGGAGGTTCTACCATGTGGAATCGCT 716 >seq666 Length=229199 Score = 158 bits (174), Expect = 1e-33 Identities = 182/245 (74%), Gaps = 0/245 (0%) Strand=Plus/Minus Query 167969 ACTCAGGAAGAGGAAACTTATTCCATGGTCACTGCTAACCGATTCTGGTCTCAAATTTTT 168028 ||||| | || ||||||||||| ||||| |||||| | || || ||||||||||| ||| Sbjct 152525 ACTCAAGCTGAAGAAACTTATTCAATGGTTACTGCTTATCGCTTTTGGTCTCAAATCTTT 152466 Query 168029 GGTATTGCTTTCAGCAATAAGCGTTGGTTGCACTTCTTTATGCTTTTCGTTCCTGTCATG 168088 ||| ||||||| |||||| | ||||| || ||||||||| | || || || |||| Sbjct 152465 GGTGTTGCTTTTCTCAATAAAGGCTGGTTACATTTCTTTATGTTATTTGTACCCGTCACC 152406 Query 168089 GGACTTTGGACAAGTTCTATTGGTATCATCGGTCTCGCACTTAATCTTCGTGCTTATGAC 168148 || | |||| ||| ||||||| | | || || || | || || ||||||| |||| Sbjct 152405 GGTTTATGGATGAGTGCTATTGGCGTAGTTGGCCTGGCTTTGAACCTACGTGCTTGTGAC 152346 Query 168149 TTTGTGTCTCAGGAAGTTAGAGCAGCAGAGGATCCAGAGTTTGAAACTTTCTATACGAAA 168208 || | || |||||| | ||||| || ||||| || ||||| ||||||||| | ||| Sbjct 152345 TTCATTTCCCAGGAAATCCATGCAGCGGAAGATCCTGAATTTGAGACTTTCTATGCCAAA 152286 Query 168209 AACAT 168213 || || Sbjct 152285 AATAT 152281 >seq12982 Length=32303 Score = 154 bits (170), Expect = 2e-32 Identities = 304/445 (68%), Gaps = 6/445 (1%) Strand=Plus/Plus Query 166082 ACCGTCTTTATGTTGGTTGGTTTGGCACACTGATGATTCCAACTCTGTTGGCAGCAACCA 166141 |||||||||| | || |||||||| ||||||| || || | ||| | ||||| Sbjct 501 ACCGTCTTTACATCGGATGGTTTGGTGTTTTGATGATCCCTACCTTATTGACCGCAACT- 559 Query 166142 TCTGTT-TCATCGTCGCTTTCGTAGCGGCACCTCCTGTCGATATCGATGGGATCCGTGAG 166200 || || | || || | ||| | || || ||||| || ||||| ||||| || |||||| Sbjct 560 TCCGTACTTATTATCACCTTCATCGCTGCTCCTCCAGTAGATATTGATGGTATTCGTGAG 619 Query 166201 CCCGTAGCAGGCTCTCTAATGTATGGTAACAACATCATCTCTGGTGCTGTTGTCCC--CT 166258 || || | || ||| |||| ||||| |||| || |||||||||||| || | || || Sbjct 620 CCTGTTTCTGGTTCTTTAATTTATGGAAACAGTATTATCTCTGGTGCTATTATTCCTACT 679 Query 166259 CCTCCAACGCAATTGGTCTTCACTTCTATCCCATCTGGGAAGCAGCATCACTTGATGAAT 166318 | ||| || || | || || || || || ||| |||| ||||| ||||||||| Sbjct 680 TATGTGACG--ATCGGATTGCATTTTTACCCAATTTGGAAAGCTGCATCCGTTGATGAAT 737 Query 166319 GGCTTTATAACGGTGGTCCTTTCCAGCTCGTAGTCTTCCACTTCCTCATCGGCATCTATG 166378 || | || || || ||||||| | || | || | || ||| | | || | | Sbjct 738 GGTTATACAATGGCGGTCCTTATGACCTAATTGTTCTACATTTCTTACTTGGTGTAGCTT 797 Query 166379 CCTACATGGGTCGTGAATGGGAATTGTCTTACCGCCTCGGTATGCGTCCTTGGATTTGCG 166438 || |||| |||||| |||||| | || || || |||||||| | ||||||| | Sbjct 798 GTTATATGGATCGTGACTGGGAACTTAGTTTCCATCTGGGTATGCGCCTTTGGATTGTTG 857 Query 166439 TAGCATACTCTGCACCTGTTGCAGCAGCATCCGCAGTCTTCCTGGTCTATCCTTTCGGTC 166498 | ||||| || || |||||||||| || | || | ||| || | || ||| | |||| Sbjct 858 TTGCATATTCAGCTCCTGTTGCAGTTGCTACTGCTATTTTCTTGATTTACCCTATTGGTC 917 Query 166499 AAGGTTCTTTCTCTGACGCAATGCC 166523 ||| ||| ||||| | ||||| Sbjct 918 AAGAAAGTTTTTCTGATGGTATGCC 942 >seq8160 Length=957 Score = 116 bits (128), Expect = 4e-21 Identities = 108/137 (79%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 166686 CACTGAAACTGAGTCTCAAAACTATGGTTACAAGTTTGGTCAAGAAGAAGAGACCTACAA 166745 || ||||| ||||||| || | |||||||| |||| | |||||||||||||||| || Sbjct 322 CAATGAAAATGAGTCTGCTAATGAGGGTTACAAATTTGATTAAGAAGAAGAGACCTATAA 381 Query 166746 CATCGTGGCTGCTCATGGTTACTTCGGTCGCCTGATCTTCCAATACGCTTCCTTCAACAA 166805 || ||||||||||||| ||| || ||||| | ||||||||||| || |||||||| Sbjct 382 TATTGTGGCTGCTCATGATTATTTTGGTCGATTAATCTTCCAATATCCTAGTTTCAACAA 441 Query 166806 CTCTCGCTCGCTGCACT 166822 |||||| || | |||| Sbjct 442 CTCTCGTTCTTTACACT 458 >seq12572 Length=34890 Score = 111 bits (122), Expect = 2e-19 Identities = 186/269 (69%), Gaps = 0/269 (0%) Strand=Plus/Minus Query 167588 TGGGCTTTTGTGGCGCTCCACGGAGCCTTTGCTCTCATAGGATTTATGCTTCGGCAATTT 167647 ||| ||||||| || ||||| || || ||||| || || |||||| | || |||||| Sbjct 26961 TGGACTTTTGTCGCTCTCCATGGGGCTTTTGCACTAATTTTTTTTATGTTACGTCAATTT 26902 Query 167648 GAGATAAGTAGACTAGTAGGTATCCGTCCTTACAATGCGATTGCTTTTTCTGGTCCGATT 167707 || | | | || | | || ||||| ||| | || ||||||||| | Sbjct 26901 GAACTTGCTCGGTCTGTTCAATTGTTTTTTTTTAATGCAATTTCATTCTCTGGTCCGTTC 26842 Query 167708 GCTGTCTTTGTGTCTGTTTTTCTCATCTATCCTCTCGGACAGTCCAGTTGGTTCTTTGCA 167767 ||||| ||||| | | |||| || || ||||| || ||||| || |||||||||||| Sbjct 26841 GCTGTTTTTGTTTTTTTTTTCCTTATTTATCCACTGGGACAATCTGGTTGGTTCTTTGTT 26782 Query 167768 CCGTCGTTTGGTGTTGCAGCGATATTTAGATTCCTACTATTCCTACAGGGTTTCCATAAC 167827 | ||||| || ||||| |||||| ||||| | || ||| | ||| ||||| Sbjct 26781 TTTTTTTTTGGCGTAGCAGCTATATTTCGATTCATCCTTTTCTTCTTTTTTTTTCATAAT 26722 Query 167828 TGGACGCTCAACCCTTTCCATATGATGGG 167856 ||||| | ||||| || ||||||||||| Sbjct 26721 TGGACATTAAACCCATTTCATATGATGGG 26693 >seq12273 Length=37008 Score = 89.7 bits (98), Expect = 6e-13 Identities = 72/87 (83%), Gaps = 0/87 (0%) Strand=Plus/Minus Query 166819 CACTTCTTCCTCGCAGCATGGCCTGTTGTCGGTATCTGGTTTACTGCTCTTGGTGTTAGC 166878 ||||||||| | || || |||||||| || || |||||||| |||||| | ||| |||| Sbjct 29528 CACTTCTTCTTGGCTGCTTGGCCTGTAGTAGGGATCTGGTTCACTGCTTTAGGTATTAGT 29469 Query 166879 ACCATGGCATTCAACCTCAACGGTTTC 166905 || |||||||||||||| || |||||| Sbjct 29468 ACTATGGCATTCAACCTAAATGGTTTC 29442 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 567108371785600