Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dichanthelium_20oligosanthes_20[genbank_20GCA_5F001633215.2_202016- 09-29] 17,436 sequences; 589,166,415 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq13858 127 4e-24 seq15348 93.3 9e-14 seq12465 93.3 9e-14 seq11678 93.3 9e-14 seq11181 93.3 9e-14 seq10019 93.3 9e-14 seq6062 93.3 9e-14 seq5542 93.3 9e-14 seq14226 91.5 3e-13 seq13713 91.5 3e-13 seq10487 91.5 3e-13 seq8183 91.5 3e-13 seq8084 91.5 3e-13 seq9974 86.0 1e-11 seq110 86.0 1e-11 >seq13858 Length=133588 Score = 127 bits (140), Expect = 4e-24 Identities = 481/739 (65%), Gaps = 32/739 (4%) Strand=Plus/Plus Query 251563 TCGAAGAAATTAGACTTGCCCTCCAGAGAGATTAGCTCCATGAAGTCGAAGGGGTTTGTG 251622 || ||||| || | ||| |||| ||| ||||| |||||||| ||||||| ||||| | | Sbjct 59788 TCAAAGAAGTTTGTCTTCCCCTGCAGCGAGATGAGCTCCATCCAGTCGAATGGGTTGGCG 59847 Query 251623 GCATTGTAC-TGCT-TGGGATGGCCAAGTGCTACGAAGATGCGGTCTGCCACAAACTCCA 251680 || |||||| | || | | | ||| || || | || | |||||| || || ||||| | Sbjct 59848 GCGTTGTACATCCTCTTGCA--GCCGAGCGCCATGAGCAGGCGGTCAGCAACGAACTCGA 59905 Query 251681 GATACTGTCCCATCAGTTCAGAGTTCATGCCAATCATA-CGACAAGGAATTGCCTCACAG 251739 ||||| | ||| || | ||||||||| | | |||| ||| || || ||| Sbjct 59906 TGTACTGGCTCATGAGCCCGCCGTTCATGCCGACGAGCGCGACCGGGAGC-GCGTCGCAG 59964 Query 251740 ATGAATTCCTTTTCGTTGGCAACTGCCTCCTCCACAATTGCCTTCACCTGTGCCAGAGAC 251799 | ||| || ||| || | || || || | || || | || | || Sbjct 59965 ACGAACTCGCGCTCGATGTCGACGGCGTCGGCGACGATCTCGCGGACGCGGTCCTCGTCG 60024 Query 251800 AGCTTGTTCTCCAGCTTTGAG----TACAGGAGCTCGCCAAACTGTTGGTGCAGACCCTC 251855 |||||| ||| ||| || ||||| | | || | ||| || ||||| Sbjct 60025 AGCTTG----CCACGGAGGAGGTCGTAGAGGAGGCAGGCGAAGTCGCAGTGGAGGCCCTC 60080 Query 251856 GTCGCGACTGATGAACTCGTTGGACAGACCCAGGCCAGGCATCACCCCACGGTTCCTGAG 251915 |||||| ||||| ||||||||| | ||||| ||||| | || || ||| |||| Sbjct 60081 GTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGGCCCGGCATGAGGCCGCGCTTCTTGAG 60140 Query 251916 CCAGAAGATTGCGCAAAAGGATCCAGAGAACAGCAGACCCTCGACACACACCCATGCAAC 251975 ||||||||| ||||| ||||| || ||||| | | |||||||| || | | || || Sbjct 60141 CCAGAAGATGGCGCAGAAGGAGCCCGAGAAGAAGATGCCCTCGACGCAGGCGAAGGCGAC 60200 Query 251976 AAGGCGCTCAGC-AAACG-ACTTGTCCTGCGA-CAAGAACTTCTGTGCCCATGCTGCCTT 252032 |||||||| || || || | || ||| | || | || ||||| | ||||| Sbjct 60201 GAGGCGCTCGGCGAAGCGCTCCCCGCCGTCGATCCAGCGCATC---GCCCAGTCGGCCTT 60257 Query 252033 CTTTCCAACCGCGGGGATTGTTTCGATTGCATCAAAGAGAGAGTTCCGCTCGGCATCGTC 252092 | || ||||||| || ||||| || ||||| || | |||||| |||| Sbjct 60258 GCGGCGGACGGCGGGGACGGTGTCGATGGCGCGGAAGAGGCGGTCCTTCTCGGCGCCGTC 60317 Query 252093 CTCGATGAGCGCATCAAGCAGGAGAGAGTACATCTCCGAATGGATGGATTCGTTGAACAT 252152 |||| || || ||||| || |||||||||||||| |||||| ||| || || Sbjct 60318 GCGGATGTACGTCTCCAGCAGCAGCGAGTACATCTCCGAGTGGATGTTCTCGATGGCGAT 60377 Query 252153 CTGGTAAGCATAGAATAGACGCGCGGAAGGGTCGGTGACTT--CCGT-GGA---AAAGTT 252206 |||| | |||||| || ||||| | |||| ||| | ||| ||| ||| Sbjct 60378 CTGGAAGCCATAGA--AGGCGCGC----GCCTCGGCGACCTGCACGTCGGACATGAAGCG 60431 Query 252207 GTTTGCAATGTTCTCCATCACCATGCCATCGCTGCCTGCAAAGAAGCCAAGAATGGTCTT 252266 | || | |||||| | ||| ||||| ||| | | || |||||| | || | | Sbjct 60432 GGAGGCGAGGTTCTCGAGCACGATGCCGTCGGAGGCGGCGAAGAAGGCGAGCACGTGGGA 60491 Query 252267 GATGAAGTGACGCTCATCG 252285 ||||||||| ||||| ||| Sbjct 60492 GATGAAGTGGCGCTCGTCG 60510 >seq15348 Length=125033 Score = 93.3 bits (102), Expect = 9e-14 Identities = 60/66 (91%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| |||||||||||||||||||| || ||||||| || ||||||||||||||||| Sbjct 9747 AGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 9688 Query 142563 CCCCAC 142568 |||||| Sbjct 9687 CCCCAC 9682 >seq12465 Length=35640 Score = 93.3 bits (102), Expect = 9e-14 Identities = 60/66 (91%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| |||||||||||||||||||| || ||||||| || ||||||||||||||||| Sbjct 11509 AGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 11568 Query 142563 CCCCAC 142568 |||||| Sbjct 11569 CCCCAC 11574 >seq11678 Length=41425 Score = 93.3 bits (102), Expect = 9e-14 Identities = 60/66 (91%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| |||||||||||||||||||| || ||||||| || ||||||||||||||||| Sbjct 12034 AGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 11975 Query 142563 CCCCAC 142568 |||||| Sbjct 11974 CCCCAC 11969 >seq11181 Length=155859 Score = 93.3 bits (102), Expect = 9e-14 Identities = 60/66 (91%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| |||||||||||||||||||| || ||||||| || ||||||||||||||||| Sbjct 94516 AGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 94457 Query 142563 CCCCAC 142568 |||||| Sbjct 94456 CCCCAC 94451 >seq10019 Length=57599 Score = 93.3 bits (102), Expect = 9e-14 Identities = 60/66 (91%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| |||||||||||||||||||| || ||||||| || ||||||||||||||||| Sbjct 7515 AGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 7456 Query 142563 CCCCAC 142568 |||||| Sbjct 7455 CCCCAC 7450 >seq6062 Length=92985 Score = 93.3 bits (102), Expect = 9e-14 Identities = 60/66 (91%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| |||||||||||||||||||| || ||||||| || ||||||||||||||||| Sbjct 84685 AGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 84626 Query 142563 CCCCAC 142568 |||||| Sbjct 84625 CCCCAC 84620 >seq5542 Length=349524 Score = 93.3 bits (102), Expect = 9e-14 Identities = 60/66 (91%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| |||||||||||||||||||| || ||||||| || ||||||||||||||||| Sbjct 35707 AGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 35766 Query 142563 CCCCAC 142568 |||||| Sbjct 35767 CCCCAC 35772 >seq14226 Length=131416 Score = 91.5 bits (100), Expect = 3e-13 Identities = 59/65 (91%), Gaps = 0/65 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||||| |||||||||||||||||||| || ||||||| || |||||||||||||||||| Sbjct 48840 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 48781 Query 142564 CCCAC 142568 ||||| Sbjct 48780 CCCAC 48776 >seq13713 Length=27948 Score = 91.5 bits (100), Expect = 3e-13 Identities = 59/65 (91%), Gaps = 0/65 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||||| |||||||||||||||||||| || ||||||| || |||||||||||||||||| Sbjct 1935 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 1994 Query 142564 CCCAC 142568 ||||| Sbjct 1995 CCCAC 1999 >seq10487 Length=52512 Score = 91.5 bits (100), Expect = 3e-13 Identities = 59/65 (91%), Gaps = 0/65 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||||| |||||||||||||||||||| || ||||||| || |||||||||||||||||| Sbjct 48874 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 48815 Query 142564 CCCAC 142568 ||||| Sbjct 48814 CCCAC 48810 >seq8183 Length=87020 Score = 91.5 bits (100), Expect = 3e-13 Identities = 59/65 (91%), Gaps = 0/65 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||||| |||||||||||||||||||| || ||||||| || |||||||||||||||||| Sbjct 47492 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 47551 Query 142564 CCCAC 142568 ||||| Sbjct 47552 CCCAC 47556 >seq8084 Length=202404 Score = 91.5 bits (100), Expect = 3e-13 Identities = 59/65 (91%), Gaps = 0/65 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||||| |||||||||||||||||||| || ||||||| || |||||||||||||||||| Sbjct 61749 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 61690 Query 142564 CCCAC 142568 ||||| Sbjct 61689 CCCAC 61685 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||| |||||||||||| || ||||||| || ||||||||||||||||| Sbjct 52010 AGCCCGTCTAGCTCACTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 52069 Query 142563 CCCCAC 142568 |||||| Sbjct 52070 CCCCAC 52075 >seq9974 Length=58277 Score = 86.0 bits (94), Expect = 1e-11 Identities = 58/65 (89%), Gaps = 0/65 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||||| ||||||||| |||||||||| || ||||||| || |||||||||||||||||| Sbjct 21317 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 21376 Query 142564 CCCAC 142568 ||||| Sbjct 21377 CCCAC 21381 >seq110 Length=114224 Score = 86.0 bits (94), Expect = 1e-11 Identities = 58/65 (89%), Gaps = 0/65 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||||| ||||||||| |||||||||| || ||||||| || |||||||||||||||||| Sbjct 7949 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 8008 Query 142564 CCCAC 142568 ||||| Sbjct 8009 CCCAC 8013 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027607182543676