Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dichanthelium_20oligosanthes_20[genbank_20GCA_5F001633215.2_202016- 09-29] 17,436 sequences; 589,166,415 total letters Query= NC_009011.2 Length=131331 Score E Sequences producing significant alignments: (Bits) Value seq9352 113 4e-20 seq11736 107 2e-18 seq12418 102 7e-17 seq12004 102 7e-17 seq12936 100 2e-16 seq12070 89.7 4e-13 >seq9352 Length=67289 Score = 113 bits (124), Expect = 4e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| ||||| || | | || | || | || || || || || |||||||| ||| Sbjct 47148 ATACCACCACGCAGGCGGAGCACCAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCG 47207 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | ||||| ||| ||||| || || |||||| ||||||| ||||| |||||||| Sbjct 47208 GCAAGGGTACGGCCATCCTCAAGCTGCTTGCCAGCGAAGATGAGGCGCTGCTGGTCCGGG 47267 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 |||||||| || ||||| |||||| || | | || | |||||| | ||| || Sbjct 47268 GGAATGCCCTCCTTGTCCTGGATCTTTGCCTTCACGTTGTCGATGGTGTCCGAGGACTCA 47327 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || || | ||| | || ||||| || || || || |||||||||||||| Sbjct 47328 ACCTCAAGGGTGATGGTCTTGCCAGTGAGGGTCTTGACAAAAATCTGCAT 47377 Score = 95.1 bits (104), Expect = 1e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| ||||| || | || || | || | || ||||| || || |||||||| || Sbjct 47376 ATACCACCACGCAGACGCAGCACCAGGTGGAGGGTGGATTCCTTCTGGATGTTGTAGTCA 47435 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | || || || ||||| || || ||||| ||||||| | ||| ||||| || Sbjct 47436 GCGAGGGTGCGGCCGTCCTCAAGCTGCTTGCCAGCAAAGATGAGCCTCTGCTGGTCAGGG 47495 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 ||||||||||| ||||| ||||| || | | || | |||||| | ||| ||| Sbjct 47496 GGAATGCCTTCCTTGTCCTGGATCTTAGCCTTGACATTGTCGATGGTGTCCGAGGACTCG 47555 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || || | ||| | || |||||||| || || || || || |||||||| Sbjct 47556 ACCTCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTAACGAAGATCTGCAT 47605 >seq11736 Length=148999 Score = 107 bits (118), Expect = 2e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || ||||| || |||||||||||||| || ||||| || || || || |||||| Sbjct 10428 GTGGATTCCTTCTGAATGTTGTAATCTGCCAAGGTACGCCCGTCCTCCAGCTGCTTACCA 10369 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 ||| ||||||| | ||| || || |||||||| || || ||||| ||||| || Sbjct 10368 GCGAAGATGAGCCTCTGCTGATCAGGAGGAATCCCCTCCTTGTCCTGGATCTTGGCCTTC 10309 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | |||| |||||| | | ||| || |||| ||| | || ||||| ||||| || Sbjct 10308 ACATTATCAATGGTGTCAGAGCTTTCCACTTCCAGGGTGATGGTCTTGCCAGTCAGTGTC 10249 Query 114366 TTTACAAAAATCTGCAT 114382 || ||||| |||||||| Sbjct 10248 TTGACAAAGATCTGCAT 10232 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 ||||| || || ||||||||||| || || || || || || ||||| || ||| Sbjct 9972 GTAGACTCCTTCTGAATGTTGTAGTCAGCCAGGGTGCGGCCGTCCTCTAGTTGCTTGCCA 9913 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 || ||||||| | ||| |||||||| || ||||| || ||||| ||||| ||| Sbjct 9912 GCAAAGATGAGCCTCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCTTTG 9853 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | |||| ||||| | | ||||| || | || | || ||||| || || || Sbjct 9852 ACATTGTCAATAGTGTCTGAGCTCTCGACCTCGAGAGTGATGGTCTTGCCAGTGAGGGTC 9793 Query 114366 TTTACAAAAATCTGCAT 114382 || ||||| |||||||| Sbjct 9792 TTAACAAAGATCTGCAT 9776 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 |||||||| || ||||||||||| || || || || ||| || || || || ||| Sbjct 10200 GTAGATTCCTTCTGAATGTTGTAGTCAGCCAATGTGCGCCCATCCTCCAGCTGCTTCCCA 10141 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 || ||||||| | ||| |||||||| || ||||| || ||||| |||||| || Sbjct 10140 GCAAAGATGAGCCTCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGAATCTTGGCCTTG 10081 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | || | |||||||| | || || || | || | || || || || ||||| Sbjct 10080 ACATTGTCGATGGTGTCGGAGCTCTCAACCTCGAGAGTGATGGTCTTCCCTGTGAGAGTC 10021 Query 114366 TTTACAAAAATCTGCAT 114382 || || || |||||||| Sbjct 10020 TTGACGAAGATCTGCAT 10004 >seq12418 Length=36051 Score = 102 bits (112), Expect = 7e-17 Identities = 140/196 (71%), Gaps = 0/196 (0%) Strand=Plus/Plus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || || || || ||||||||||| || || ||||| ||| ||||| || || ||| Sbjct 33580 GTGGACTCCTTCTGAATGTTGTAGTCAGCCAAGGTACGGCCATCCTCAAGCTGCTTGCCA 33639 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 ||| |||| | ||||| ||||||||||| || ||||| ||||| |||||| ||| Sbjct 33640 GCGAAGATCAACCGCTGCTGGTCCGGAGGGATACCTTCCTTGTCCTAAATCTTCGCCTTT 33699 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | || | ||||| | ||| ||||| || | || | || ||||| || || || Sbjct 33700 ACATTATCGATAGTGTCAGAGGACTCGACTTCAAGAGTAATAGTCTTGCCAGTGAGGGTC 33759 Query 114366 TTTACAAAAATCTGCA 114381 || || |||||||||| Sbjct 33760 TTGACGAAAATCTGCA 33775 Score = 87.8 bits (96), Expect = 2e-12 Identities = 87/113 (77%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || || ||||| |||||||||||||| || || || ||| ||||| || || || Sbjct 33354 GTGGACTCTTTCTGAATGTTGTAATCAGCCAAGGTGCGGCCATCCTCAAGCTGCTTCCCG 33413 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTT 114298 || |||||||||||||||||||| | |||||||| || ||||| |||||| Sbjct 33414 GCAAAGATGAGACGCTGTTGGTCCAGTGGAATGCCCTCCTTGTCCTGAATCTT 33466 >seq12004 Length=146743 Score = 102 bits (112), Expect = 7e-17 Identities = 143/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 114186 GTAGATTCTTTTTGAATGTTGTAATC-GCTCATAGTACGAGAATCTTCAAGTTGTTTACC 114244 || || ||||| ||||||||||| || ||| | || ||| ||| ||||| || || || Sbjct 145367 GTGGACTCTTTCTGAATGTTGTAGTCAGCTAAG-GTGCGACCATCCTCAAGCTGCTTCCC 145309 Query 114245 AGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTT 114304 ||| ||||||||||||| |||||||| |||||||| || ||||| |||||| || Sbjct 145308 CGCGAAGATGAGACGCTGCTGGTCCGGTGGAATGCCCTCCTTGTCCTGAATCTTCGCCTT 145249 Query 114305 TAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGT 114364 | | || | ||||| | ||| || || || | || | || || || |||| || Sbjct 145248 CACATTGTCGATTGTGTCTGAGGACTCAACCTCTAGTGTGATGGTCTTTCCAGTCAAGGT 145189 Query 114365 TTTTACAAAAATCTGCAT 114382 || ||||| |||||||| Sbjct 145188 CTTCACAAAGATCTGCAT 145171 >seq12936 Length=140512 Score = 100 bits (110), Expect = 2e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 || || |||||||| | | || | || | || || || ||||||||||||||||| Sbjct 38867 ATGCCTCCACGTAGACGGAGGACAAGGTGCAAGGTGGACTCCTTTTGAATGTTGTAATCT 38926 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | ||||| || || || || || |||||| |||| || || || ||||| ||| Sbjct 38927 GCAAGCGTACGCCCGTCCTCGAGCTGCTTGCCAGCGAAGATAAGGCGTTGCTGGTCTGGA 38986 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 ||||| ||||| ||||| ||||||| || | | |||| ||||| | || || Sbjct 38987 GGAATTCCTTCCTTGTCCTGAATCTTTGCCTTGACATTGTCAATCGTGTCAGAAGACTCC 39046 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || || | ||| | || ||||| || || || || ||||| |||||||| Sbjct 39047 ACCTCAAGGGTGATAGTCTTGCCAGTGAGGGTCTTCACAAAGATCTGCAT 39096 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 114155 ACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCT 114214 ||| ||||| || | || || | ||| | || ||||| || || ||||||||||| Sbjct 38413 ACCACCACGAAGGCGCAGGACAAGATGGAGGGTGGATTCCTTCTGGATGTTGTAATCCGC 38472 Query 114215 CATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGG 114274 || ||||| || ||||| || || || || | ||||| ||||| |||||||| || Sbjct 38473 CAGGGTACGCCCGTCCTCAAGCTGCTTGCCGGCAAAAATGAGGCGCTGCTGGTCCGGGGG 38532 Query 114275 AATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGAC 114334 |||||| || ||||| ||||| || | | || | ||||| | || ||||| Sbjct 38533 AATGCCCTCCTTGTCCTGGATCTTCGCCTTCACATTGTCGATAGTGTCTGAAGACTCGAC 38592 Query 114335 GTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 |||| || | || |||||||| || || || || || |||||||| Sbjct 38593 CTCCAAAGTGATGGTCTTGCCGGTGAGCGTCTTCACGAAGATCTGCAT 38640 Score = 93.3 bits (102), Expect = 4e-14 Identities = 141/201 (70%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || |||| || || |||||||| || | || || ||| || || || || | Sbjct 38672 GTTGATTACTTCTGGATGTTGTAGTCAGCAAGGGTGCGGCCATCCTCGAGCTGCTTCCTG 38731 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 || ||||||| ||||| |||||||||||||| || || ||||| |||||| || Sbjct 38732 GCAAAGATGAGGCGCTGCTGGTCCGGAGGAATACCCTCGTTGTCCTGGATCTTTGCCTTC 38791 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | | | |||||| | ||| || || |||| ||| | || |||||||| || || Sbjct 38792 ACATTGTTGATGGTGTCAGAGGACTCCACCTCCAAGGTGATGGTCTTGCCGGTGAGGGTC 38851 Query 114366 TTTACAAAAATCTGCATGGCT 114386 || ||||||||||||||| || Sbjct 38852 TTCACAAAAATCTGCATGCCT 38872 Score = 84.2 bits (92), Expect = 2e-11 Identities = 130/186 (70%), Gaps = 0/186 (0%) Strand=Plus/Plus Query 114197 TTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAG 114256 || |||||||||||| | | | | | | ||| ||||| || || || || ||||| || Sbjct 41987 TTCAATGTTGTAATCAGTAAGTGAATGGGCATCCTCAAGCTGCTTGCCGGCATAGATAAG 42046 Query 114257 ACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAAC 114316 ||||| ||||| | ||||| || || |||| ||||||| || | | || | Sbjct 42047 GCGCTGCTGGTCTGAGGGAATCCCCTCCTTGTACTGAATCTTTGCCTTGACTTTGTCGAT 42106 Query 114317 GGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAAT 114376 ||||| | || || || || | ||| | ||| ||||| || ||||| || ||||| || Sbjct 42107 CGTGTCAGATGACTCCACCTCGAGGGTTATCGTCTTGCCAGTTAGAGTCTTCACAAAGAT 42166 Query 114377 CTGCAT 114382 |||||| Sbjct 42167 CTGCAT 42172 >seq12070 Length=146516 Score = 89.7 bits (98), Expect = 4e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || || || || || |||||||| || || || || ||| || || || || ||| Sbjct 65926 GTGGACTCCTTCTGGATGTTGTAGTCCGCCAGGGTGCGGCCATCCTCCAGCTGCTTGCCA 65985 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 ||| ||||||||||||| |||||||| || ||||| || ||||| ||||| || Sbjct 65986 GCGAAGATGAGACGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTTCGCCTTC 66045 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | || | ||||| | ||| ||||| || | || | || |||||||| || || Sbjct 66046 ACGTTGTCGATCGTGTCCGAGGACTCGACCTCAAGCGTAATGGTCTTGCCGGTGAGGGTC 66105 Query 114366 TTTACAAAAATCTGCAT 114382 || || || |||||||| Sbjct 66106 TTCACGAAGATCTGCAT 66122 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 ||||| || || || |||||||| || || || || ||| || || || || ||| Sbjct 65022 GTAGACTCCTTCTGGATGTTGTAGTCCGCCAGGGTGCGGCCATCCTCCAGCTGCTTGCCA 65081 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 || ||||||||||||| |||||||| || ||||| || || || ||||| || Sbjct 65082 GCAAAGATGAGACGCTGCTGGTCCGGGGGGATGCCCTCCTTATCCTGGATCTTCGCCTTC 65141 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | || | |||||| | || || || |||| || | || ||||| || ||||| Sbjct 65142 ACGTTGTCGATGGTGTCAGATGACTCCACCTCCAAAGTGATGGTCTTGCCAGTAAGAGTC 65201 Query 114366 TTTACAAAAATCTGCAT 114382 || || || |||||||| Sbjct 65202 TTCACGAAGATCTGCAT 65218 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 420045120914832