Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dichanthelium_20oligosanthes_20[genbank_20GCA_5F001633215.2_202016- 09-29] 17,436 sequences; 589,166,415 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq13858 356 4e-93 seq8389 212 1e-49 seq16195 141 2e-28 seq10755 127 4e-24 >seq13858 Length=133588 Score = 356 bits (394), Expect = 4e-93 Identities = 595/850 (70%), Gaps = 35/850 (4%) Strand=Plus/Minus Query 42312 TACAAGAAGGCGCAGTTCTCCAACTGGACCGCCGAGGAGATTGACCT---GGCCAAGGAC 42368 |||||||||||| | ||| |||||||||||||||| | ||||| |||| ||| Sbjct 60596 TACAAGAAGGCGGTGGCGTCCTTCTGGACCGCCGAGGAGGTGGACCTCTCGGCC---GAC 60540 Query 42369 ACGGCCGGCTGGGAGTCA---CTGTCTGAGAACGAAAAGTTTTTCCTCAAAAACATACTG 42425 || | |||||| || || || |||| ||| || || | || Sbjct 60539 GCGCGCCACTGGGATTCGGCGCTCTCCCCCGACGAGCGCCACTTCATCTCCCACGTGCTC 60480 Query 42426 GCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAGGTTCATGAAA 42485 ||||||||||||||||| |||||||| || |||||||| ||| || | |||||| Sbjct 60479 GCCTTCTTCGCCGCCTCCGACGGCATCGTGCTCGAGAACCTCGCCTCCCGCTTCATGTCC 60420 Query 42486 GAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCATAGAGAACGTG 42545 || |||||| | ||||||||| |||||| ||||||||||| ||||| |||||| | Sbjct 60419 GACGTGCAGGTCGCCGAGGCGCGCGCCTTCTATGGCTTCCAGATCGCCATCGAGAACATC 60360 Query 42546 CACTCTGAGGTGTACGCCAAACTGCTCAACACGTACATCCTGGATCCCGTCGAGCGTAAC 42605 ||||| ||| ||||| | ||||| | |||||||||| || || |||| || Sbjct 60359 CACTCGGAGATGTACTCGCTGCTGCTGGAGACGTACATCCGCGACGGCGCCGAGAAGGAC 60300 Query 42606 GGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGACTGGGCGCTC 42665 | || ||| ||||| || || | ||| | || ||||| ||||||||| | Sbjct 60299 CGCCTCTTCCGCGCCATCGACACCGTCCCCGCCGTCCGCCGCAAGGCCGACTGGGCGATG 60240 Query 42666 AACTGGATCGAGAGTCCCGA-CGCAACGTTCGGCGAGAGGCTGGTAGCCTTTACCGCCGT 42724 ||||||||| | || ||| |||| |||| | || || ||||| || ||| Sbjct 60239 CGCTGGATCGACGGCGGGGAGCGC----TTCGCCGAGCGCCTCGTCGCCTTCGCCTGCGT 60184 Query 42725 CGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAGAA-GGTGT 42783 |||||||||||||||||||||| ||||| | ||||||||||||||||| || || | Sbjct 60183 CGAGGGCATCTTCTTCTCGGGCTCCTTCTGCGCCATCTTCTGGCTCAAGAAGCGCGGCCT 60124 Query 42784 CGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGCTGCATAGGG 42843 | ||||| || ||||||||||| ||||| |||||| | | |||||||| || || | | Sbjct 60123 C-ATGCCGGGCCTCACCTTCTCCAACGAGCTCATCTCCCGCGACGAGGGCCTCCACTGCG 60065 Query 42844 ACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACAAGCCCTCGA--AGGAGCGGGT 42901 |||| ||||||||||| | | || || |||| | ||||| |||| |||| || || Sbjct 60064 ACTTCGCCTGCCTCCTCTAC--GA-CCTCCTCCGTGGCAAGC--TCGACGAGGACCGCGT 60010 Query 42902 CCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTCCTCACGCAGTCGCTGCC 42961 ||| | ||| || | || ||||| || |||||| |||||| || | |||| || Sbjct 60009 CCGCGAGATCGTCGCCGACGCCGTCGACATCGAGCGCGAGTTCGTCTGCGACGCGCTCCC 59950 Query 42962 CGTGTCCCTGGTCGGCATGAACCACGACCTCATGTGCAAGTACATCCAGTACGTCGCCGA 43021 || | || |||||||||||| || |||||| || |||||||| ||| ||| || || Sbjct 59949 GGTCGCGCTCGTCGGCATGAACGGCGGGCTCATGAGCCAGTACATCGAGTTCGTTGCTGA 59890 Query 43022 CCATCTCCTGTGCCAGATGGGTCTCAGCCGCC------TCTACAACACGCCGTGCCCCTT 43075 || || || |||| ||| || || | |||||| | | ||| || Sbjct 59889 CCGCCTGCTC------ATGGCGCTCGGCTGCAAGAGGATGTACAACGCCGCCAACCCATT 59836 Query 43076 CGACTTTATGGAGAACATCTCGTTGGAGGGCAAGACCAACTTTTTCGAGAAGCGCGTCGC 43135 ||||| |||||| ||||||| || |||| ||||| ||||| || ||||||||||||| Sbjct 59835 CGACTGGATGGAGCTCATCTCGCTGCAGGGGAAGACAAACTTCTTTGAGAAGCGCGTCGG 59776 Query 43136 CGACTACCAG 43145 || |||||| Sbjct 59775 GGAGTACCAG 59766 >seq8389 Length=83750 Score = 212 bits (234), Expect = 1e-49 Identities = 261/355 (74%), Gaps = 5/355 (1%) Strand=Plus/Plus Query 42423 CTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAGGTTCATG 42482 || ||||||||||||||||| |||||||| || |||||||||||| || | |||||| Sbjct 80077 CTCGCCTTCTTCGCCGCCTCCGACGGCATCGTGCTCGAGAACCTGGCCTCCCGCTTCATG 80136 Query 42483 AAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCATAGAGAAC 42542 || |||||| | ||||| ||| |||||||||||||||||| ||||| |||||| Sbjct 80137 TCCGACGTGCAGGTCGCCGAGGCCCGCGCCTTCTACGGCTTCCAGATCGCCATCGAGAAC 80196 Query 42543 GTGCACTCTGAGGTGTACGCCAAACTGCTCAACACGTACATCCTGGATCCCGTCGAGCGT 42602 | ||||| ||| ||||| | |||||| | || ||||||| || || |||| Sbjct 80197 ATCCACTCGGAGATGTACTCGCTGCTGCTCGAGACCTACATCCGCGACGGCGCCGAGAAG 80256 Query 42603 AACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGACTGGGCG 42662 || | |||||| ||||| || || | ||| | || | ||||| |||||||| Sbjct 80257 GACCGCCTGTTCCGCGCCATCGACACTGTCCCCGCCGTCCGGCGCAAGGCCGACTGGGCC 80316 Query 42663 CTCAACTGGATCGAGAGTCCCGA-CGCAACGTTCGGCGAGAGGCTGGTAGCCTTTACCGC 42721 | ||||||||| | ||| ||| |||| |||| | || || ||||| || Sbjct 80317 ATGCGCTGGATCGACGGCGGCGAGCGC----TTCGCCGAGCGCCTCGTCGCCTTCGCCTG 80372 Query 42722 CGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAG 42776 ||||||||||||||||||||||||| ||||| | ||||||||||||||||| || Sbjct 80373 CGTCGAGGGCATCTTCTTCTCGGGCTCCTTCTGCGCCATCTTCTGGCTCAAGAAG 80427 >seq16195 Length=15917 Score = 141 bits (156), Expect = 2e-28 Identities = 218/305 (71%), Gaps = 9/305 (3%) Strand=Plus/Plus Query 42722 CGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAG-AAGG 42780 ||| |||||||||||||||| |||| ||||| | ||||||| ||||||||| || || Sbjct 112 CGTAGAGGGCATCTTCTTCTTGGGCTCCTTCTGCGCCATCTTTTGGCTCAAGAAGCGTGG 171 Query 42781 TGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGCTGCATA 42840 || ||||| || ||||||||||| ||||| |||||| | | |||||||| ||||| Sbjct 172 CCTC-ATGCCGGGCCTCACCTTCTCCAACGAGCTCATCTCCCGCGACGAGGGCCTGCACT 230 Query 42841 GGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACAAGCCCTCGA--AGGAGCG 42898 | ||||| |||||||||| | || || ||| | |||| | || ||| || Sbjct 231 GCGACTTCGCCTGCCTCC--TCAAYGA-CCTCCTTCGTAGCAAG--GTTGACGAGGCCCG 285 Query 42899 GGTCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTCCTCACGCAGTCGCT 42958 ||||| | ||| || | || ||||| | | |||| ||||| || | |||| Sbjct 286 CGTCCGCGAGATCGTCGCCGACGCCGTCAACACCGAGCGCGAGTTTGTCTGCGACGCGCT 345 Query 42959 GCCCGTGTCCCTGGTCGGCATGAACCACGACCTCATGTGCAAGTACATCCAGTACGTCGC 43018 ||||| | || |||||||||||| | |||||| || |||||||| ||| ||||| Sbjct 346 CCCCGTCGCGCTTGTCGGCATGAACGGTGGACTCATGAGCCAGTACATCGAGTTCGTCGT 405 Query 43019 CGACC 43023 |||| Sbjct 406 AGACC 410 >seq10755 Length=49669 Score = 127 bits (140), Expect = 4e-24 Identities = 216/308 (70%), Gaps = 15/308 (5%) Strand=Plus/Plus Query 42722 CGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAGAAGGT 42781 ||| ||||||||||||||||||||| |||| | ||||||||||||||||| || | Sbjct 35747 CGTAGAGGGCATCTTCTTCTCGGGCTCCTTTTGCGCCATCTTCTGGCTCAAGAAG-CGCA 35805 Query 42782 GTC-GATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGCTGCATA 42840 | | |||| || ||||||||||| | ||| |||||| | | || ||||| || || Sbjct 35806 GCCTCATGCTGGGCCTCACCTTCTCCATCGAGCTCATCTCCCGCGATGAGGGCCTACACT 35865 Query 42841 GGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCA---CAAGCCCTCGA--AGGA 42895 | ||||| ||||||||||| | | ||||| || |||| |||| ||| Sbjct 35866 GCGACTTCGCCTGCCTCCT------CAACGACCTCCTTCATAGCAAG--GTCGACGAGGC 35917 Query 42896 GCGGGTCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTCCTCACGCAGTC 42955 | ||||| | |||||| | || ||| | | | | || ||||| || | | Sbjct 35918 CTGCGTCCGCGAGATCATCGCTGACGCCATCAACACCAAGCGTGAGTTTGTCTGCGACGC 35977 Query 42956 GCTGCCCGTGTCCCTGGTCGGCATGAACCACGACCTCATGTGCAAGTACATCCAGTACGT 43015 ||| ||||| | || |||||||||||| || |||||| || |||||||| ||| ||| Sbjct 35978 GCTCCCCGTCGCGCTTGTCGGCATGAACGGCGGACTCATGAGCCAGTACATCGAGTTCGT 36037 Query 43016 CGCCGACC 43023 ||| |||| Sbjct 36038 CGCAGACC 36045 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944133381271360