Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dichanthelium_20oligosanthes_20[genbank_20GCA_5F001633215.2_202016- 09-29] 17,436 sequences; 589,166,415 total letters Query= NC_009503.1 Length=124121 Score E Sequences producing significant alignments: (Bits) Value seq11548 113 4e-20 seq12936 98.7 8e-16 seq15625 96.9 3e-15 seq1832 93.3 3e-14 seq12418 91.5 1e-13 seq11736 91.5 1e-13 seq12004 87.8 1e-12 seq9492 86.0 5e-12 seq8841 84.2 2e-11 seq9352 82.4 6e-11 seq9070 82.4 6e-11 >seq11548 Length=265335 Score = 113 bits (124), Expect = 4e-20 Identities = 108/136 (79%), Gaps = 2/136 (1%) Strand=Plus/Minus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 || || ||||| || |||||||| || || |||||||||||||| |||||||| ||||| Sbjct 39570 CCACCCCTCAGGCGGAGCACCAGGTGGAGAGTGCTCTCCTTCTGGATGTTGTAGTCTGC- 39512 Query 33961 AATTGT-CGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGG 34019 || || || | || |||| ||||||||| ||||| |||||||||||||| ||| || Sbjct 39511 AAGGGTGCGGCCATCCTCCAGTTGCTTGCCAGCAAAAATCAGGCGCTGCTGGTCCGGGGG 39452 Query 34020 CACGCTCTCTTTGTCC 34035 | || ||| |||||| Sbjct 39451 AATGCCCTCCTTGTCC 39436 Score = 89.7 bits (98), Expect = 4e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 33910 AGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCAATTGTCGC 33969 || || |||||||| || || ||| ||||||||| |||||||| || || | || Sbjct 39789 AGACGGAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGG 39730 Query 33970 TCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGCACGCTCTCT 34029 | || |||| |||||||||||||||||||| |||||||| ||| || | || ||| Sbjct 39729 CCATCCTCCAGCTGCTTGCCGGCAAATATCAGACGCTGCTGGTCCGGGGGGATGCCCTCC 39670 Query 34030 TTGTCCATAATTTT 34043 |||||| ||||| Sbjct 39669 TTGTCCTGGATTTT 39656 Score = 86.0 bits (94), Expect = 5e-12 Identities = 161/231 (70%), Gaps = 8/231 (3%) Strand=Plus/Minus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 || || || || || |||||||| || || |||||||||||||| |||||||| || || Sbjct 38874 CCACCCCTGAGACGGAGCACCAGGTGGAGGGTGCTCTCCTTCTGGATGTTGTAGTCAGC- 38816 Query 33961 AATTGT-CGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGG 34019 || || ||| | || || | ||||||||||| || || || |||||||| || || Sbjct 38815 AAGCGTGCGCCCATCCTCGAGCTGCTTGCCGGCGAAGATGAGCCGCTGCTGGTCTGGAGG 38756 Query 34020 CACGCTCTCTTTGTCCATAATTTTTTGCTT--AATGGAACTC-ACACTATCAGTAGATTC 34076 | || ||| |||||| || || ||| || | || | | |||| ||| || Sbjct 38755 GATGCCCTCCTTGTCCTGGATCTTGGCCTTGACATTG---TCGATGGTGTCAGAAGACTC 38699 Query 34077 GCATTCGACCGTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCAT 34127 |||| || || || || ||||| || || || |||||||| ||||| Sbjct 38698 CACCTCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTAACAAAGATCTGCAT 38648 >seq12936 Length=140512 Score = 98.7 bits (108), Expect = 8e-16 Identities = 164/234 (70%), Gaps = 6/234 (3%) Strand=Plus/Plus Query 33897 GAAACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATC 33956 |||||| || | || ||||| || ||||| || ||| |||||||| ||||||||||| Sbjct 38410 GAAACCACCACGAAGGCGCAGGACAAGATGGAGGGTGGATTCCTTCTGGATGTTGTAATC 38469 Query 33957 TGCCAATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCAC 34016 |||| ||| |||| || | |||||||||||||| || ||||||||||| ||| Sbjct 38470 CGCCAGGGTACGCCCGTCCTCAAGCTGCTTGCCGGCAAAAATGAGGCGCTGCTGGTCCGG 38529 Query 34017 CGGCACGCTCTCTTTGTCCATAATTTTTTGCTT--AATGGAACTC-ACACTATCAGTAGA 34073 || | || ||| |||||| || || ||| || | || | | | || | ||| Sbjct 38530 GGGAATGCCCTCCTTGTCCTGGATCTTCGCCTTCACATTG---TCGATAGTGTCTGAAGA 38586 Query 34074 TTCGCATTCGACCGTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCAT 34127 ||| || | || || || || ||||| || || ||||| ||||| ||||| Sbjct 38587 CTCGACCTCCAAAGTGATGGTCTTGCCGGTGAGCGTCTTCACGAAGATCTGCAT 38640 >seq15625 Length=123999 Score = 96.9 bits (106), Expect = 3e-15 Identities = 99/127 (78%), Gaps = 2/127 (2%) Strand=Plus/Minus Query 33910 AGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCAAT-TGTCG 33968 || ||||||||||| || ||||| ||||||||| |||||||| || || | ||| | Sbjct 106874 AGGCGCAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGGCGAGCGTGTGG 106815 Query 33969 CTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGCACGCTCTC 34028 | |||| || | ||||||||||| || || ||||||||||| ||| ||| | || ||| Sbjct 106814 C-CGTCCTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCCGGCGGGATGCCCTC 106756 Query 34029 TTTGTCC 34035 ||||||| Sbjct 106755 TTTGTCC 106749 >seq1832 Length=108017 Score = 93.3 bits (102), Expect = 3e-14 Identities = 83/104 (80%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 33910 AGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCAATTGTCGC 33969 || || |||||||| || ||||| ||||||||| |||||||| || |||| ||| Sbjct 487 AGGCGGAGCACCAGGTGCAGCGTCAACTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGC 428 Query 33970 TCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATC 34013 ||||| |||| |||||||| || || ||||||||||||||||| Sbjct 427 TCGTCCTCCAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGATC 384 >seq12418 Length=36051 Score = 91.5 bits (100), Expect = 1e-13 Identities = 106/143 (74%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 ||||| ||||| | ||||| || ||||| ||| ||| ||||||||||||||||| ||| Sbjct 33324 CCTCCCCTCAGTCTGAGCACAAGGTGAAGGGTGGACTCTTTCTGAATGTTGTAATCAGCC 33383 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGC 34020 || || | || || | ||||| |||||||| || || ||||| || |||| || Sbjct 33384 AAGGTGCGGCCATCCTCAAGCTGCTTCCCGGCAAAGATGAGACGCTGTTGGTCCAGTGGA 33443 Query 34021 ACGCTCTCTTTGTCCATAATTTT 34043 | || ||| |||||| ||| || Sbjct 33444 ATGCCCTCCTTGTCCTGAATCTT 33466 >seq11736 Length=148999 Score = 91.5 bits (100), Expect = 1e-13 Identities = 106/143 (74%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 ||||| || || ||||| || |||||||| || ||||||||||||||||| || ||| Sbjct 10230 CCTCCCCTGAGACGCAGGACAAGATGAAGAGTAGATTCCTTCTGAATGTTGTAGTCAGCC 10171 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGC 34020 ||| ||| | || |||| ||||| || ||||| || || | |||||| ||| || Sbjct 10170 AATGTGCGCCCATCCTCCAGCTGCTTCCCAGCAAAGATGAGCCTCTGCTGGTCCGGGGGG 10111 Query 34021 ACGCTCTCTTTGTCCATAATTTT 34043 | || ||| |||||| ||| || Sbjct 10110 ATGCCCTCCTTGTCCTGAATCTT 10088 Score = 89.7 bits (98), Expect = 4e-13 Identities = 82/104 (79%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 33910 AGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCAATTGTCGC 33969 || ||||| || |||||||| ||| |||||||||||||||||||||||||| ||| Sbjct 10449 AGGCGCAGGACAAGATGAAGAGTGGATTCCTTCTGAATGTTGTAATCTGCCAAGGTACGC 10390 Query 33970 TCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATC 34013 |||| |||| ||||| || || || || || | ||||||||| Sbjct 10389 CCGTCCTCCAGCTGCTTACCAGCGAAGATGAGCCTCTGCTGATC 10346 Score = 84.2 bits (92), Expect = 2e-11 Identities = 100/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 33900 ACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGC 33959 ||| || ||||| ||||| || || || || || |||||||||||||||||| || || Sbjct 10003 ACCACCCCTCAGACGCAGGACAAGGTGGAGGGTAGACTCCTTCTGAATGTTGTAGTCAGC 9944 Query 33960 CAATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGG 34019 || || |||| || | ||||||||| ||||| || || | |||||| ||| || Sbjct 9943 CAGGGTGCGGCCGTCCTCTAGTTGCTTGCCAGCAAAGATGAGCCTCTGCTGGTCCGGGGG 9884 Query 34020 CACGCTCTCTTTGTCC 34035 | || ||| |||||| Sbjct 9883 GATGCCCTCCTTGTCC 9868 >seq12004 Length=146743 Score = 87.8 bits (96), Expect = 1e-12 Identities = 150/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 33910 AGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCAATTGTCGC 33969 || || ||||||| || || ||| ||||||||| ||||| ||||| || | | || Sbjct 145616 AGACGGAGCACCAAGTGCAGGGTGGACTCCTTCTGTATGTTATAATCCGCGAGTGTGCGA 145557 Query 33970 TCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGCACGCTCTCT 34029 |||| |||| ||||||||||| || || ||||||||||| ||| ||| | || ||| Sbjct 145556 CCGTCCTCCAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCCGGCGGGATGCCCTCC 145497 Query 34030 TTGTCCATAATTTTTTGCTTAATGGAACTCACACTATCAGTAGATTCGCATTCGACCGTT 34089 ||||| || || ||| | | | |||||| || || || | || Sbjct 145496 TTGTCTTGGATCTTCGCCTTCACATTATCGATTGTATCAGACGACTCCACCTCCAGGGTG 145437 Query 34090 ATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCAT 34127 || || |||||||| | || ||||||||||| ||||| Sbjct 145436 ATGGTCTTTCCGGTCAAGGTCTTCACAAAGATCTGCAT 145399 >seq9492 Length=177167 Score = 86.0 bits (94), Expect = 5e-12 Identities = 100/135 (74%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 || || || |||| ||| |||| |||||| || ||||||||| |||||||| || || Sbjct 137923 CCACCCCTGAGCCTCAGGACCAAATGAAGTGTTGACTCCTTCTGGATGTTGTAGTCAGCT 137982 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGC 34020 ||| || | | || ||||||||||| || ||||| ||||| | ||||| || || Sbjct 137983 AATGTTCTCCCATCTTCCAATTGCTTACCAGCAAAAATCAGCCTTTGCTGGTCTGGGGGA 138042 Query 34021 ACGCTCTCTTTGTCC 34035 | || ||| |||||| Sbjct 138043 ATGCCCTCCTTGTCC 138057 >seq8841 Length=75027 Score = 84.2 bits (92), Expect = 2e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 ||||| | || || |||||||| || ||||| ||||||||| |||||||| || || Sbjct 23433 CCTCCGCGGAGGCGGAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGGCG 23492 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGC 34020 | || |||| || | ||||||||||| || || ||||||||||| ||| ||| Sbjct 23493 AGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCCGGCGGG 23552 Query 34021 ACGCTCTCTTTGTC 34034 | || ||| ||||| Sbjct 23553 ATGCCCTCCTTGTC 23566 >seq9352 Length=67289 Score = 82.4 bits (90), Expect = 6e-11 Identities = 102/137 (74%), Gaps = 2/137 (1%) Strand=Plus/Plus Query 33900 ACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGC 33959 ||| || | ||| || |||||||| ||||| ||| ||||||||| |||||||| || || Sbjct 47150 ACCACCACGCAGGCGGAGCACCAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGC 47209 Query 33960 CAATTGT-CGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCG 34018 || || || | || || | |||||||| || || || ||||||||||| ||| | Sbjct 47210 -AAGGGTACGGCCATCCTCAAGCTGCTTGCCAGCGAAGATGAGGCGCTGCTGGTCCGGGG 47268 Query 34019 GCACGCTCTCTTTGTCC 34035 | | || ||| |||||| Sbjct 47269 GAATGCCCTCCTTGTCC 47285 >seq9070 Length=185903 Score = 82.4 bits (90), Expect = 6e-11 Identities = 151/219 (69%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 33910 AGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCAATTGT-CG 33968 || || ||||| || || || |||| |||||||| |||||||||||| || || || || Sbjct 175711 AGACGGAGCACAAGGTGTAGGGTGCACTCCTTCTTAATGTTGTAATCGGC-AAGGGTGCG 175653 Query 33969 CTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGCACGCTCTC 34028 | | || || | || ||| ||| | || ||||||||||||||| || | || ||| Sbjct 175652 CCCATCCTCAAGCTGACGGCCAGCACAGATAAGGCGCTGCTGATCCCAGGGGATGCCCTC 175593 Query 34029 TTTGTCCATAATTTTTTGCTTAATGGAACTCACACTATCAGTAGATTCGCATTCGACCGT 34088 || | ||| |||| ||| ||| | | | |||| || || |||| || Sbjct 175592 CAAGTTCTGAATCTTTTCCTTGATGCTTTTAATCGTGTCAGAGGACTCCACCTCGAGGGT 175533 Query 34089 TATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCAT 34127 | || || ||||| ||| ||||||||||||||||| Sbjct 175532 CCTGGTCTTACCGGTGAGTACCTTCACAAAGATTTGCAT 175494 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396978023743672