Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dichanthelium_20oligosanthes_20[genbank_20GCA_5F001633215.2_202016- 09-29] 17,436 sequences; 589,166,415 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq13858 138 2e-27 >seq13858 Length=133588 Score = 138 bits (152), Expect = 2e-27 Identities = 302/450 (67%), Gaps = 2/450 (0%) Strand=Plus/Minus Query 243289 TTTGCTGAGCGTCTCGTCGCCTGGGTGTGCGTTGAAGGTATTCTGTTTTCCGGGAGTTTC 243348 || || ||||| |||||||||| | ||||| || || || | || || || ||| Sbjct 60215 TTCGCCGAGCGCCTCGTCGCCTTCGCCTGCGTCGAGGGCATCTTCTTCTCGGGCTCCTTC 60156 Query 243349 TGCGCCATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCTCGGTCTGTCTAACGAG 243408 ||||||||||| ||||| ||| || | ||||| |||||| | || |||||| Sbjct 60155 TGCGCCATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCGGGCCTCACCTTCTCCAACGAG 60096 Query 243409 TTCATCAGTCGCGACGAGGGCCTTCACCAACAGTTCGGTGAGCTTATGTATTCAAAGCTC 243468 ||||| |||||||||||||| ||| | |||| || | || ||| Sbjct 60095 CTCATCTCCCGCGACGAGGGCCTCCACTGCGACTTCGCCTGCCTCCTCTACGACCTCCTC 60036 Query 243469 CAGAACAAGCTACCATTCGAAACG-GTCAAACAAATCATCACAGAAGCAGTTGAAAACGA 243527 | |||||| | | | | || ||| | ||| || | || || || || | ||| Sbjct 60035 CGTGGCAAGCT-CGACGAGGACCGCGTCCGCGAGATCGTCGCCGACGCCGTCGACATCGA 59977 Query 243528 AAAGGAATTCATTTGCGACGCTATTCCATGCCGGCTTATTGGCATGAACTCTGAACTCAT 243587 || ||| | |||||||| | || | ||| | ||||||||| | ||||| Sbjct 59976 GCGCGAGTTCGTCTGCGACGCGCTCCCGGTCGCGCTCGTCGGCATGAACGGCGGGCTCAT 59917 Query 243588 GGGACAGTACATCGAATTCGTAGCCGACCGCATTTTCATCGCGCTTGGTTATGAGAAAGT 243647 | | ||||||||||| ||||| || |||||| | |||| ||||| || | ||| | Sbjct 59916 GAGCCAGTACATCGAGTTCGTTGCTGACCGCCTGCTCATGGCGCTCGGCTGCAAGAGGAT 59857 Query 243648 GTACAACTCCAAGAACCCCTTTGCCTTTATGGAGCTCATTTCGCTTCAAGGGAAAACTAA 243707 ||||||| || ||||| || | || ||||||||||| ||||| || ||||| || || Sbjct 59856 GTACAACGCCGCCAACCCATTCGACTGGATGGAGCTCATCTCGCTGCAGGGGAAGACAAA 59797 Query 243708 CTTCTTCGAAAAGCGTGTCAGTGATTATCA 243737 |||||| || ||||| ||| | || || || Sbjct 59796 CTTCTTTGAGAAGCGCGTCGGGGAGTACCA 59767 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102633617986600