Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dichanthelium_20oligosanthes_20[genbank_20GCA_5F001633215.2_202016- 09-29] 17,436 sequences; 589,166,415 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq13858 150 2e-31 seq8302 116 4e-21 seq277 100 3e-16 seq16195 98.7 1e-15 seq10755 95.1 1e-14 seq9779 84.2 3e-11 >seq13858 Length=133588 Score = 150 bits (166), Expect = 2e-31 Identities = 311/453 (69%), Gaps = 10/453 (2%) Strand=Plus/Plus Query 125758 GTAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCAT 125817 ||| ||||| || |||||||| ||||||||||||||||| | || ||| |||||| Sbjct 59769 GTACTCCCCGACGCGCTTCTCAAAGAAGTTTGTCTTCCCCTGCAGCGAGATGAGCTCCAT 59828 Query 125818 AAAATCAAATGGGTTCTTTGAGTTCCAAATTGT-TGGCACCCCAATCTGTTTGAGGAGAC 125876 | || |||||||| | ||| | || | | ||| || | | |||| || | Sbjct 59829 CCAGTCGAATGGGTTGGCGGCGTTGTACATCCTCTTGCAGCCGAG-CGCCATGAGCAGGC 59887 Query 125877 GATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAG-GTTA 125935 | || | ||| |||| ||||||| ||| | | |||||| |||| ||| | | Sbjct 59888 GGTCAGCAACGAACTCGATGTACTGGCTCATGAGCCCGCCGTTCATGCCGACGAGCGCGA 59947 Query 125936 CATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATTTCCACGGCTTCCCGCACGATGGCG 125995 | ||||||||||| ||| |||| | ||| || || ||||| || ||||| || Sbjct 59948 CC-GGGAGCGCGTCGCAGACGAACTCGCGCTCGATGTCGACGGCGTCGGCGACGATCTCG 60006 Query 125996 TGAATGGTGTCCACCCCAGGTCTATTGCGCA--AAGTCTT-GAAGAGTTCCACGGCAAAC 126052 | | | |||| | | | | || | | ||| | || ||| || ||| || Sbjct 60007 CGGACGCGGTCCTCGTCGAGCTTGCCACGGAGGAGGTCGTAGAGGAGG--CA-GGCGAAG 60063 Query 126053 TCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGCATG 126112 || |||||| |||||||| ||||||||||| || || |||||| || || |||||| Sbjct 60064 TCGCAGTGGAGGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGGCCCGGCATG 60123 Query 126113 AGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATTCCCTCC 126172 || || |||||||| | |||||| || || || || || |||||||||||||| ||||| Sbjct 60124 AGGCCGCGCTTCTTGAGCCAGAAGATGGCGCAGAAGGAGCCCGAGAAGAAGATGCCCTCG 60183 Query 126173 ACACACGCGAACGCAAAGAGACGCTCAGCAAAG 126205 || || ||||| || | ||| ||||| || ||| Sbjct 60184 ACGCAGGCGAAGGCGACGAGGCGCTCGGCGAAG 60216 >seq8302 Length=151315 Score = 116 bits (128), Expect = 4e-21 Identities = 359/547 (66%), Gaps = 10/547 (2%) Strand=Plus/Minus Query 10610 CGGACAGCGCGGATGGCACACTCATTGAGGAGGTTCGCCAAGTCGGCACCAGAGAAGCCC 10669 ||| | ||| ||||||| ||| || | |||||| || | |||||| || ||| || Sbjct 103613 CGGCCGGCGAGGATGGCGGCCTCGTTCATGAGGTTTGCGAGGTCGGCGCCGCTGAACCCG 103554 Query 10670 GTCGTTTGCTTTGCGATGGCGTGTAGCTTCACATCGTCAGCCAACTTCTTGTCTCTGGCG 10729 | ||| || | || | | || ||| ||| ||| ||| |||||||| ||| | Sbjct 103553 GGCGTGCGCATGGCCACGACGCTGAGCGACACGTCGGGGTCCAGCTTCTTGT---TGGAG 103497 Query 10730 -TGGACACCCAAA--ATCTTCTCGCGACCGCGCACACTGGGTAGGGACACGGTGATCTTA 10786 || ||||| | |||| ||| || |||||||| ||| || ||| ||| || Sbjct 103496 CTGTGCACCCTGAGGATCTCCTCCCGGCCGCGCACGTCGGGGAGCCCGACGCTGACCTGG 103437 Query 10787 CGATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTTCGTCGCC 10846 || || ||||| || |||||||| || ||| |||| ||||| || |||||| || || Sbjct 103436 CGGTCGAAGCGGCCCGGGCGGAGCAGCGCGGCGTCGAGGATCTCCGGGCGGTTGGTGGCG 103377 Query 10847 GCGATGACAACGATGCCCGTCTCGTTATCAAAGCCATCCATCTCAGTCAAGAGTTGATTG 10906 |||||||| | || ||| | ||| || || |||||||| |||| || || || Sbjct 103376 GCGATGACGATGACGCCGCTGTCGCCGCTGAACCCGTCCATCTCCGTCAGCAGCTGGTTC 103317 Query 10907 ATGGTTTGTTCGCGTTCATCATT-CGCGGGCATACCACCCGCACTGCGTTGCTTACCGAC 10965 | || || || | || || || | | || | |||| | ||| || ||||| Sbjct 103316 AGCGTCTGCTCCCTCTCGTCGTTGCCCCCGCCGATG-CCCGTGCCGCGCTGGCGGCCGAC 103258 Query 10966 GGCGTCAATTTCATCGATGAAAACGATACACGGTTGATTTTCACGGGCAACTTCAAAGAT 11025 |||||| || || |||||||| |||| ||||| || | ||| | |||| Sbjct 103257 GGCGTCGATCTCGTCGATGAAGACGAGGCACGGCGCGTTGGCCTTGGCCTTGTTGAAGAG 103198 Query 11026 ATCTCGGACTCTCTTGGCACCGACACCCACAAACATTTCCACAAAATTGGCGGCGGAACA 11085 || || || | | || || || || || ||||| || | || | || | | ||| Sbjct 103197 GTCACGCACCCGCGACGCGCCCACGCCGACGAACATCTCGATGAACTCGGACCCCG-ACA 103139 Query 11086 TTG-GATGAAGGGGACGTTGGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTCCCCG 11144 | || |||||| ||| || || ||||||||||| || || || |||||||||| Sbjct 103138 GCGAGAAGAAGGGCACGCCGGCCTCCCCCGCGATGGCCTTCGCCAGCAGCGTCTTCCCCG 103079 Query 11145 TCCCAGG 11151 |||| || Sbjct 103078 TCCCCGG 103072 >seq277 Length=113603 Score = 100 bits (110), Expect = 3e-16 Identities = 267/406 (66%), Gaps = 4/406 (1%) Strand=Plus/Minus Query 10787 CGATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTTCGTCGCC 10846 ||||| || | ||||| || || || || ||| || | |||| | ||| || || Sbjct 22597 CGATCGAACCTCCCTGGACGCAGAAGAGCCGAGTCCAGCACATCAGGCCTGTTGGTAGCG 22538 Query 10847 GCGATGACAACGATGCCCGTCTCGTTATCAAAGCCATCCATCTCAGTCAAGAGTTGATTG 10906 |||| |||| || || | | | | | ||||||||||||||||||||||| || || Sbjct 22537 GCGAGCACAATGACACCACTGTTGCCAGCGAAGCCATCCATCTCAGTCAAGAGCTGGTTA 22478 Query 10907 ATGGTTTGTTCGCGTTCATCATTCGCGGGCATACCA--CCCGCACTGCGTTGCTTACCGA 10964 || || || || | ||||| || | || | | || |||| || ||| | |||| Sbjct 22477 ATAGTCTGCTCCCTCTCATCGTTACC--GCCACCGAGTCCGGCACCACGCTGCCTCCCGA 22420 Query 10965 CGGCGTCAATTTCATCGATGAAAACGATACACGGTTGATTTTCACGGGCAACTTCAAAGA 11024 | || ||||| ||||| ||||| || || || || || | ||| || |||| Sbjct 22419 CAGCATCAATCTCATCAATGAAGACAATGCAGGGCGCCTTGGCCTTGGCCTTCTCGAAGA 22360 Query 11025 TATCTCGGACTCTCTTGGCACCGACACCCACAAACATTTCCACAAAATTGGCGGCGGAAC 11084 || || || || |||||||||||| || || | || || || | || || | | Sbjct 22359 GGTCGCGCACCCTGGAGGCACCGACACCGACGAAGAGCTCGACGAACTCGGACGCAGCGC 22300 Query 11085 ATTGGATGAAGGGGACGTTGGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTCCCCG 11144 | || ||| || || || || || |||| ||| || ||||| ||||| || || | Sbjct 22299 AGGAGAAGAATGGCACCCCGGCCTCCCCGGCGACGGCACGCGCGAGCAGGGTTTTGCCTG 22240 Query 11145 TCCCAGGTTTCCCTGCGAGAAGGGCACCACGTGGGATCCTGGCACC 11190 ||||||| || |||| || ||| |||||| ||||||| Sbjct 22239 TCCCAGGCGGGCCGACGAGGAGACAACCCTTGGGGATCTTGGCACC 22194 >seq16195 Length=15917 Score = 98.7 bits (108), Expect = 1e-15 Identities = 92/117 (79%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 126058 GTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGCATGAGACC 126117 ||| || |||||||| ||||||||||| || || |||||| || || |||||||| || Sbjct 229 GTGCAGGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGGCCCGGCATGAGGCC 170 Query 126118 CCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATTCCCTCCAC 126174 |||||||| | ||| || || || || || || ||| |||||||||| ||||| || Sbjct 169 ACGCTTCTTGAGCCAAAAGATGGCGCAGAAGGAGCCCAAGAAGAAGATGCCCTCTAC 113 >seq10755 Length=49669 Score = 95.1 bits (104), Expect = 1e-14 Identities = 91/117 (78%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 126058 GTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGCATGAGACC 126117 ||| || ||||| || ||||||||||| || | |||||| || || ||||||| | Sbjct 35864 GTGTAGGCCCTCATCGCGGGAGATGAGCTCGATGGAGAAGGTGAGGCCCAGCATGAGGCT 35805 Query 126118 CCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATTCCCTCCAC 126174 |||||||| | |||||| || || ||||| || |||||||||||||| ||||| || Sbjct 35804 GCGCTTCTTGAGCCAGAAGATGGCGCAAAAGGAGCCCGAGAAGAAGATGCCCTCTAC 35748 >seq9779 Length=60839 Score = 84.2 bits (92), Expect = 3e-11 Identities = 139/198 (70%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 10874 TCAAAGCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCGCGTTCATCATTCGCG 10933 ||||| ||||||||||||||||| || || |||| || ||||| | ||||||||| | Sbjct 14167 TCAAAACCATCCATCTCAGTCAACAGCTGGTTGAGAGTCTGTTCCCTTTCATCATTTCCA 14226 Query 10934 GGCATACCACCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCATCGATGAAAACGATA 10993 | ||| | || | |||| | || || || ||||||||||| | || || || Sbjct 14227 CCACCAATACCTGTACCTCTTTGCCTTCCAACAGCATCAATTTCATCAACAAACACTATG 14286 Query 10994 CACGGTTGATT-TTCACGGGCAACTTCAAAGATATCTCGGACTCTCTTGGCACCGACACC 11052 || || ||| | | || | ||| ||| | ||| || |||| ||||| ||||| Sbjct 14287 CAAGGAGCATTCTCCTTGGCCTTCTTGAAA-AGATCACGAACTCGGGAAGCACCAACACC 14345 Query 11053 CACAAACATTTCCACAAA 11070 |||||||| |||||||| Sbjct 14346 AACAAACATCTCCACAAA 14363 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597223406782880