Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dichanthelium_20oligosanthes_20[genbank_20GCA_5F001633215.2_202016- 09-29] 17,436 sequences; 589,166,415 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq8841 91.5 1e-13 seq12070 87.8 2e-12 seq15625 86.0 6e-12 seq11548 86.0 6e-12 seq16592 84.2 2e-11 seq12880 82.4 7e-11 >seq8841 Length=75027 Score = 91.5 bits (100), Expect = 1e-13 Identities = 159/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTG 45173 ||||||||||| | | ||| || |||||||| || ||||| ||||| || || ||| | Sbjct 23433 CCTCCGCGGAGGCGGAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGGCG 23492 Query 45174 ACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGA 45233 | ||| || || | || || || ||| | || | || |||||||||||||| Sbjct 23493 AGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCCGGCGGG 23552 Query 45234 ATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGAC 45292 ||||| || || ||||| || || || | || | || | |||||| || ||||| || Sbjct 23553 ATGCCCTCCTTGTCTTGGATCTTGGCCTTCA-CGTTGTCGATGGTGTCCGAGGACTCCAC 23611 Query 45293 TTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 || || || | || || || || || || || || || || |||||| Sbjct 23612 CTCCAGCGTGATGGTCTTCCCCGTCAGGGTCTTCACGAAGATCTGCATC 23660 >seq12070 Length=146516 Score = 87.8 bits (96), Expect = 2e-12 Identities = 160/232 (69%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 ||||| || | |||||| | ||| || || || || || ||||| ||||| || || || Sbjct 65893 ATTCCACCCCTGAGCCTGAGCACCAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCC 65952 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | ||| ||| |||| || || || ||| | || | || ||||||||||| Sbjct 65953 GCCAGGGTGCGGCCATCCTCCAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCCGGG 66012 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTC 45289 || ||||| || || || || || || || | || | || | ||||| || ||||| Sbjct 66013 GGGATGCCCTCCTTGTCCTGGATCTTCGCCTTCA-CGTTGTCGATCGTGTCCGAGGACTC 66071 Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 ||| || || |||| || |||||||| || || || || || || |||||| Sbjct 66072 GACCTCAAGCGTAATGGTCTTGCCGGTGAGGGTCTTCACGAAGATCTGCATC 66123 >seq15625 Length=123999 Score = 86.0 bits (94), Expect = 6e-12 Identities = 158/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTG 45173 || |||||||| | || ||| || |||||||| || ||||| ||||| || || ||| | Sbjct 106883 CCGCCGCGGAGGCGCAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGGCG 106824 Query 45174 ACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGA 45233 | || | || || | || || || ||| | || | || |||||||||||||| Sbjct 106823 AGCGTGTGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCCGGCGGG 106764 Query 45234 ATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGAC 45292 ||||| ||||| || || || || |||| || | || | ||||||| ||| || Sbjct 106763 ATGCCCTCTTTGTCCTGGATCTTGCCCTTGA-CGTTGTCGATGGTGTCGCTGCTCTCCAC 106705 Query 45293 TTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 || || || | ||| || || || || || || || || || |||||| Sbjct 106704 CTCCAGGGTGATCGTCTTCCCCGTCAGCGTCTTCACGAAGATCTGCATC 106656 >seq11548 Length=265335 Score = 86.0 bits (94), Expect = 6e-12 Identities = 158/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTG 45173 || || ||||| | | ||| || || || || || ||||| ||||| || || ||| | Sbjct 39798 CCACCACGGAGACGGAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCG 39739 Query 45174 ACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGA 45233 | ||| ||| |||| || || || || |||||| || ||||||||||| || Sbjct 39738 AGGGTGCGGCCATCCTCCAGCTGCTTGCCGGCAAATATCAGACGCTGCTGGTCCGGGGGG 39679 Query 45234 ATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGAC 45292 ||||| || || || || ||||| || | || | || | ||||||||| ||| || Sbjct 39678 ATGCCCTCCTTGTCCTGGATTTTGGCCTTCA-CGTTGTCAATGGTGTCGGAGCTCTCAAC 39620 Query 45293 TTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 || ||||| | || ||||| || | || || ||||| || |||||| Sbjct 39619 CTCCAGAGTGATGGTCTTGCCAGTCAAGGTCTTCACAAAGATCTGCATC 39571 >seq16592 Length=119134 Score = 84.2 bits (92), Expect = 2e-11 Identities = 115/158 (73%), Gaps = 2/158 (1%) Strand=Plus/Minus Query 45185 ATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTT 45244 ||| |||| || || || ||| | |||| || ||||||||||| || ||||| || || Sbjct 52657 ATCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGGGGGATGCCCTCCTT 52598 Query 45245 ATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAA 45303 || || || || |||| || | || | |||||| || ||||| || ||||| || | Sbjct 52597 GTCCTGGATCTTGGCCTTGA-CGTTGTCGATGGTGTCCGAGGACTCCACCTCGAGGGTGA 52539 Query 45304 CCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 || |||||||| || || || ||||| || |||||| Sbjct 52538 TGGTCTTGCCGGTGAGGGTCTTAACAAAGATCTGCATC 52501 >seq12880 Length=140709 Score = 82.4 bits (90), Expect = 7e-11 Identities = 157/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTG 45173 || |||||||| | | ||| || || || || || ||||| ||||| || || ||| | Sbjct 18811 CCACCGCGGAGGCGGAGCACCAGGTGGAGTGTGGACTCCTTCTGGATGTTGTAGTCGGCG 18870 Query 45174 ACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGA 45233 | ||| || || | || || || ||| | || | || |||||||||||||| Sbjct 18871 AGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGCCGCTGCTGGTCCGGCGGG 18930 Query 45234 ATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGAC 45292 ||||| || ||||| ||||| || ||| | || | || | |||||| || ||||| || Sbjct 18931 ATGCCCTCCTTATCCTGAATCTTGGCTTTCA-CGTTGTCGATGGTGTCCGAGGACTCCAC 18989 Query 45293 TTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 || | || | || || || || || || || || || || |||||| Sbjct 18990 CTCCAACGTGATGGTCTTTCCCGTCAGGGTCTTCACGAAGATCTGCATC 19038 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451904685902560