Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dichanthelium_20oligosanthes_20[genbank_20GCA_5F001633215.2_202016- 09-29] 17,436 sequences; 589,166,415 total letters Query= NC_013085.1 Length=194454 Score E Sequences producing significant alignments: (Bits) Value seq16913 345 5e-90 seq10113 223 4e-53 seq12982 205 1e-47 seq666 136 5e-27 seq12572 102 1e-16 seq12273 91.5 2e-13 seq8160 89.7 6e-13 >seq16913 Length=117496 Score = 345 bits (382), Expect = 5e-90 Identities = 549/786 (70%), Gaps = 30/786 (4%) Strand=Plus/Plus Query 7766 GAGTTGTTGAACGAAGCGTATTGGAAGATCAGACGACCAAAGTATCCGTGAGCAGCAACG 7825 ||||||||||| | ||| ||||| ||||| | |||||||| || ||||||||||| ||| Sbjct 94453 GAGTTGTTGAAAGTAGCATATTGAAAGATTAATCGACCAAAATAACCGTGAGCAGCCACG 94512 Query 7826 ATGTTGTAGGTCTCTTCTTCTTGACCGAACTTATAACCATAGTTCTGGGACTCAGACTCA 7885 || || | ||||||||||||||||| || || ||||| | || |||||| ||| Sbjct 94513 ATATTACATGTCTCTTCTTCTTGACCAAATTTGTAACCTTCATTAGCAGACTCATTTTCA 94572 Query 7886 GTGGTTTCACGAACCAGAGAAGAGGTTACAAGCGAACCATGCATCGCACTGAACAGAGAA 7945 |||||||| | | || | ||||||| | | ||||||||||| | ||||| |||| Sbjct 94573 GTGGTTTCCCTGATCAAACTAGAGGTTGCCAAGGAACCATGCATAACGCTGAA---AGAA 94629 Query 7946 CCACCAAAGACACCAGCGACGCCCAGCATGTGGAAGGGGTGCATCAGGATGTTGTGCTCT 8005 || || || |||||||| | || | |||||| || | ||||| ||||||||||||||| Sbjct 94630 CCGCCGAATACACCAGCTATACCTAACATGTGAAATGAATGCATAAGGATGTTGTGCTCT 94689 Query 8006 GCTTGGAAGACAAGCATGTAGTTGAACGTACCAGAGATGCCAAGAGGCATAGCGTCAGAG 8065 | ||||| |||| || ||||||| ||||||| || || | ||||| | | || ||| Sbjct 94690 ACCTGGAATACAATTATAAAGTTGAA-ATACCAGATATTCCTAAAGGCACACCATCGGAG 94748 Query 8066 AAAGAACCTTGACCGAAAGGATAGACGAGGAATACAGCAGATGCTGCAGCAACTGGAGCA 8125 ||| |||||||| | || || || | ||| |||||| || || |||| ||||| Sbjct 94749 AAACTCCCTTGACCAATAGAGTAAACCAAGAAAACAGCACTAGCAGCTGCAA-AGGAGCT 94807 Query 8126 GAGTATGCTACACAGATCCAGGGACGCATACCTAGACGGTAAGAAAGTT-CCCACTCACG 8184 || ||||| | | ||||| || ||| |||| |||||| || ||||| |||||||||| Sbjct 94808 GAATATGCAATAGCAATCCAAGGGCGCGTACCCAGACGGAAACTAAGTTCCCCACTCACG 94867 Query 8185 ACCCATGTATGCATAGATACCGATCAGGAAGTGGAAGATAACGAGTTGGAAAGGACCACC 8244 |||||| || | | ||| | | || | | | || || | ||||||||| Sbjct 94868 ACCCATATAACAAGCTACACCAAGTAAAAAATATAGAACAATTAGCTCAGAAGGACCACA 94927 Query 8245 GTTGTAGAGCCACTCATCAAGAGAAGCTGCTTCCCAGATGGGATAGAAGTGGAGACCAAT 8304 || || | ||| ||||||| ||| || | || ||| || || || || || | || || Sbjct 94928 ATTTTATAACCATTCATCAACAGATGCAGTTTTCCAAATTGGGTAAAAATGCAATCCGAT 94987 Query 8305 AGCGTTAGAA------------------GAAGGAACAACAGCACCAGAGATGATGTTGTT 8346 || |||| | ||||| || ||||||||| || || ||||| Sbjct 94988 TGCCACAGAAGTAGGAATAATAGTTTCTGCAGGAATAATAGCACCAGATATAATATTGTT 95047 Query 8347 GCCATACATGAGCGAACCAGCGACGGGTTCACGGATGCCGTCAATGTCCACAGGAGGAGC 8406 | ||| | | |||| || || || ||||| || || ||||| || || |||||||| Sbjct 95048 TCTATAAAGTAAAGAACTAGAAACAGGCTCACGAATACCATCAATATCTACCGGAGGAGC 95107 Query 8407 AGCGACGAAAGCGACGATGAAACAAATAGCAGCAGCG---AGCAGCGTAGGAATCATCAG 8463 ||||| ||| | |||| | | | || | || ||| | | ||| | ||||||| Sbjct 95108 AGCGATGAA---GGCGATAATAAATATGGAAGTTGCGGTTAATAAGGTACGGATCATCAA 95164 Query 8464 GACACCGAACCAACCGACATACAGACGATTGTTGGTGGAGGTTACCCAGTTACAGAATTG 8523 ||||||||||| |||| || ||||| || | |||| |||| |||||| ||||| || Sbjct 95165 AACACCGAACCATCCGATGTAAAGACGGTTTTCGGTGCTAGTTATCCAGTTGCAGAAGTG 95224 Query 8524 TTCCCA 8529 |||| Sbjct 95225 ACCCCA 95230 >seq10113 Length=56568 Score = 223 bits (246), Expect = 4e-53 Identities = 467/689 (68%), Gaps = 9/689 (1%) Strand=Plus/Plus Query 6556 AGACCAGAAACGATTAGCCGTGACCATCGAATAGGTCTCCTCTTCTTGTGTAGGCTCAAA 6615 |||||| || | |||| |||| ||| ||||| || || || |||| || | | | | Sbjct 47849 AGACCAAAAGCTGTTAGTAGTGATCATTGAATAAGTTTCTTCAGCTTGAGTTGCGTTACA 47908 Query 6616 CGCCTTGAAAGTATTTGATTGTTCACCATCTTCAAACAAAGTATTCTCTACAGTAGCACC 6675 || | ||| ||||||| ||| |||||| || | ||| || |||| ||||| || Sbjct 47909 AGCATAGAAGGTATTTGCACCATCATCATCTTTGAATAGAGTGTTTTCTATGGTAGCCCC 47968 Query 6676 GTGAATAGCACAGAGCAATGCTCCACCTAAGATACCTGCTACACCCATCATATGAAACGG 6735 || |||| || |||| ||| | ||||| | || || || |||||||||||||| || Sbjct 47969 ATGGATAGAGCATAGCAGAGCTGCGCCTAATACTCCGGCAACCCCCATCATATGAAATGG 48028 Query 6736 GTTGAGCGTCCAGTTGTGGAAGCCCTGTAGGAAGAGTAAGAAGCGGAATATCGCTGCAAC 6795 ||| | |||||| || | || || || | ||| || | ||| | ||||| || | | Sbjct 48029 GTTTAACGTCCAATTAGGAAATCCTTGGAAGAAAAGGATGAATTGAAATATAACTTCTAT 48088 Query 6796 ACCAAACGACGGCGCAAAGAACCAACTGGACTGTCCGAGAGGATACATGAGAAAGACAGA 6855 ||||| | || |||||||| ||| || ||||| | ||||| | || || ||| | Sbjct 48089 GCCAAAACTCAGCACAAAGAACTAACCAGATTGTCCCATTGGATAAACAAGGAATACAAA 48148 Query 6856 CACAAAGACAGCAATG---GGACCAGAAAACGCGATTGCATTGTAGGGACGAATACCGAC 6912 |||| | | ||||| |||| ||| || | |||||||| || || || | | || Sbjct 48149 AACAA--AAAACAATGGTTGGACTAGAGAATGAAATTGCATTATAAGGCCGCA-ATTGAA 48205 Query 6913 TAGAC-GTGCGATCTCAAACTGCCGAAGCATGAAACCTATAAGGGCAAAGGCTCCGTGGA 6971 |||| | || ||||| || || | |||||||||||| || ||| || || |||| Sbjct 48206 CAGACTGAGCATGTTCAAATTGACGTAACATGAAACCTATTAGCATAAAAGCCCCATGGA 48265 Query 6972 GCGCCACAAAAGGCCATAGTCCCCCAAGTTGGAGCCAGCGGACGAAATCTCCCTGAGCTT 7031 | || ||||||| ||| || || || | ||| || || ||||| ||||| ||| Sbjct 48266 GAGCGACAAAAGTCCACAGACCACCTAATTGACATCAACGAGTAAAATCCCCCTGTTCTT 48325 Query 7032 CTGGACCCCATAGAAGAAGTAGGGAATGTCCGAGAGCGTCAGCAGGAGTTGAT-ACAGCA 7090 | | |||||||| || | | || ||| | | | | |||||||| |||| || || Sbjct 48326 CCAGGCCCCATAGTAGTAACAAAGAGTGTGCTAAACTATTAGCAGGAG-TGATAACCGCC 48384 Query 7091 GCAGTAAGGAAATTACATCCCTCAAGATACGAAGAAGCAATCCCGTGAGTGTACCAGCTC 7150 || || | |||||| ||||| || | ||| ||| | | | || || || ||||| Sbjct 48385 GCTGTTAAGAAATTGCATCCTTCCAAATAGGAACTATCCAATCCATGGGTATACCAAGAA 48444 Query 7151 GTGACGAAAGTTGTGCCCGTGAGCCAACCGCCCAGTGCCAGGTAAGCAGTAGGGAACAGA 7210 || || ||||| || || || | |||||| || | || | |||||| ||| || || Sbjct 48445 GTTACAAAAGTAGTYCCTGTAAACCAACCCCCTAAAGCAAAATAAGCACAAGGAAAGAGC 48504 Query 7211 AGAAGACCTGACCAACCAACAAAAACGAA 7239 | || || ||||| | |||||||| || Sbjct 48505 AATAGGCCAGACCATCATACAAAAACAAA 48533 Score = 132 bits (146), Expect = 6e-26 Identities = 209/297 (70%), Gaps = 3/297 (1%) Strand=Plus/Plus Query 6265 AGCGTTGCCTCTTGGCAATACTTCTTCAGGAAATACAAAGTTTTCATGTGGTTGATCCAC 6324 |||| | || | ||| | || || ||||| |||| || |||||||| || |||||| Sbjct 716 AGCGATTCCACATGGTAGAACCTCCTCAGGGAATATAAGATTTTCATGAGGCTGATCCTG 775 Query 6325 TGGTGCCATCCAGGCACGTAGACCTTCATTCAATAGGATGTTCTTGGTATAGAACGTCTC 6384 | ||||||||| ||| | | ||| ||||| || || || | ||||| ||||| ||||| Sbjct 776 AGCTGCCATCCACGCATGAATACCCTCATTTAAAAGAATATATTTGGTGTAGAAAGTCTC 835 Query 6385 GAACTCTGGATCCTCCGCTGCTCTGATCTCTTGTGAAACAAAGTCATAAGCTCTAAGGTT 6444 || || ||||| || ||||| | ||| | || ||| || ||||| || | ||||| Sbjct 836 AAATTCAGGATCTTCTGCTGCACGGATTTTCTGGGAAGAAA--TCATAGGCACATAGGTT 893 Query 6445 AAGTGCAAGACCAATAATACCAATGCTAGAGGTCCAAAGACCCATAACAGGAACAAACAG 6504 || || || ||| | ||||| || || | | || || ||| | |||| || Sbjct 894 CAGAGCCAGGGCAACTAG-CCAATAGCAGTCATCTATAAACTGATTACAAGTACAAGTAG 952 Query 6505 CATAAAGAAATGTAGCCAACGCTTATTGCTGAAGGCGATACCAAAGATCTGAGACCA 6561 |||||||||||||| |||||| |||||| || | | |||||| || || ||||| Sbjct 953 CATAAAGAAATGTAACCAACGTTTATTGGAAAAAGAAACACCAAATATTTGGGACCA 1009 >seq12982 Length=32303 Score = 205 bits (226), Expect = 1e-47 Identities = 342/492 (70%), Gaps = 2/492 (0%) Strand=Plus/Minus Query 8030 AACGTACCAGAGATGCCAAGAGGCATAGCGTCAGAGAAAGAACCTTGACCGAAAGGATAG 8089 || |||||||| || || | ||||||| | ||||| ||| ||||||| | ||| || Sbjct 963 AAAGTACCAGATATTCCTAAAGGCATACCATCAGAAAAACTTTCTTGACCAATAGGGTAA 904 Query 8090 ACGAGGAATACAGCAGATGCTGCAGCAACTGGAGCAGAGTATGCTACACAGATCCAGGGA 8149 | | ||| | ||||| || | ||||| ||||| || ||||| ||| ||||| | Sbjct 903 ATCAAGAAAATAGCAGTAGCAACTGCAACAGGAGCTGAATATGCAACAACAATCCAAAGG 844 Query 8150 CGCATACCTAGACGGTAAGAAAGTTCCCACTCACGACCCATGTATGCATAGATACCGATC 8209 |||||||| ||| || || ||||||||| |||||| |||| || | | ||| | Sbjct 843 CGCATACCCAGATGGAAACTAAGTTCCCAGTCACGATCCATATAACAAGCTACACCAAGT 784 Query 8210 AGGAAGTGGAAGATAACGAGTTGGAAAGGACCACCGTTGTAGAGCCACTCATCAAGAGAA 8269 | ||| || | | || || | ||||||| || ||||| | ||| ||||||| || Sbjct 783 AAGAAATGTAGAACAATTAGGTCATAAGGACCGCCATTGTATAACCATTCATCAACGGAT 724 Query 8270 GCTGCTTCCCAGATGGGATAGAAGTGGAGACCAATAGCGTTAGAAGAAGGAACAACAGCA 8329 || |||| ||| || || || || || | || || | | ||| ||||| || |||| Sbjct 723 GCAGCTTTCCAAATTGGGTAAAAATGCAATCCGATCGTCACATAAGTAGGAATAATAGCA 664 Query 8330 CCAGAGATGATGTTGTTGCCATACATGAGCGAACCAGCGACGGGTTCACGGATGCCGTCA 8389 |||||||| || |||| ||||| || | ||||||| || || ||||| || || ||| Sbjct 663 CCAGAGATAATACTGTTTCCATAAATTAAAGAACCAGAAACAGGCTCACGAATACCATCA 604 Query 8390 ATGTCCACAGGAGGAGCAGCGACGAAAGCGACGATGA-AACAAATAGCAGCAGCGAGCAG 8448 || || || ||||||||||||| ||| | || || | || | || || | | | Sbjct 603 ATATCTACTGGAGGAGCAGCGATGAAGGTGATAATAAGTACGGA-AGTTGCGGTCAATAA 545 Query 8449 CGTAGGAATCATCAGGACACCGAACCAACCGACATACAGACGATTGTTGGTGGAGGTTAC 8508 ||||| ||||||| ||||| ||||| |||| || ||||| | | |||| |||| Sbjct 544 GGTAGGGATCATCAAAACACCAAACCATCCGATGTAAAGACGGTGTTCGGTGCTAGTTAT 485 Query 8509 CCAGTTACAGAA 8520 | |||| ||||| Sbjct 484 CTAGTTGCAGAA 473 >seq666 Length=229199 Score = 136 bits (150), Expect = 5e-27 Identities = 184/255 (72%), Gaps = 1/255 (0%) Strand=Plus/Plus Query 6362 ATGTTCTTGGTATAGAACGTCTCGAACTCTGGATCCTCCGCTGCTCTGATCTCTTGTGAA 6421 || || |||| |||||| ||||| || || ||||| |||||||| ||| || || ||| Sbjct 152281 ATATTTTTGGCATAGAAAGTCTCAAATTCAGGATCTTCCGCTGCATGGATTTCCTGGGAA 152340 Query 6422 ACAAAGTCATAAGCTCTAAGGTTAAGTGCAAGACCAATAATACCAATGCTAGAGGTCCAA 6481 | |||||| |||| | ||||| | || || |||| | ||||| | |||| Sbjct 152341 ATGAAGTCACAAGCACGTAGGTTCAAAGCCAGGCCAACTACGCCAATAGCACTCATCCAT 152400 Query 6482 AGACCCATAACAGGAACAAACAGCATAAAGAAATGTAGCCAACGCTTATTGCTGAAGGCG 6541 | ||| | || || ||||| | |||||||||||||| ||| | |||||| || || Sbjct 152401 AAACCGGTGACGGGTACAAATAACATAAAGAAATGTAACCAGCCTTTATTGAGAAAAGCA 152460 Query 6542 ATACCAAAGATCTGAGACCAGAAACGATTAGCCGTGACCATCGAATAGGTCTCCTCTTCT 6601 | ||||||||| |||||||| || |||| ||| || ||||| ||||| || || || || Sbjct 152461 ACACCAAAGATTTGAGACCAAAAGCGATAAGCAGTAACCATTGAATAAGTTTCTTCAGCT 152520 Query 6602 TGTG-TAGGCTCAAA 6615 || | |||| | ||| Sbjct 152521 TGAGTTAGGTTAAAA 152535 >seq12572 Length=34890 Score = 102 bits (112), Expect = 1e-16 Identities = 186/270 (69%), Gaps = 2/270 (1%) Strand=Plus/Plus Query 6719 CCCATCATATGAAACGGGTTGAGCGTCCAGTTGTGGAAGCCCTGTAGGAAGAGTAAGAAG 6778 |||||||||||||| ||||| | ||||| || || || | ||| || | ||| Sbjct 26693 CCCATCATATGAAATGGGTTTAATGTCCAATTATGAAAAAAAAAGAAGAAAAGGATGAAT 26752 Query 6779 CGGAATATCGCTGCAACACCAAACGACGGCGCAAAGAACCAACTGGACTGTCCGAGAGGA 6838 || ||||| ||||| || ||||| | |||||||||||| || ||||| || ||| Sbjct 26753 CGAAATATAGCTGCTACGCCAAAAAAAAAAACAAAGAACCAACCAGATTGTCCCAGTGGA 26812 Query 6839 TACATGAGAAAGACAGACACAAAGACAGCAATGGGACCAGAAAACGCGATTGCATTGTAG 6898 || || || || | | | ||||| ||||| | |||||||| || | |||||||| | Sbjct 26813 TAAATAAGGAAAAAAAAAACAAAAACAGCGAACGGACCAGAGAATGAAATTGCATT-AAA 26871 Query 6899 GGACGAATACCGACTAGA-CGTGCGATCTCAAACTGCCGAAGCATGAAACCTATAAGGGC 6957 | | | || ||| || || | ||||| || || | ||| ||| || || || Sbjct 26872 AAAAAACAATTGAACAGACCGAGCAAGTTCAAATTGACGTAACATAAAAAAAATTAGTGC 26931 Query 6958 AAAGGCTCCGTGGAGCGCCACAAAAGGCCA 6987 ||| || || ||||| || ||||||| ||| Sbjct 26932 AAAAGCCCCATGGAGAGCGACAAAAGTCCA 26961 >seq12273 Length=37008 Score = 91.5 bits (100), Expect = 2e-13 Identities = 77/95 (81%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 7669 GAAACCGTTGAGGTTGAATGCCATGGTGCTAACACCAAGAGCAGTGAACCAGATGCCAAC 7728 |||||| || |||||||||||||| || |||| ||| | ||||||||||||||| || || Sbjct 29442 GAAACCATTTAGGTTGAATGCCATAGTACTAATACCTAAAGCAGTGAACCAGATCCCTAC 29501 Query 7729 AACTGGCCATGCTGCGAGGAAGAAGTGCAGCGAAC 7763 || ||||| || || | ||||||||| | |||| Sbjct 29502 TACAGGCCAAGCAGCCAAGAAGAAGTGTAAAGAAC 29536 >seq8160 Length=957 Score = 89.7 bits (98), Expect = 6e-13 Identities = 87/112 (78%), Gaps = 0/112 (0%) Strand=Plus/Minus Query 7752 AGTGCAGCGAACGGGAGTTGTTGAACGAAGCGTATTGGAAGATCAGACGACCAAAGTATC 7811 |||| | ||||| ||||||||||| || ||||||||||| | |||||||| || Sbjct 458 AGTGTAAAGAACGAGAGTTGTTGAAACTAGGATATTGGAAGATTAATCGACCAAAATAAT 399 Query 7812 CGTGAGCAGCAACGATGTTGTAGGTCTCTTCTTCTTGACCGAACTTATAACC 7863 | |||||||| || || || |||||||||||||||| | | || || ||||| Sbjct 398 CATGAGCAGCCACAATATTATAGGTCTCTTCTTCTTAATCAAATTTGTAACC 347 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 621989207899840