Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dichanthelium_20oligosanthes_20[genbank_20GCA_5F001633215.2_202016- 09-29] 17,436 sequences; 589,166,415 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq13858 145 9e-30 seq8302 136 5e-27 seq277 109 7e-19 seq16195 98.7 1e-15 seq10755 95.1 1e-14 seq9779 84.2 3e-11 >seq13858 Length=133588 Score = 145 bits (160), Expect = 9e-30 Identities = 310/453 (68%), Gaps = 10/453 (2%) Strand=Plus/Plus Query 127231 GTAGTCCCCGACCCGCTTCTCGAAGAAGTTTGTCTTCCCATCGAGGCTGATATTCTCCAT 127290 ||| |||||||| |||||||| ||||||||||||||||| | || ||| |||||| Sbjct 59769 GTACTCCCCGACGCGCTTCTCAAAGAAGTTTGTCTTCCCCTGCAGCGAGATGAGCTCCAT 59828 Query 127291 AAAATCAAATGGGTTCTTTGAGTTCCAAATTGT-TGGCACCCCAATCTGTTTGAGGAGAC 127349 | || |||||||| | ||| | || | | ||| || | | |||| || | Sbjct 59829 CCAGTCGAATGGGTTGGCGGCGTTGTACATCCTCTTGCAGCCGAG-CGCCATGAGCAGGC 59887 Query 127350 GATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAG-GTTA 127408 | || | ||| |||| ||||||| ||| | | |||||| |||| ||| | | Sbjct 59888 GGTCAGCAACGAACTCGATGTACTGGCTCATGAGCCCGCCGTTCATGCCGACGAGCGCGA 59947 Query 127409 CATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGTACGATGGCG 127468 | ||||||||||| ||| |||| | ||| ||||| || || || ||||| || Sbjct 59948 CC-GGGAGCGCGTCGCAGACGAACTCGCGCTCGATGTCGACGGCGTCGGCGACGATCTCG 60006 Query 127469 TGAATAGTGTCCACCCCAGGTCTATTGCGTA--AAGTCTT-GAAGAGTTCCACAGCAAAC 127525 | | |||| | | | | || | | ||| | || ||| || || || Sbjct 60007 CGGACGCGGTCCTCGTCGAGCTTGCCACGGAGGAGGTCGTAGAGGAGG--CAG-GCGAAG 60063 Query 127526 TCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATG 127585 || |||||| |||||||| ||||||||||| || || |||||| || || |||||| Sbjct 60064 TCGCAGTGGAGGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGGCCCGGCATG 60123 Query 127586 AGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCC 127645 || || |||||||| | |||||| || || || || ||||| ||||||||||| ||||| Sbjct 60124 AGGCCGCGCTTCTTGAGCCAGAAGATGGCGCAGAAGGAGCCCGAGAAGAAGATGCCCTCG 60183 Query 127646 ACACACGCGAACGCAAATAGACGCTCGGCAAAG 127678 || || ||||| || | || |||||||| ||| Sbjct 60184 ACGCAGGCGAAGGCGACGAGGCGCTCGGCGAAG 60216 >seq8302 Length=151315 Score = 136 bits (150), Expect = 5e-27 Identities = 377/568 (66%), Gaps = 10/568 (2%) Strand=Plus/Minus Query 12504 GTGATC--GTCCCGTCGCCGTCGCGGACAGCGCGGATGGCACACTCATTGAGGAGGTTCG 12561 |||||| |||| | |||| |||| | ||| ||||||| ||| || | |||||| | Sbjct 103634 GTGATCCGGTCC--TTGCCGCGGCGGCCGGCGAGGATGGCGGCCTCGTTCATGAGGTTTG 103577 Query 12562 CCAAGTCGGCACCAGAGAAGCCCGTCGTTTGCTTTGCGATGGCGTGTAGCTTCACATCGT 12621 | | |||||| || ||| || | ||| || | || | | || ||| ||| ||| Sbjct 103576 CGAGGTCGGCGCCGCTGAACCCGGGCGTGCGCATGGCCACGACGCTGAGCGACACGTCGG 103517 Query 12622 CAGCCAACTTCTTGTCTCGGGC-GTGGACACCCAAAATCTTCTCGCGTCCGCGCACACTG 12680 ||| |||||||| | | || ||| || | | |||| ||| || |||||||| | Sbjct 103516 GGTCCAGCTTCTTGT-TGGAGCTGTGCACCCTGAGGATCTCCTCCCGGCCGCGCACGTCG 103458 Query 12681 GGTAGGGACACGGTGATCTTACGATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGG 12740 || || ||| ||| || || || ||||| || |||||||| || ||| |||| ||| Sbjct 103457 GGGAGCCCGACGCTGACCTGGCGGTCGAAGCGGCCCGGGCGGAGCAGCGCGGCGTCGAGG 103398 Query 12741 ATATCAATGCGGTTCGTCGCCGCGATGACAACGATGCCCGTCTCGTTATCGAAGCCATCC 12800 || || |||||| || || |||||||| | || ||| | ||| ||| || ||| Sbjct 103397 ATCTCCGGGCGGTTGGTGGCGGCGATGACGATGACGCCGCTGTCGCCGCTGAACCCGTCC 103338 Query 12801 ATCTCAGTCAAGAGTTGATTGATGGTTTGTTCACGTTCATCATT-CGCGGGCATACCACC 12859 ||||| |||| || || || | || || || | || || || | | || | || Sbjct 103337 ATCTCCGTCAGCAGCTGGTTCAGCGTCTGCTCCCTCTCGTCGTTGCCCCCGCCGATG-CC 103279 Query 12860 CGCACTGCGTTGCTTACCGACGGCGTCAATTTCGTCAATGAAAACGATACACGGTTGATT 12919 || | ||| || ||||||||||| || ||||| ||||| |||| ||||| || Sbjct 103278 CGTGCCGCGCTGGCGGCCGACGGCGTCGATCTCGTCGATGAAGACGAGGCACGGCGCGTT 103219 Query 12920 TTCACGGGCAACTTCAAAGATATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTC 12979 | ||| | |||| || ||||| | | || || || || || |||||||| Sbjct 103218 GGCCTTGGCCTTGTTGAAGAGGTCACGCACCCGCGACGCGCCCACGCCGACGAACATCTC 103159 Query 12980 CACAAAATTGGCGGCGGAACATTG-GATGAAGGGGACGTTGGATTCACCCGCGATGGCTC 13038 | || | || | || || | || |||||| ||| || || ||||||||||| Sbjct 103158 GATGAACTCGGACCCCGA-CAGCGAGAAGAAGGGCACGCCGGCCTCCCCCGCGATGGCCT 103100 Query 13039 GGGCGAGGAGGGTCTTCCCCGTCCCTGG 13066 || || || |||||||||||||| || Sbjct 103099 TCGCCAGCAGCGTCTTCCCCGTCCCCGG 103072 >seq277 Length=113603 Score = 109 bits (120), Expect = 7e-19 Identities = 269/406 (66%), Gaps = 4/406 (1%) Strand=Plus/Minus Query 12702 CGATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTTCGTCGCC 12761 ||||| || | ||||| || || || || ||| || | |||| | ||| || || Sbjct 22597 CGATCGAACCTCCCTGGACGCAGAAGAGCCGAGTCCAGCACATCAGGCCTGTTGGTAGCG 22538 Query 12762 GCGATGACAACGATGCCCGTCTCGTTATCGAAGCCATCCATCTCAGTCAAGAGTTGATTG 12821 |||| |||| || || | | | | ||||||||||||||||||||||||| || || Sbjct 22537 GCGAGCACAATGACACCACTGTTGCCAGCGAAGCCATCCATCTCAGTCAAGAGCTGGTTA 22478 Query 12822 ATGGTTTGTTCACGTTCATCATTCGCGGGCATACCA--CCCGCACTGCGTTGCTTACCGA 12879 || || || || | ||||| || | || | | || |||| || ||| | |||| Sbjct 22477 ATAGTCTGCTCCCTCTCATCGTTACC--GCCACCGAGTCCGGCACCACGCTGCCTCCCGA 22420 Query 12880 CGGCGTCAATTTCGTCAATGAAAACGATACACGGTTGATTTTCACGGGCAACTTCAAAGA 12939 | || ||||| || |||||||| || || || || || | ||| || |||| Sbjct 22419 CAGCATCAATCTCATCAATGAAGACAATGCAGGGCGCCTTGGCCTTGGCCTTCTCGAAGA 22360 Query 12940 TATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAAATTGGCGGCGGAAC 12999 || ||||| || |||||||||||| || || | ||| || || | || || | | Sbjct 22359 GGTCGCGCACCCTGGAGGCACCGACACCGACGAAGAGCTCGACGAACTCGGACGCAGCGC 22300 Query 13000 ATTGGATGAAGGGGACGTTGGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTCCCCG 13059 | || ||| || || || || || |||| ||| || ||||| ||||| || || | Sbjct 22299 AGGAGAAGAATGGCACCCCGGCCTCCCCGGCGACGGCACGCGCGAGCAGGGTTTTGCCTG 22240 Query 13060 TCCCTGGTTTCCCCGCGAGAAGGGCACCACGTGGGATCCTGGCACC 13105 |||| || || |||| || ||| |||||| ||||||| Sbjct 22239 TCCCAGGCGGGCCGACGAGGAGACAACCCTTGGGGATCTTGGCACC 22194 >seq16195 Length=15917 Score = 98.7 bits (108), Expect = 1e-15 Identities = 92/117 (79%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 127531 GTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACC 127590 ||| || |||||||| ||||||||||| || || |||||| || || |||||||| || Sbjct 229 GTGCAGGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGGCCCGGCATGAGGCC 170 Query 127591 CCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCAC 127647 |||||||| | ||| || || || || || ||||| |||||||||| ||||| || Sbjct 169 ACGCTTCTTGAGCCAAAAGATGGCGCAGAAGGAGCCCAAGAAGAAGATGCCCTCTAC 113 >seq10755 Length=49669 Score = 95.1 bits (104), Expect = 1e-14 Identities = 91/117 (78%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 127531 GTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACC 127590 ||| || ||||| || ||||||||||| || | |||||| || || ||||||| | Sbjct 35864 GTGTAGGCCCTCATCGCGGGAGATGAGCTCGATGGAGAAGGTGAGGCCCAGCATGAGGCT 35805 Query 127591 CCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCAC 127647 |||||||| | |||||| || || ||||| ||||| ||||||||||| ||||| || Sbjct 35804 GCGCTTCTTGAGCCAGAAGATGGCGCAAAAGGAGCCCGAGAAGAAGATGCCCTCTAC 35748 >seq9779 Length=60839 Score = 84.2 bits (92), Expect = 3e-11 Identities = 139/198 (70%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 12789 TCGAAGCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCACGTTCATCATTCGCG 12848 || || ||||||||||||||||| || || |||| || ||||| | ||||||||| | Sbjct 14167 TCAAAACCATCCATCTCAGTCAACAGCTGGTTGAGAGTCTGTTCCCTTTCATCATTTCCA 14226 Query 12849 GGCATACCACCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCGTCAATGAAAACGATA 12908 | ||| | || | |||| | || || || |||||||| |||| || || || Sbjct 14227 CCACCAATACCTGTACCTCTTTGCCTTCCAACAGCATCAATTTCATCAACAAACACTATG 14286 Query 12909 CACGGTTGATT-TTCACGGGCAACTTCAAAGATATCTCGCACTCTCTTGGCACCGACACC 12967 || || ||| | | || | ||| ||| | ||| || |||| ||||| ||||| Sbjct 14287 CAAGGAGCATTCTCCTTGGCCTTCTTGAAA-AGATCACGAACTCGGGAAGCACCAACACC 14345 Query 12968 CACAAACATCTCCACAAA 12985 ||||||||||||||||| Sbjct 14346 AACAAACATCTCCACAAA 14363 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613373486105760