Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dichanthelium_20oligosanthes_20[genbank_20GCA_5F001633215.2_202016- 09-29] 17,436 sequences; 589,166,415 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq13858 152 8e-32 seq16195 143 4e-29 seq10755 104 4e-17 >seq13858 Length=133588 Score = 152 bits (168), Expect = 8e-32 Identities = 296/431 (69%), Gaps = 7/431 (2%) Strand=Plus/Plus Query 159649 CTTCTCGAAAAAGTTGGTCTTGCCCTCCATGGATATTGATTCCATGAACCCGAATGGGTT 159708 |||||| || ||||| ||||| |||| || || || ||||| | |||||||||| Sbjct 59784 CTTCTCAAAGAAGTTTGTCTTCCCCTGCAGCGAGATGAGCTCCATCCAGTCGAATGGGTT 59843 Query 159709 CTTCACGTGATAGCGCTTCGGAAATCCGAGAGCCGCCAGCAACCTGTCTGCCACAAATTC 159768 ||| || | || | ||||| ||| |||| | ||| || || || || Sbjct 59844 GGCGGCGTTGTACATCCTCTTGCAGCCGAGCGCCATGAGCAGGCGGTCAGCAACGAACTC 59903 Query 159769 GATGTAGCTACACATCTGCTCACAGTTGATCCCCAGCAGCCTAACGGGGAGCGCTTCCGA 159828 |||||| | ||| || | | ||| || || | ||| || |||||||| || | Sbjct 59904 GATGTACTGGCTCATGAGCCCGCCGTTCATGCCGACGAGCGCGACCGGGAGCGCGTCGCA 59963 Query 159829 CAGAAACTCCTTCTCAATCTCGACCGCTTCGGTCACAATCT-GCGAGACACGTTCGTACC 159887 | ||||| ||| || ||||| || |||| || |||| ||| ||| || || | Sbjct 59964 GACGAACTCGCGCTCGATGTCGACGGCGTCGGCGACGATCTCGCG-GACGCGGTCCTCGT 60022 Query 159888 CCGGCTTGCCCAAAATGTGGTCCTTAAACAGGAGGCACGCAAAGTCGCAGTGCAGTCCCT 159947 | ||||||| | | |||| | | |||||||| || ||||||||||| || |||| Sbjct 60023 CGAGCTTGCCACGGAGGAGGTCGT---AGAGGAGGCAGGCGAAGTCGCAGTGGAGGCCCT 60079 Query 159948 CGTCCCGAGAGATGAACTCGTTGGACATGATGAGGCCCGGCATGATCCCACGCGGTTTGA 160007 |||| || ||||||| ||||||||| | | ||||||||||||||| || ||| |||| Sbjct 60080 CGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGGCCCGGCATGAGGCCGCGCTTCTTGA 60139 Query 160008 GCCAAAAAATGGCCGCAAAAGCACCGCTA-AAAAAGATCCCCTCCACGGCCGCAAACGCC 160066 |||| || |||| |||| ||| | | | | || ||||| ||||| ||| || || || Sbjct 60140 GCCAGAAGATGG-CGCAGAAGGAGCCCGAGAAGAAGATGCCCTCGACGCAGGCGAAGGCG 60198 Query 160067 ACGAGCCTCTC 160077 ||||| | ||| Sbjct 60199 ACGAGGCGCTC 60209 >seq16195 Length=15917 Score = 143 bits (158), Expect = 4e-29 Identities = 229/323 (71%), Gaps = 7/323 (2%) Strand=Plus/Minus Query 159734 CCGAGAGCCGCCAGCAACCTGTCTGCCACAAATTCGATGTAGCTACACATCTGCTCACAG 159793 ||||| ||| |||| | |||| | || || |||||||| | ||| | ||| | Sbjct 429 CCGAGCGCCATGAGCAGGCGGTCTACGACGAACTCGATGTACTGGCTCATGAGTCCACCG 370 Query 159794 TTGATCCCCAGCAGCCTAACGGGGAGCGCTTCCGACAGAAACTCCTTCTCAATCTCGACC 159853 || || || | ||| ||||||||||| || | | |||||| ||| | | ||| Sbjct 369 TTCATGCCGACAAGCGCGACGGGGAGCGCGTCGCAGACAAACTCGCGCTCGGTGTTGACG 310 Query 159854 GCTTCGGTCACAATCT-GCGAGACACGTTCGTACCCCGGCTTGCCCAAAATGTGGTCCTT 159912 || |||| || |||| ||| ||| || | | | ||||| || | |||| || Sbjct 309 GCGTCGGCGACGATCTCGCG-GACGCGGGCCTCGTCAACCTTGCTACGAAGGAGGTCRTT 251 Query 159913 AAACAGGAGGCACGCAAAGTCGCAGTGCAGTCCCTCGTCCCGAGAGATGAACTCGTTGGA 159972 | ||||||| || |||||||||||||| |||||||| || ||||||| ||||||||| Sbjct 250 GA---GGAGGCAGGCGAAGTCGCAGTGCAGGCCCTCGTCGCGGGAGATGAGCTCGTTGGA 194 Query 159973 CATGATGAGGCCCGGCATGATCCCACGCGGTTTGAGCCAAAAAATGGCCGCAAAAGCACC 160032 | | ||||||||||||||| |||||| ||||||||||| |||| |||| ||| | | Sbjct 193 GAAGGTGAGGCCCGGCATGAGGCCACGCTTCTTGAGCCAAAAGATGG-CGCAGAAGGAGC 135 Query 160033 GCTA-AAAAAGATCCCCTCCACG 160054 | | || ||||| ||||| ||| Sbjct 134 CCAAGAAGAAGATGCCCTCTACG 112 >seq10755 Length=49669 Score = 104 bits (114), Expect = 4e-17 Identities = 108/139 (78%), Gaps = 2/139 (1%) Strand=Plus/Minus Query 159917 AGGAGGCACGCAAAGTCGCAGTGCAGTCCCTCGTCCCGAGAGATGAACTCGTTGGACATG 159976 |||||||| || ||||||||||| || ||||| || || ||||||| |||| |||| | | Sbjct 35884 AGGAGGCAGGCGAAGTCGCAGTGTAGGCCCTCATCGCGGGAGATGAGCTCGATGGAGAAG 35825 Query 159977 ATGAGGCCCGGCATGATCCCACGCGGTTTGAGCCAAAAAATGGCCGCAAAAGCACCGCTA 160036 |||||||| |||||| | ||| |||||||| || |||| |||||||| | | | | Sbjct 35824 GTGAGGCCCAGCATGAGGCTGCGCTTCTTGAGCCAGAAGATGG-CGCAAAAGGAGCCCGA 35766 Query 160037 -AAAAAGATCCCCTCCACG 160054 || ||||| ||||| ||| Sbjct 35765 GAAGAAGATGCCCTCTACG 35747 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 794981895924160