Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dichanthelium_20oligosanthes_20[genbank_20GCA_5F001633215.2_202016- 09-29] 17,436 sequences; 589,166,415 total letters Query= NC_014637.1 Length=617453 Score E Sequences producing significant alignments: (Bits) Value seq1299 143 1e-28 seq11297 111 6e-19 seq9353 105 3e-17 seq12418 100 1e-15 seq12074 100 1e-15 seq12936 93.3 2e-13 seq4406 93.3 2e-13 seq11736 87.8 7e-12 >seq1299 Length=109948 Score = 143 bits (158), Expect = 1e-28 Identities = 586/912 (64%), Gaps = 45/912 (5%) Strand=Plus/Minus Query 451247 GAAGAAATTTCATCTATGGTTCTTACTAAAATGAAAGAAACAGCAGAACAATATATTGGT 451306 ||||||||||| || |||||||||| || ||| || | || ||| || |||| Sbjct 46493 GAAGAAATTTCTTCCATGGTTCTTATCAAGATGCGTGAGATTGCTGAAGCTTACCTTGGA 46434 Query 451307 TCTCCAGTTACTGATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAA 451366 || | ||| |||| || | || ||||| ||||| ||||||||| | || |||| Sbjct 46433 TCAACCATTAAGAATGCTGTGGTCACCGTTCCTGCTTACTTCAATGATTCCCAGAGGCAG 46374 Query 451367 GCAACTAAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCT 451426 |||||||| ||||| || |||||||||| | ||||| | || ||||| ||||| || Sbjct 46373 GCAACTAAGGATGCTGGTGTTATTGCTGGTCTCAATGTCATGCGTATTATCAATGAGCCA 46314 Query 451427 ACAGCAGCTGCTCTAGCATATGGACTAGGAAAATCAAAAGAAAC------AGAAGaaaaa 451480 || || ||||| | || ||||| || | || |||| || | ||||| Sbjct 46313 ACTGCTGCTGCAATTGCCTATGGTCTTGACAA---GAAAGCTACTAGTGTTGGTGAAAAG 46257 Query 451481 aaTATTTTAGTATTTGATTTTGGTGGAGGAACTCATGATACTTCTGTACTTTCAATTGAA 451540 ||| | | | ||||| ||||||| || ||| |||| ||| | || | || || Sbjct 46256 AATGTCCTTATTTTTGACCTTGGTGGTGGCACTTTTGATGTCTCTCTCCTCACTATCGAG 46197 Query 451541 GATGGGGTATTTGAAGTAAAGGCAACCAATGGTGATACTCATCTAGGAGGTGAAGATATT 451600 || || ||||||| || ||||| || |||||||||||| || || || || || | Sbjct 46196 GAGGGTATATTTGAGGTGAAGGCCACAGCTGGTGATACTCACCTTGGTGGGGAGGACTTC 46137 Query 451601 GATAATGCAATTGTGGAA----TGGTTGAAAACTGATGTTCAACG--AAAACTAAAAGTA 451654 || || | ||| || | || || || || | || ||||| ||||| Sbjct 46136 GACAA-CCGCTTGGTAAACCACTTTGTGCAA---GAGTTTAAGCGGAAAAACAAAAAG-- 46083 Query 451655 GATATTTCTACTAACCAAAAAGCACTTAGACGTCTTAAAACATCAGCAGAAAAAGCTAAA 451714 ||||| || |||| | || | ||| | |||| || ||| || | ||||| Sbjct 46082 GATATCACTGGGAACCCCAGGGCTTTGAGAAGGCTTAGGACTTCATGTGAGAGGGCTAAG 46023 Query 451715 ATTACACTCAGTTCAACA---CAAACTACTAGTATAAACATTGATAGTTTAGTTGATGGA 451771 | ||||| ||| ||| |||||||| || | |||||| | | ||| || Sbjct 46022 AGGACACTTTCTTCCACAGCGCAAACTAC---GATTGAAATTGATTCTCTCTATGAGGGC 45966 Query 451772 ATGGATTATGCTACTACTCTTACCCGTGCTAAATTTG----AATCAATTTGTTCCAGTAT 451827 || |||| | | || | ||| | || | ||||| | | || || || ||| Sbjct 45965 ATTGATTTCTATTCCACCATCACCAGAGCCAGATTTGAGGAACTTAACATGGACC--TAT 45908 Query 451828 TTTTGCACGGGTAATGAAACCTGTTGATCAAGT-ATTACATGATTCTAAAATTAGTAAAG 451886 | | | | ||| | ||||| || |||| | | ||| | || || ||| Sbjct 45907 TCAGGAA--GTGCATGGAGCCTGTGGA-GAAGTGCCTGCGGGATGCCAAGATGGATAAGA 45851 Query 451887 ATAAAATTGATGAAATTGTGCTTGTAGGAGGTTCTACACGAATTCCTAAAATTCAAGATA 451946 | | |||| |||| ||||| || |||||||| |||| || ||| |||| | Sbjct 45850 GCACTGTCCATGATGTTGTCCTTGTTGGTGGTTCTACTAGAATCCCCAAAGTTCAGCAAC 45791 Query 451947 TGTT----GTCTTCTTATTTTGGAGGAAAACAACTATGTAAGAGCGTAAATCCTGATGAA 452002 || | | |||||| | ||||| |||| || |||||| | |||||||||||| Sbjct 45790 TGCTGCAGGACTTCTTCAAT----GGAAAGGAACTTTGCAAGAGCATCAATCCTGATGAA 45735 Query 452003 GCTGTTGCATATGGTGCTGCAGTTCAAGCAGCTATTCTAACAGGTTCAGATGATGAAAAA 452062 |||||||| ||||| ||||| || || || ||||| || | ||| | |||| || Sbjct 45734 GCTGTTGCCTATGGCGCTGCGGTCCAGGCTGCTATCCTTAGTGGTGAGGGCAATGAGAAG 45675 Query 452063 TTAGGAGATATTCTGTTAGTAGATGTAACACCTCTATCTCTTGGAGTTGAAACAGCTGGT 452122 | || |||| | | ||||| || || || |||||||| ||||||| ||||| Sbjct 45674 GTGCAGGACCTTCTCCTCCTTGATGTGACCCCACTGTCTCTTGGTCTTGAAACTGCTGGA 45615 Query 452123 GGAATGATGACT 452134 ||| | |||||| Sbjct 45614 GGAGTCATGACT 45603 >seq11297 Length=44683 Score = 111 bits (122), Expect = 6e-19 Identities = 102/129 (79%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 451322 GCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCA 451381 ||||| ||||||||||| ||||||||||||||||| ||||| || || || || ||||| Sbjct 38401 GCAGTGATTACTGTTCCAGCTTATTTCAATGATGCTCAACGTCAGGCCACGAAGGATGCT 38460 Query 451382 GGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCTA 451441 || | |||||||| | ||||| | || || |||||||| |||||||||||||| Sbjct 38461 GGCCGCATTGCTGGCCTTGATGTTGAGAGGATCATCAATGAACCAACAGCAGCTGCTCTG 38520 Query 451442 GCATATGGA 451450 | |||||| Sbjct 38521 TCTTATGGA 38529 >seq9353 Length=67288 Score = 105 bits (116), Expect = 3e-17 Identities = 100/128 (78%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 451322 GCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCA 451381 ||||| || || ||||| ||||| |||||||| ||||| || |||||| |||||||| Sbjct 46128 GCAGTGATCACAGTTCCTGCTTACTTCAATGACTCACAAAGGACAGCAACAAAAGATGCT 46187 Query 451382 GGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCTA 451441 || | |||||||| | | ||||| || ||||| ||||| |||||||| || | ||| Sbjct 46188 GGCCGAATTGCTGGGCTGGAGGTTCTACGTATTATAAATGAGCCTACAGCGGCATCACTA 46247 Query 451442 GCATATGG 451449 |||||||| Sbjct 46248 GCATATGG 46255 >seq12418 Length=36051 Score = 100 bits (110), Expect = 1e-15 Identities = 141/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 391056 ATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCTGATAAC 391115 |||||||| || || || ||||| || |||||||||||||| || || || ||||| | Sbjct 33770 ATTTTCGTCAAGACCCTCACTGGCAAGACTATTACTCTTGAAGTCGAGTCCTCTGACACT 33711 Query 391116 ATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAACAACGT 391175 || || | | || || ||| | || |||||||| || ||||| || || || || Sbjct 33710 ATCGATAATGTAAAGGCGAAGATTTAGGACAAGGAAGGTATCCCTCCGGACCAGCAGCGG 33651 Query 391176 TTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAATATTGAT 391235 || || ||| | || || || ||||| ||||| | || ||||| || || || ||| | Sbjct 33650 TTGATCTTCGCTGGCAAGCAGCTTGAGGATGGCCGTACCTTGGCTGACTACAACATTCAG 33591 Query 391236 AAGGATGCAACACTTCAC 391253 ||||| | || || ||| Sbjct 33590 AAGGAGTCCACCCTCCAC 33573 >seq12074 Length=29546 Score = 100 bits (110), Expect = 1e-15 Identities = 130/180 (72%), Gaps = 0/180 (0%) Strand=Plus/Plus Query 451271 ACTAAAATGAAAGAAACAGCAGAACAATATATTGGTTCTCCAGTTACTGATGCAGTAATT 451330 || || ||||| || ||||||||| || |||| | || | | || || || Sbjct 18536 ACCAAGATGAAGGAGACAGCAGAATCTTACCTTGGAAAATCTGTCTCGAAAGCGGTGATC 18595 Query 451331 ACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCAGGACATATT 451390 |||||||| || || ||||||||||| ||||| || || || || |||||||| | ||| Sbjct 18596 ACTGTTCCAGCATACTTCAATGATGCTCAACGTCAGGCCACAAAGGATGCAGGCCGCATT 18655 Query 451391 GCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCTAGCATATGGA 451450 ||||| | ||||| | || || |||||||| |||||||||||||| | |||||| Sbjct 18656 GCTGGCCTTGATGTTGAAAGGATCATCAATGAACCAACAGCAGCTGCTCTGTCCTATGGA 18715 >seq12936 Length=140512 Score = 93.3 bits (102), Expect = 2e-13 Identities = 135/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | || || || || || || ||||| || ||||| || ||||| || || || ||| Sbjct 39096 ATGCAGATCTTTGTGAAGACCCTCACTGGCAAGACTATCACCCTTGAGGTGGAGTCTTCT 39037 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 || | ||||| | | || ||| ||||| || ||||||||||||||||| || || Sbjct 39036 GACACGATTGACAATGTCAAGGCAAAGATTCAGGACAAGGAAGGAATTCCTCCAGACCAG 38977 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 ||||| | || ||| | || || || || || || || | || | || ||||| || Sbjct 38976 CAACGCCTTATCTTCGCTGGCAAGCAGCTCGAGGACGGGCGTACGCTTGCAGATTACAAC 38917 Query 391230 ATTGATAAGGA 391240 ||| | ||||| Sbjct 38916 ATTCAAAAGGA 38906 >seq4406 Length=98560 Score = 93.3 bits (102), Expect = 2e-13 Identities = 102/136 (75%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 451314 TTACTGATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTA 451373 |||| | ||||| |||| || || || || ||||| ||| ||||| || |||||| | Sbjct 39187 TTACAAAAGCAGTGGTTACAGTCCCAGCATACTTCAACGATTCACAAAGGACAGCAACCA 39246 Query 451374 AAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAG 451433 ||||||| || | |||||| || | | |||||||| |||||||||||||| || || | Sbjct 39247 AAGATGCTGGCCGTATTGCAGGGCTGGAAGTTCTTCGTATTATTAATGAACCAACTGCTG 39306 Query 451434 CTGCTCTAGCATATGG 451449 | | || || ||||| Sbjct 39307 CATCACTGGCCTATGG 39322 >seq11736 Length=148999 Score = 87.8 bits (96), Expect = 7e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | || || || || ||||||||||| || || || || || || || ||| ||| Sbjct 10232 ATGCAGATCTTTGTCAAGACACTGACTGGCAAGACCATCACCCTGGAAGTGGAAAGCTCT 10291 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 || | |||||| | | || || || || || ||||| || |||||||||||||| Sbjct 10292 GACACCATTGATAATGTGAAGGCCAAGATCCAGGACAAGGAGGGGATTCCTCCTGATCAG 10351 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 || | | || ||| | || || || || || || || | || ||||| ||||| || Sbjct 10352 CAGAGGCTCATCTTCGCTGGTAAGCAGCTGGAGGACGGGCGTACCTTGGCAGATTACAAC 10411 Query 391230 ATTGATAAGGATGCAACACTTCA 391252 ||| | ||||| | || ||||| Sbjct 10412 ATTCAGAAGGAATCCACTCTTCA 10434 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1975277026979088