Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dichanthelium_20oligosanthes_20[genbank_20GCA_5F001633215.2_202016- 09-29] 17,436 sequences; 589,166,415 total letters Query= NC_014649.1 Length=1181549 Score E Sequences producing significant alignments: (Bits) Value seq1299 242 3e-58 seq11181 105 5e-17 seq4406 98.7 8e-15 seq14304 96.9 3e-14 seq11297 96.9 3e-14 seq12074 91.5 1e-12 seq9702 91.5 1e-12 >seq1299 Length=109948 Score = 242 bits (268), Expect = 3e-58 Identities = 696/1060 (66%), Gaps = 18/1060 (2%) Strand=Plus/Plus Query 517259 GCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACC 517318 |||| || || ||||||||||||||||| | ||||| || || |||||||| Sbjct 45367 GCAGAGACGTTCAGAATACCATTGGCATCAATGTCAAAGCATACAGTGATCTGAGGGACA 45426 Query 517319 CCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTA 517378 || || ||||||| ||||| || | | |||| | || || ||| || || | Sbjct 45427 CCCCTAGGAGCAGGGGGGATTCCAGAGAGCTCAAATTTCCCAAGGAGATTGTTGTCCCTG 45486 Query 517379 GTGAATTTTCGTTCACCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAATAA 517438 || | | || ||||| ||| ||||| || ||| || ||||| || || Sbjct 45487 GTCCGGGTCCTCTCGCCCTCATAAACCTGGATCAACACACCAGGCTGGTTATCAGAGTAG 45546 Query 517439 GTTGTAAATACTCTGGATTTT-TTACAAGGAATTGTTGTGTTTCTATCAATAATATTGGT 517497 || | || || ||| || || ||||| || ||||| || ||||| || Sbjct 45547 GTGGAGAAGAC-CTGCTCCTTCTTGGTTGGAATGGTGGTGTTCCTTGGAATAAGGACAGT 45605 Query 517498 CATAATACCACCTGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAAT 517557 ||| | || || || ||||| | ||||||||| || || || ||||||| |||| || Sbjct 45606 CATGACTCCTCCAGCAGTTTCAAGACCAAGAGACAGTGGGGTCACATCAAGGAGGAGAAG 45665 Query 517558 ATTTTGAAGTTTTTCATCAGTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCACCATA 517617 | || | || |||| | |||| ||| ||||| || || | ||||| ||||| Sbjct 45666 GTCCTGCACCTTCTCATTGCCCTCACCACTAAGGATAGCAGCCTGGACCGCAGCGCCATA 45725 Query 517618 TGCAACAGCTTCATCAGGATTAA--CAGTTTCATTTAGTTTTTTACCATTGAAAAAATTT 517675 |||||||||||||||||||| | | || || |||| || |||||||| || | Sbjct 45726 GGCAACAGCTTCATCAGGATTGATGCTCTTGCAA--AGTTCCTTTCCATTGAAGAAGTCC 45783 Query 517676 GAAAGAAGTTGTCTTACCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCATGC 517735 || ||||| || || || || | || || || ||||| | |||| ||||| Sbjct 45784 TGCAGCAGTTGCTGAACTTTGGGGATTCTAGTAGAACCACCAACAAGGACAACATCATGG 45843 Query 517736 ACCTGTGAT-TTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAGACCCGC 517794 || ||| | ||||||| || | |||| | || || || || || | | | Sbjct 45844 ACA-GTGCTCTTATCCATCTTGGCATCCCGCAGGCACTTCTCCACAGGCTCCATGCACTT 45902 Query 517795 TCTAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACATTATAATC 517854 || || | ||| |||||| || ||| | ||||| || | ||| || |||| Sbjct 45903 CCTGAATAGGTCCATGTTAAGTTCCTCAAATCTGGCTCTGGTGATGGTGGAATAGAAATC 45962 Query 517855 AATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAGTGCACG 517914 ||| || || | | |||||||| ||||||||||||||| | | ||||| |||| | Sbjct 45963 AATGCCCTCATAGAGAGAATCAATTTCAATCGTAGTTTGCGCTGTGGAAGAAAGTGTCCT 46022 Query 517915 TTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAGGCTTTTGCTGATTG--ATTCAAA 517972 ||||| | ||||||| ||||| || |||| || || | | | || | | | | Sbjct 46023 CTTAGCCCTCTCACATGAAGTCCTAAGCCTTCTCAAAGCCCTGG--GGTTCCCAGTGATA 46080 Query 517973 TCTGTTTTATATTTTCTCTTGAAATCTTCAACACACCATGTTACAAGACGATTATCAAAA 518032 || |||| | ||| | ||| || |||| ||| | |||| | || || || || Sbjct 46081 TCCTTTTTGTTTTTCCGCTTAAACTCTTGCACAAAGTGGTTTACCAAGCGGTTGTCGAAG 46140 Query 518033 TCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATCTTCA 518092 || || || || | | ||||| || | || || | || | || | || || || Sbjct 46141 TCCTCCCCACCAAGGTGAGTATCACCAGCTGTGGCCTTCACCTCAAATATACCCTCCTCG 46200 Query 518093 AGAGACAAAAGAGTTACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATT 518152 | || | |||| |||||| || |||||||| | ||||||||||| |||||| || Sbjct 46201 ATAGTGAGGAGAGAGACATCAAAAGTGCCACCACCAAGGTCAAAAATAAGGACATTCTTT 46260 Query 518153 TCTTTGTC-----TTGGTTT-TTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCA 518206 || | | | ||| || ||||||||||| |||| |||||||||||||| ||| Sbjct 46261 TCACCAACACTAGTAGCTTTCTTGTCAAGACCATAGGCAATTGCAGCAGCAGTTGGCTCA 46320 Query 518207 TTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTT 518266 || ||||| | || ||||| ||||||||||| || ||||| ||||| || || || Sbjct 46321 TTGATAATACGCATGACATTGAGACCAGCAATAACACCAGCATCCTTAGTTGCCTGCCTC 46380 Query 518267 TGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCAT 518306 || ||||| || || || |||||||| || | || |||| Sbjct 46381 TGGGAATCATTGAAGTAAGCAGGAACGGTGACCACAGCAT 46420 >seq11181 Length=155859 Score = 105 bits (116), Expect = 5e-17 Identities = 146/203 (72%), Gaps = 6/203 (3%) Strand=Plus/Plus Query 518108 ACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATTTCTTTGTCT-TGGT- 518165 ||||| ||| |||||||| | ||||| || || |||||| | || | |||| Sbjct 141931 ACATCGAAGGTACCACCACCAAGGTCAAAGATGAGGACATTCTTCTCGCCAACACTGGTC 141990 Query 518166 ----TTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAA 518221 |||| || |||||||| |||| |||||||||||| || ||||| || || | || | Sbjct 141991 GCCTTTTTGTCCAGACCATAGGCAATAGCAGCAGCAGTCGGCTCATTGATGATACGCAGA 142050 Query 518222 ACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAA 518281 || || || |||||||| || ||||| || ||||| || || ||||| ||||| || Sbjct 142051 ACGTTGAGGCCAGCAATCACCCCAGCATCCTTGGTGGCCTGCCTCTGTGAGTCGTTGAAG 142110 Query 518282 TATGCAGGAACAGTAATAACGGC 518304 || || ||||| || | ||| || Sbjct 142111 TAGGCCGGAACTGTGACAACAGC 142133 >seq4406 Length=98560 Score = 98.7 bits (108), Expect = 8e-15 Identities = 139/194 (72%), Gaps = 6/194 (3%) Strand=Plus/Minus Query 518104 AGTTACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATTTCTTTGTCTTG 518163 || ||||||| ||| || || |||| ||||| | || | | |||| || | || Sbjct 39389 AGATACATCAAAGGTACCGCCTCCCAAGTCAAACACTAGAA---TTGTTTCATTATTTT- 39334 Query 518164 GTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAAC 518223 | || |||| |||||| || | | ||||||||||||||||||||||| | | ||| Sbjct 39333 --TCTTCTCAAAACCATAGGCCAGTGATGCAGCAGTTGGTTCATTAATAATACGAAGAAC 39276 Query 518224 ATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATA 518283 | || || ||||| | || |||||||| || ||| |||||||||||||| || || Sbjct 39275 TTCCAGCCCTGCAATACGGCCAGCATCTTTGGTTGCTGTCCTTTGTGAATCGTTGAAGTA 39216 Query 518284 TGCAGGAACAGTAA 518297 ||| || || |||| Sbjct 39215 TGCTGGGACTGTAA 39202 >seq14304 Length=24801 Score = 96.9 bits (106), Expect = 3e-14 Identities = 109/146 (75%), Gaps = 4/146 (3%) Strand=Plus/Plus Query 518165 TTTTTATCAAGACCATACGCAAAAGCA----GCAGCAGTTGGTTCATTAATAATTCTCAA 518220 || || ||||||||||| |||| |||| |||||||| || ||||| || || | | Sbjct 6599 TTCTTGTCAAGACCATAAGCAATAGCATGCAGCAGCAGTCGGCTCATTGATGATACGCGT 6658 Query 518221 AACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAA 518280 |||||| ||||||||||| || ||||| || ||||| || || || || || || || Sbjct 6659 AACATTGAGACCAGCAATCACCCCAGCATCCTTGGTGGCCTGCCTCTGAGAGTCATTGAA 6718 Query 518281 ATATGCAGGAACAGTAATAACGGCAT 518306 | ||||| ||||| ||||| |||| Sbjct 6719 GTTGGCAGGGACAGTGATAACAGCAT 6744 >seq11297 Length=44683 Score = 96.9 bits (106), Expect = 3e-14 Identities = 98/128 (77%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 518177 CCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCA 518236 ||||| | | |||||| || ||||||||||| || || ||| ||||| ||| |||||| Sbjct 38528 CCATAAGACAGAGCAGCTGCTGTTGGTTCATTGATGATCCTCTCAACATCAAGGCCAGCA 38469 Query 518237 ATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTA 518296 || | || ||||| || ||||| || | ||| | ||| || ||||| || ||||||||| Sbjct 38468 ATGCGGCCAGCATCCTTCGTGGCCTGACGTTGAGCATCATTGAAATAAGCTGGAACAGTA 38409 Query 518297 ATAACGGC 518304 || || || Sbjct 38408 ATCACTGC 38401 >seq12074 Length=29546 Score = 91.5 bits (100), Expect = 1e-12 Identities = 97/128 (76%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 518177 CCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCA 518236 ||||| | | |||||| || ||||||||||| || || || ||||| ||| |||||| Sbjct 18714 CCATAGGACAGAGCAGCTGCTGTTGGTTCATTGATGATCCTTTCAACATCAAGGCCAGCA 18655 Query 518237 ATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTA 518296 || | |||||||| || ||||| || | ||| | ||| || || ||||| |||||||| Sbjct 18654 ATGCGGCCTGCATCCTTTGTGGCCTGACGTTGAGCATCATTGAAGTATGCTGGAACAGTG 18595 Query 518297 ATAACGGC 518304 || || || Sbjct 18594 ATCACCGC 18587 >seq9702 Length=61918 Score = 91.5 bits (100), Expect = 1e-12 Identities = 196/292 (67%), Gaps = 6/292 (2%) Strand=Plus/Minus Query 518021 CGATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAA 518080 || || || || || |||||||| | | ||| | || | ||||| | || | ||| Sbjct 16446 CGGTTGTCGAAGTCCTCACCTCCAAGGTGAGTGTCACCCGCAGTAGCCTTCACCTCGAAG 16387 Query 518081 AGTCCATCTTCAAGAGACAAAAGAGTTACATCATGGGTTCCACCACCCATATCAAAAATA 518140 | || || |||| | | || | |||||| || |||||||| | || || || Sbjct 16386 ATGCCCTCCTCAATGGTGAGGAGTGACACATCAAACGTGCCACCACCGAGGTCGAAGATG 16327 Query 518141 AGTACATTCATTTCTTTGTCT----TGG--TTTTTATCAAGACCATACGCAAAAGCAGCA 518194 || |||||| | || | ||| || ||||||||||| || |||| |||||| Sbjct 16326 AGCACATTCTTCTCGCCCGCGCTGCTGGCCTTCTTATCAAGACCGTAGGCAATGGCAGCA 16267 Query 518195 GCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTA 518254 || || |||||||| || || | || |||||||| || ||||| || ||||| || Sbjct 16266 GCTGTGGGTTCATTGATGATACGCATCACATTAAGGCCGGCAATGACACCGGCATCCTTG 16207 Query 518255 GTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCAT 518306 ||||| || || || || ||||| || || || || || || | || |||| Sbjct 16206 GTGGCCTGCCTCTGCGAGTCGTTGAAGTAGGCCGGCACTGTCACCACAGCAT 16155 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3779957168245816