Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dichanthelium_20oligosanthes_20[genbank_20GCA_5F001633215.2_202016- 09-29] 17,436 sequences; 589,166,415 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq13858 150 2e-31 seq9779 138 1e-27 seq16195 125 9e-24 seq10755 104 3e-17 seq277 96.9 4e-15 seq8389 86.0 8e-12 >seq13858 Length=133588 Score = 150 bits (166), Expect = 2e-31 Identities = 122/148 (82%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 102173 CTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTT 102232 ||| || ||||| ||| |||| || || || || ||||| ||||||||||| || ||||| Sbjct 60216 CTTCGCCGAGCGCCTCGTCGCCTTCGCCTGCGTCGAGGGCATCTTCTTCTCGGGCTCCTT 60157 Query 102233 CTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGA 102292 |||||| || | |||||||||||||| || |||||||| || ||| |||||||||||| Sbjct 60156 CTGCGCCATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCGGGCCTCACCTTCTCCAACGA 60097 Query 102293 GCTTATCTCTCGTGACGAGGGACTCCAC 102320 ||| ||||| || |||||||| |||||| Sbjct 60096 GCTCATCTCCCGCGACGAGGGCCTCCAC 60069 >seq9779 Length=60839 Score = 138 bits (152), Expect = 1e-27 Identities = 252/364 (69%), Gaps = 4/364 (1%) Strand=Plus/Plus Query 15888 TCAAAGCGACCTGGGCGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTTGCGGCG 15947 |||||||| || || | ||| | || ||| | ||| ||| | || || || || || Sbjct 14083 TCAAAGCGTCCAGGTCTAAGCAAAGCAGAATCCAAGATGTCAGCACGGTTAGTGGCAGCA 14142 Query 15948 ATGACAACAATACCTGTTTCGTTATCAAAACCATCCATCTCTGTCAAAAGCTGGTTAATA 16007 || |||| || || || | ||||||||||||||||| ||||| |||||||| | | Sbjct 14143 ATAACAATAACTCCAGTGTTCCCCTCAAAACCATCCATCTCAGTCAACAGCTGGTTGAGA 14202 Query 16008 GTTTGTTCCCGTTCATCATTCGCTGGCATACCACCAGCACTGCGTTGCTTTCCCACGGCA 16067 || ||||||| ||||||||| | | ||| | || | |||| |||| || ||| Sbjct 14203 GTCTGTTCCCTTTCATCATTTCCACCACCAATACCTGTACCTCTTTGCCTTCCAACAGCA 14262 Query 16068 TCAATCTCATCAATGAAGACGATGCATGGTTGATT-TTCGCGAGCGACTTCAAAGAGATC 16126 ||||| ||||||| || || ||||| || ||| | | | | ||| ||| ||||| Sbjct 14263 TCAATTTCATCAACAAACACTATGCAAGGAGCATTCTCCTTGGCCTTCTTGAAA-AGATC 14321 Query 16127 CCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGAACATTG 16186 || || || || || ||||||||||||||||||||||| | | | | ||| |||| Sbjct 14322 ACGAACTCGGGAAGCACCAACACCAACAAACATCTCCACAAACTCAGAGCCAGAA-ATTG 14380 Query 16187 -GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTAC 16245 || || || ||| || || || ||||| || ||| || | ||| ||||| || | Sbjct 14381 AGAAAAATGGCACACCAGCCTCTCCAGCAATTGCCTTGGCAAGCAAAGTTTTACCAGTTC 14440 Query 16246 CTGG 16249 | || Sbjct 14441 CAGG 14444 >seq16195 Length=15917 Score = 125 bits (138), Expect = 9e-24 Identities = 98/117 (84%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 102204 GTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGT 102263 || ||||| |||||||||| || ||||||||||| || | ||||||||||||||| || Sbjct 113 GTAGAGGGCATCTTCTTCTTGGGCTCCTTCTGCGCCATCTTTTGGCTCAAGAAGCGTGGC 172 Query 102264 CTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGTGACGAGGGACTCCAC 102320 |||||||| || ||| ||||||||||||||| ||||| || |||||||| || ||| Sbjct 173 CTCATGCCGGGCCTCACCTTCTCCAACGAGCTCATCTCCCGCGACGAGGGCCTGCAC 229 >seq10755 Length=49669 Score = 104 bits (114), Expect = 3e-17 Identities = 93/117 (79%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 102204 GTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGT 102263 || ||||| ||||||||||| || ||||| ||||| || | |||||||||||||| | Sbjct 35748 GTAGAGGGCATCTTCTTCTCGGGCTCCTTTTGCGCCATCTTCTGGCTCAAGAAGCGCAGC 35807 Query 102264 CTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGTGACGAGGGACTCCAC 102320 ||||||| || ||| |||||||| |||||| ||||| || || ||||| || ||| Sbjct 35808 CTCATGCTGGGCCTCACCTTCTCCATCGAGCTCATCTCCCGCGATGAGGGCCTACAC 35864 >seq277 Length=113603 Score = 96.9 bits (106), Expect = 4e-15 Identities = 151/214 (71%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 15885 CGATCAAAGCGACCTGGGCGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTTGCG 15944 ||||| || | ||||| || || || || || || | |||| | || || ||| Sbjct 22597 CGATCGAACCTCCCTGGACGCAGAAGAGCCGAGTCCAGCACATCAGGCCTGTTGGTAGCG 22538 Query 15945 GCGATGACAACAATACCTGTTTCGTTATCAAAACCATCCATCTCTGTCAAAAGCTGGTTA 16004 |||| |||| | ||| | | | | | || ||||||||||| ||||| ||||||||| Sbjct 22537 GCGAGCACAATGACACCACTGTTGCCAGCGAAGCCATCCATCTCAGTCAAGAGCTGGTTA 22478 Query 16005 ATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCA--CCAGCACTGCGTTGCTTTCCCA 16062 ||||| || |||| ||||| || | || | | || |||| || ||| | || | Sbjct 22477 ATAGTCTGCTCCCTCTCATCGTTACC--GCCACCGAGTCCGGCACCACGCTGCCTCCCGA 22420 Query 16063 CGGCATCAATCTCATCAATGAAGACGATGCATGG 16096 | ||||||||||||||||||||||| ||||| || Sbjct 22419 CAGCATCAATCTCATCAATGAAGACAATGCAGGG 22386 >seq8389 Length=83750 Score = 86.0 bits (94), Expect = 8e-12 Identities = 73/90 (81%), Gaps = 0/90 (0%) Strand=Plus/Plus Query 102173 CTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTT 102232 ||| || ||||| ||| |||| || || || || ||||| ||||||||||| || ||||| Sbjct 80343 CTTCGCCGAGCGCCTCGTCGCCTTCGCCTGCGTCGAGGGCATCTTCTTCTCGGGCTCCTT 80402 Query 102233 CTGCGCTATTTATTGGCTCAAGAAGCGAGG 102262 |||||| || | |||||||||||||| || Sbjct 80403 CTGCGCCATCTTCTGGCTCAAGAAGCGCGG 80432 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620607109193920