Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dichanthelium_20oligosanthes_20[genbank_20GCA_5F001633215.2_202016- 09-29] 17,436 sequences; 589,166,415 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq8302 140 4e-28 seq277 109 6e-19 seq13858 96.9 4e-15 seq7477 93.3 5e-14 seq15847 82.4 9e-11 >seq8302 Length=151315 Score = 140 bits (154), Expect = 4e-28 Identities = 318/471 (68%), Gaps = 8/471 (2%) Strand=Plus/Minus Query 11503 CGATCGAAACGACCTGGGCGGAGTAGAGCATCATCAAGAATATCGACACGGTTTGTAGCG 11562 || ||||| || || |||||||| || || | || || || || ||||| || ||| Sbjct 103436 CGGTCGAAGCGGCCCGGGCGGAGCAGCGCGGCGTCGAGGATCTCCGGGCGGTTGGTGGCG 103377 Query 11563 GCAATGACTACAATGCCAGTCTCATTGTCGAAACCGTCCATTTCTGTGAGAAGCTGGTTG 11622 || ||||| | | ||| | || | ||| |||||||| || || || |||||||| Sbjct 103376 GCGATGACGATGACGCCGCTGTCGCCGCTGAACCCGTCCATCTCCGTCAGCAGCTGGTTC 103317 Query 11623 ATCGTCTGTTCACGCTCATCGTTGGAGG-GC--ATACCACCTGCCGAACGCTTCTTACCG 11679 | |||||| || | ||| |||||| || || || | ||||| |||| ||| Sbjct 103316 AGCGTCTGCTCCCTCTCGTCGTTGCCCCCGCCGATGCC-CGTGCCG--CGCTGGCGGCCG 103260 Query 11680 ACAGCGTCAATCTCATCGATGAATACGATACACGGTTGGTTGGCACGTGCCTGTTCGAAA 11739 || ||||| ||||| |||||||| |||| ||||| |||||| |||| | ||| Sbjct 103259 ACGGCGTCGATCTCGTCGATGAAGACGAGGCACGGCGCGTTGGCCTTGGCCTTGTTGAAG 103200 Query 11740 AGTTCACGTACACGCTTCGCTCCAACACCTACGAACATCTCAACGAAGTTTGCGGCAGAA 11799 || ||||| || ||| ||| || || || ||||||||||| | ||| | | | | | Sbjct 103199 AGGTCACGCACCCGCGACGCGCCCACGCCGACGAACATCTCGATGAACTCGGACCCCG-A 103141 Query 11800 CACTGA-ATGAAGGGAACATTAGACTCACCAGCGATGGCTCGAGCGAGGAGAGTCTTACC 11858 || || | |||||| || | ||| || |||||||| || || || ||||| || Sbjct 103140 CAGCGAGAAGAAGGGCACGCCGGCCTCCCCCGCGATGGCCTTCGCCAGCAGCGTCTTCCC 103081 Query 11859 CGTACCAGGTGCACCAGCGAGAAGGGCGCCACGGGGGATCTTGGCACCACTTCCAAAGTA 11918 ||| || || | || | || || |||| ||||||| | || ||| | | | | Sbjct 103080 CGTCCCCGGCGGTCCCACCAGCAGCACGCCCTTGGGGATCCTCGCCCCAATCGCCGTGAA 103021 Query 11919 GCGCTCAGGCTTCTTGAGGAAGTCCACAATCTCCTCAAGTTCCTCCTTGGC 11969 ||| ||| ||||||||| | ||| ||||||| | |||| |||||| Sbjct 103020 CTTCTCCGGCGACTTGAGGAACTGCACGATCTCCTGGAAGTCCTGCTTGGC 102970 >seq277 Length=113603 Score = 109 bits (120), Expect = 6e-19 Identities = 311/475 (65%), Gaps = 16/475 (3%) Strand=Plus/Minus Query 11503 CGATCGAAACGACCTGGGCGGAGTAGAGCATCATCAAGAATATCGACACGGTTTGTAGCG 11562 |||||||| | ||||| || || ||||| || || | ||| | ||| |||||| Sbjct 22597 CGATCGAACCTCCCTGGACGCAGAAGAGCCGAGTCCAGCACATCAGGCCTGTTGGTAGCG 22538 Query 11563 GCAATGACTACAATGCCAGTCTCATTGT------CGAAACCGTCCATTTCTGTGAGAAGC 11616 || || |||||| || || ||| |||| || ||||| || || | ||| Sbjct 22537 GC---GAGCACAATGACAC---CACTGTTGCCAGCGAAGCCATCCATCTCAGTCAAGAGC 22484 Query 11617 TGGTTGATCGTCTGTTCACGCTCATCGTTGGAGGGCATACCA--CCTGCCGAACGCTTCT 11674 ||||| || ||||| || | ||||||||| | || | | || || ||||| | Sbjct 22483 TGGTTAATAGTCTGCTCCCTCTCATCGTT--ACCGCCACCGAGTCCGGCACCACGCTGCC 22426 Query 11675 TACCGACAGCGTCAATCTCATCGATGAATACGATACACGGTTGGTTGGCACGTGCCTGTT 11734 | |||||||| ||||||||||| ||||| || || || || ||||| |||| | Sbjct 22425 TCCCGACAGCATCAATCTCATCAATGAAGACAATGCAGGGCGCCTTGGCCTTGGCCTTCT 22366 Query 11735 CGAAAAGTTCACGTACACGCTTCGCTCCAACACCTACGAACATCTCAACGAAGTTTGCGG 11794 |||| || || || || | || || ||||| ||||| | ||| ||||| | | | Sbjct 22365 CGAAGAGGTCGCGCACCCTGGAGGCACCGACACCGACGAAGAGCTCGACGAACTCGGACG 22306 Query 11795 CAGAACACTGAATGAAGGGAACATTAGACTCACCAGCGATGGCTCGAGCGAGGAGAGTCT 11854 ||| || | ||| || || | ||| || |||| ||| || ||||| || || | Sbjct 22305 CAGCGCAGGAGAAGAATGGCACCCCGGCCTCCCCGGCGACGGCACGCGCGAGCAGGGTTT 22246 Query 11855 TACCCGTACCAGGTGCACCAGCGAGAAGGGCGCCACGGGGGATCTTGGCACCACTTCCAA 11914 | || || ||||| | || |||| || || ||||||||||||||| | Sbjct 22245 TGCCTGTCCCAGGCGGGCCGACGAGGAGACAACCCTTGGGGATCTTGGCACCCAGCGCGG 22186 Query 11915 AGTAGCGCTCAGGCTTCTTGAGGAAGTCCACAATCTCCTCAAGTTCCTCCTTGGC 11969 ||| || || ||||||||||| || || | ||||| || || |||||| Sbjct 22185 TGTACTTGTCCGGGTTCTTGAGGAAATCGACGACCTCCTGCAGCTCGAGCTTGGC 22131 >seq13858 Length=133588 Score = 96.9 bits (106), Expect = 4e-15 Identities = 109/146 (75%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 119508 TGAAGCCCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCCAGGCATGAGTCCT 119567 || || || || || || ||||||||||| || |||| || || |||||||| || Sbjct 60070 TGGAGGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGGCCCGGCATGAGGCCG 60129 Query 119568 CTTTTCTTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGATGCCCTCCACACAG 119627 | ||||| ||||| |||||||| || || || || |||||||||||||| || ||| Sbjct 60130 CGCTTCTTGAGCCAGAAGATGGCGCAGAAGGAGCCCGAGAAGAAGATGCCCTCGACGCAG 60189 Query 119628 GCGAAAGCGAATAGACGCTCAGCAAA 119653 ||||| |||| || ||||| || || Sbjct 60190 GCGAAGGCGACGAGGCGCTCGGCGAA 60215 >seq7477 Length=85115 Score = 93.3 bits (102), Expect = 5e-14 Identities = 84/106 (79%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 109744 CGTCGGAGGTAGATGTTAGTCGTGTAGGGTTCGAAACACTCATTGTTGCCTAGGATTTGT 109803 ||||| ||| ||||||| |||||||||||| || ||||| |||||||| || || || Sbjct 78034 CGTCGACTGTATATGTTAGACGTGTAGGGTTCAAAGCACTCGTTGTTGCCAAGAATCTGA 77975 Query 109804 GCAGTGGAAGCTGTGGGCATGGGAGCCATGAGAAGACTGTTTCGGA 109849 ||||||||| |||||||| ||||| | |||||| ||||| || Sbjct 77974 CTAGTGGAAGCAGTGGGCATTGGAGCAACAAGAAGAGAGTTTCTGA 77929 >seq15847 Length=122834 Score = 82.4 bits (90), Expect = 9e-11 Identities = 69/85 (81%), Gaps = 0/85 (0%) Strand=Plus/Minus Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCGTT 136776 ||||||||||||||||||||| | ||||| | | |||||| ||||||||||||||| Sbjct 88764 TAGCTCAGTTGGTTAGAGCGTTGGTCTTATGAGCCGAAGGTCGCGGGTTCGAGCCCCGCC 88705 Query 136777 GGGAACAGCTTTTAGATATATTTTT 136801 |||| || |||| | || |||||| Sbjct 88704 GGGACCAATTTTTTGCTAGATTTTT 88680 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588847632680800