Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dichanthelium_20oligosanthes_20[genbank_20GCA_5F001633215.2_202016- 09-29] 17,436 sequences; 589,166,415 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq9779 134 2e-26 seq13858 123 3e-23 seq277 116 4e-21 seq9737 89.7 6e-13 >seq9779 Length=60839 Score = 134 bits (148), Expect = 2e-26 Identities = 249/363 (69%), Gaps = 2/363 (1%) Strand=Plus/Plus Query 9195 TCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCGGCG 9254 |||||||| || || | ||| | || ||| | ||| ||| | || || || || || Sbjct 14083 TCAAAGCGTCCAGGTCTAAGCAAAGCAGAATCCAAGATGTCAGCACGGTTAGTGGCAGCA 14142 Query 9255 ATGACAACAATACCTGTTTCATTATCAAAACCATCCATCTCTGTCAAAAGTTGGTTAATA 9314 || |||| || || || | ||||||||||||||||| ||||| || ||||| | | Sbjct 14143 ATAACAATAACTCCAGTGTTCCCCTCAAAACCATCCATCTCAGTCAACAGCTGGTTGAGA 14202 Query 9315 GTTTGTTCCCGTTCATCATTCGCTGGCATACCACCAGCACTGCGTTGCTTTCCCACGGCA 9374 || ||||||| ||||||||| | | ||| | || | |||| |||| || ||| Sbjct 14203 GTCTGTTCCCTTTCATCATTTCCACCACCAATACCTGTACCTCTTTGCCTTCCAACAGCA 14262 Query 9375 TCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCAAAGAGATCG 9434 ||||| ||||||| || || || || || ||| || ||| | | || ||||| Sbjct 14263 TCAATTTCATCAACAAACACTATGCAAGGAGCATTCTCCTTGGCCTTCTTGAAAAGATCA 14322 Query 9435 CGAACCCTTTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGAACATTG- 9493 ||||| | || || ||||||||||||||||||||||| | | | | ||| |||| Sbjct 14323 CGAACTCGGGAAGCACCAACACCAACAAACATCTCCACAAACTCAGAGCCAGAA-ATTGA 14381 Query 9494 GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACC 9553 || || || ||| || || || ||||| || ||| || | ||| ||||| || || Sbjct 14382 GAAAAATGGCACACCAGCCTCTCCAGCAATTGCCTTGGCAAGCAAAGTTTTACCAGTTCC 14441 Query 9554 TGG 9556 || Sbjct 14442 AGG 14444 >seq13858 Length=133588 Score = 123 bits (136), Expect = 3e-23 Identities = 116/148 (78%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 117285 GTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCATGAGACC 117344 |||||| ||||| || ||||| || || || || |||||| ||||| |||||||| || Sbjct 60069 GTGGAGGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGGCCCGGCATGAGGCC 60128 Query 117345 CCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACA 117404 |||||||| | ||| | || |||||||| || || ||||||||||| ||||| || || Sbjct 60129 GCGCTTCTTGAGCCAGAAGATGGCGCAGAAGGAGCCCGAGAAGAAGATGCCCTCGACGCA 60188 Query 117405 CGCAAACGCAAAAAGGCGCTCGGCGAAG 117432 || || || | ||||||||||||||| Sbjct 60189 GGCGAAGGCGACGAGGCGCTCGGCGAAG 60216 >seq277 Length=113603 Score = 116 bits (128), Expect = 4e-21 Identities = 273/408 (67%), Gaps = 8/408 (2%) Strand=Plus/Minus Query 9192 CGATCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCG 9251 ||||| || | |||||||| || || || || || | |||| | || || ||| Sbjct 22597 CGATCGAACCTCCCTGGACGCAGAAGAGCCGAGTCCAGCACATCAGGCCTGTTGGTAGCG 22538 Query 9252 GCGATGACAACAATACC--TGTTTCATTATCAAAACCATCCATCTCTGTCAAAAGTTGGT 9309 |||| |||| | ||| |||| | | | || ||||||||||| ||||| || |||| Sbjct 22537 GCGAGCACAATGACACCACTGTTGCC--AGCGAAGCCATCCATCTCAGTCAAGAGCTGGT 22480 Query 9310 TAATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCA--CCAGCACTGCGTTGCTTTCC 9367 ||||||| || |||| ||||| || | || | | || |||| || ||| | || Sbjct 22479 TAATAGTCTGCTCCCTCTCATCGTTACC--GCCACCGAGTCCGGCACCACGCTGCCTCCC 22422 Query 9368 CACGGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCAAA 9427 || |||||||||||||||||||||||||| || || || | ||| | || || Sbjct 22421 GACAGCATCAATCTCATCAATGAAGACAATGCAGGGCGCCTTGGCCTTGGCCTTCTCGAA 22362 Query 9428 GAGATCGCGAACCCTTTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGA 9487 ||| ||||| ||||| ||| || ||||| || || | ||| || || | | || | Sbjct 22361 GAGGTCGCGCACCCTGGAGGCACCGACACCGACGAAGAGCTCGACGAACTCGGACGCAGC 22302 Query 9488 ACATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACC 9547 || || ||| || || | || || || | ||| || ||||| || || || || Sbjct 22301 GCAGGAGAAGAATGGCACCCCGGCCTCCCCGGCGACGGCACGCGCGAGCAGGGTTTTGCC 22242 Query 9548 CGTACCTGGCTTACCCGCGAGGAGGGCACCCCGTGGAATCTTGGCGCC 9595 || || ||| || ||||||| |||| || |||||||| || Sbjct 22241 TGTCCCAGGCGGGCCGACGAGGAGACAACCCTTGGGGATCTTGGCACC 22194 >seq9737 Length=173456 Score = 89.7 bits (98), Expect = 6e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 106456 TGGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAA 106515 ||| | ||| ||||| || | |||||| ||||| || || || | ||| ||||| | Sbjct 48294 TGGTAAGGCAATTGAAGCTAGATTGCATACAGCAGTTTCTTCAGGACTTGTATACTCAAT 48353 Query 106516 AATTTCTGTACACAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTTTT 106575 || || |||||||||||||| |||||| || || | ||| | ||||||||| ||| | Sbjct 48354 TATCTCAGTACACAAGTTGGATGACTTAATTGTGCCAAGATTTTGTTGGTTACTTTTTCT 48413 Query 106576 GTTGCACGCATCCT 106589 |||||| | ||||| Sbjct 48414 GTTGCAAGTATCCT 48427 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589852213684640