Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dichanthelium_20oligosanthes_20[genbank_20GCA_5F001633215.2_202016- 09-29] 17,436 sequences; 589,166,415 total letters Query= NC_015279.1 Length=190789 Score E Sequences producing significant alignments: (Bits) Value seq16913 325 5e-84 seq10113 268 1e-66 seq12982 181 1e-40 seq666 170 2e-37 seq12572 116 5e-21 seq8160 95.1 1e-14 seq12273 86.0 8e-12 >seq16913 Length=117496 Score = 325 bits (360), Expect = 5e-84 Identities = 546/785 (70%), Gaps = 26/785 (3%) Strand=Plus/Minus Query 179738 GTGGGATAACTTCTGCGAGTGGGTAACCTCTACCAATAACCGCCTCTATGTCGGTTGGTT 179797 ||||| | |||||||| | ||| |||| ||| | ||||| || || |||| ||||| Sbjct 95231 GTGGGGTCACTTCTGCAACTGGATAACTAGCACCGAAAACCGTCTTTACATCGGATGGTT 95172 Query 179798 CGGCGTTCTGATGATTCCAACTCTGTTGGCAGCAACTATCTGCTTCATCGTCGCCTTCAT 179857 ||| ||| ||||||| | || | || | |||||| | || || |||||||||| Sbjct 95171 CGGTGTTTTGATGATCCGTACCTTATTAACCGCAACTTCCATATTTATTATCGCCTTCAT 95112 Query 179858 CGCTGCTCCCCCTGTGGACATCGATGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTA 179917 ||||||||| || || || || ||||| || ||||| || || || |||| | | || Sbjct 95111 CGCTGCTCCTCCGGTAGATATTGATGGTATTCGTGAGCCTGTTTCTAGTTCTTTACTTTA 95052 Query 179918 TGGTAACAACATCATCTCTGGTGCAGTTGTTCCTTC-----------TTCCAAC------ 179960 | | ||||| || || |||||||| || ||||| | |||| || Sbjct 95051 TAGAAACAATATTATATCTGGTGCTATTATTCCTGCAGAAACTATTATTCCTACTTCTGT 94992 Query 179961 -GCAATTGGTCTTCACTTCTATCCCATCTGGGAAGCCGCATCGCTTGACGAGTGGCTGTA 180019 ||||| || | || || || || || ||| || | ||||| |||| || ||| | || Sbjct 94991 GGCAATCGGATTGCATTTTTACCCAATTTGGAAAACTGCATCTGTTGATGAATGGTTATA 94932 Query 180020 TAACGGTGGTCCTTTCCAACTTGTCGTCTTCCACTTCCTGATTGGCATCTATGCCTACAT 180079 || ||||||||| | || | || | | || | |||| | | || || Sbjct 94931 AAATTGTGGTCCTTCTGAGCTAATTGTTCTATATTTTTTACTTGGTGTAGCTTGTTATAT 94872 Query 180080 GGGTCGTGAGTGGG-AACTTTCTTATCGCTTGGGTATGCGCCCCTGGATCTGCG-TAGCA 180137 |||||||||||||| ||||| || || |||||| |||||| ||||| ||| | ||| Sbjct 94871 GGGTCGTGAGTGGGGAACTTAGTTTCCGTCTGGGTACGCGCCCTTGGAT-TGCTATTGCA 94813 Query 180138 TATTCTGCTCCAGTCGCTGCAGCATCTGCTGTATTCCTCGTCTATCCTTTCGGTCAAGGT 180197 ||||| ||||| | || || || |||||| ||| | || || || | |||||||| Sbjct 94812 TATTCAGCTCCTTT-GCAGCTGCTAGTGCTGTTTTCTTGGTTTACTCTATTGGTCAAGGG 94754 Query 180198 TCATTCTCTGACGCAATGCCCCTCGGCATTTCTGGCACCTTCAACTACATGCTTGTTTTC 180257 ||||| || | |||| | || || ||||| | ||||||| || |||| ||| Sbjct 94753 AGTTTCTCCGATGGTGTGCCTTTAGGAATATCTGGTAT-TTCAACTTTATAATTGTATTC 94695 Query 180258 CAAGCAGAGCACAACATCCTGATGCACCCCTTCCACATGCTGGGAGTAGCAGGTGTCTTC 180317 || | ||||||||||||||| ||||| | || |||||| | || |||| ||||| ||| Sbjct 94694 CAGGTAGAGCACAACATCCTTATGCATTCATTTCACATGTTAGGTATAGCTGGTGTATTC 94635 Query 180318 GGCGGTTCACTGTTCTCCGCAATGCACGGTTCACTGGTTACCTCTTCACTGGTTCGTGAA 180377 |||||||| ||| || ||||| ||||| ||| |||||| || | | ||| Sbjct 94634 GGCGGTTCT---TTCAGCGTTATGCATGGTTCCTTGGCAACCTCTAGTTTGATCAGGGAA 94578 Query 180378 ACCACTGAAACTGAGTCCCAGAACTACGGTTACAAGTTTGGTCAAGAAGAAGAGACCTAC 180437 |||||||||| |||||| || | |||||||| |||||||||||||||||||| | Sbjct 94577 ACCACTGAAAATGAGTCTGCTAATGAAGGTTACAAATTTGGTCAAGAAGAAGAGACATGT 94518 Query 180438 AACATCGTTGCTGCACATGGATACTTCGGTCGTCTGATCTTCCAGTATGCATCGTTCAAC 180497 || ||||| ||||| || || || || ||||| | ||||| || ||||| | |||||| Sbjct 94517 AATATCGTGGCTGCTCACGGTTATTTTGGTCGATTAATCTTTCAATATGCTACTTTCAAC 94458 Query 180498 AACTC 180502 ||||| Sbjct 94457 AACTC 94453 >seq10113 Length=56568 Score = 268 bits (296), Expect = 1e-66 Identities = 479/693 (69%), Gaps = 5/693 (1%) Strand=Plus/Minus Query 181454 GACCGCTTTGTCTTTGTGGGCTGGTCTGGACTACTTCTTTTTCCCACTGCTTATCTTGCA 181513 |||| ||||| ||||| | |||||||| ||| | || ||||| ||||||| |||| Sbjct 48539 GACCATTTTGTTTTTGTATGATGGTCTGGCCTATTGCTCTTTCCTTGTGCTTATTTTGCT 48480 Query 181514 ATTGGGGGCTGGCTCACTGGCACTACTTTTGTTACGTCGTGGTACACCCACGGATTGGCG 181573 | ||||| ||| | || || ||||||||||| || || ||||| ||||| ||||||| Sbjct 48479 TTAGGGGGTTGGTTTACAGGRACTACTTTTGTAACTTCTTGGTATACCCATGGATTGGAT 48420 Query 181574 TCTTCCTACCTTG-AGGGTGCTAATTTCCTTACAGCGGCTGTGTCAACGCCTGCTGACGC 181632 |||||| | | ||| ||| |||||| | |||||||| || || |||||| | Sbjct 48419 AGTTCCTATTTGGAAGGATGC-AATTTCTTAACAGCGGCGGTTATCACTCCTGCTAATAG 48361 Query 181633 TATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAAGCTCAGGGCGATTTCGTCCGCTG 181692 | | | || ||| | | ||||| ||||| | |||| ||||| ||||| || || Sbjct 48360 TTTAGCACACTCTTTGTTACTACTATGGGGCCTGGAAGAACAGGGGGATTTTACTCGTTG 48301 Query 181693 GGTCCAACTTGGGGGACTCTGGGCTTTTGTGGCGCTCCACGGAGCCTTCGCTCTTATCGG 181752 ||| | || || || ||| ||||||| || ||||| || || || || || || Sbjct 48300 ATGTCAATTAGGTGGTCTGTGGACTTTTGTCGCTCTCCATGGGGCTTTTATGCTAATAGG 48241 Query 181753 TTTTATGCTCAGGCAATTTGAACTTGCTC-GTCTAATCGGAATCCGACCCTACAATGCGA 181811 ||| ||| | | |||||||||| ||||| |||| || | | || || || ||||| | Sbjct 48240 TTTCATGTTACGTCAATTTGAACATGCTCAGTCTGTTC-AATTGCGGCCTTATAATGCAA 48182 Query 181812 TTGCTTTTTCCGGTCCTATTGCTG-TATTCGTCTCTGTATTTCTCATCTATCCTCTGGGA 181870 || | || || |||| | || | || || | |||||| || | ||||| ||||| Sbjct 48181 TTTCATTCTCTAGTCCAACCATTGTTTTTTGTTTTTGTATTCCTTGTTTATCCAATGGGA 48122 Query 181871 CAATCCAGTTGGTTCTTTGCGCCGAGTTTCGGTGTCGCGGCGATTTTCCGCTTCCTTCTC 181930 ||||| ||| |||||||| || |||||| || | | | || || | ||| | || Sbjct 48121 CAATCTGGTTAGTTCTTTGTGCTGAGTTTTGGCATAGAAGTTATATTTCAATTCATCCTT 48062 Query 181931 TTCCTCCAGGGCTTTCATAATTGGACGCTCAATCCCTTCCATATGATGGGTGTTGCTGGT 181990 ||| |||| || |||| |||||||||| | || || || ||||||||||| ||||| || Sbjct 48061 TTCTTCCAAGGATTTCCTAATTGGACGTTAAACCCATTTCATATGATGGGGGTTGCCGGA 48002 Query 181991 ATCCTGGGTGGCGCATTACTCTCTGCAATTCACGGTGTGACCGTGGAGAATACTCTGTAT 182050 | | || | || | || | | || || || | ||| | || || ||||| | Sbjct 48001 GTATTAGGCGCAGCTCTGCTATGCTCTATCCATGGGGCTACCATAGAAAACACTCTATTC 47942 Query 182051 CAAGACGGTGACCAAGCAAATACTTTCAAAGCATTCGATTCAACTCAAGAAGAAGAAACC 182110 |||| | ||| |||||||| ||| | || | | ||||||||| |||||||| Sbjct 47941 AAAGATGATGATGGTGCAAATACCTTCTATGCTTGTAACGCAACTCAAGCTGAAGAAACT 47882 Query 182111 TATTCAATGGTTACAGCGAACCGCTTCTGGTCT 182143 ||||||||| | || | ||| |||| |||||| Sbjct 47881 TATTCAATGATCACTACTAACAGCTTTTGGTCT 47849 Score = 136 bits (150), Expect = 5e-27 Identities = 203/284 (71%), Gaps = 3/284 (1%) Strand=Plus/Minus Query 182138 TGGTCTCAGATCTTCGGTATTGCGTTTAGCAATAAGAGGTGGTTGCATTTCTTTATGCTC 182197 ||||| || || || ||| || | ||| |||||| | ||||| |||||||||||||| Sbjct 1009 TGGTCCCAAATATTTGGTGTTTCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGCTA 950 Query 182198 TTTGTTCCTGTTATGGGTCTTTGGACAAGTTCCATCGGTATTATTGGTCTTGCTCTCAAC 182257 |||| | ||| || || | | || | | | || || | ||| || ||||| ||| Sbjct 949 CTTGTACTTGTAATCAGTTTATAGATGACTGCTATTGGC-TAGTTGCCCTGGCTCTGAAC 891 Query 182258 CTTCGTGCTTATGACTTTGTATCCCAAGAAATCAGAGCATCAGAAGACCCAGAGTTCGAG 182317 || |||| ||||| ||| | ||||| ||||| | ||| ||||||| || || || ||| Sbjct 890 CTATGTGCCTATGA-TTTCT-TCCCAGAAAATCCGTGCAGCAGAAGATCCTGAATTTGAG 833 Query 182318 ACGTTCTACACAAAGAACATTCTCTTGAATGAAGGTCTGCGTGCATGGTTAGCACCAGTC 182377 || |||||||| || | ||||| || ||||| ||| | | ||| ||| | ||| | Sbjct 832 ACTTTCTACACCAAATATATTCTTTTAAATGAGGGTATTCATGCGTGGATGGCAGCTCAG 773 Query 182378 GATCAACCACATGAGAACTTTGTGTTCCCTGAGGAAGTATTACC 182421 ||||| || ||||| || || | ||||||||||| || |||| Sbjct 772 GATCAGCCTCATGAAAATCTTATATTCCCTGAGGAGGTTCTACC 729 >seq12982 Length=32303 Score = 181 bits (200), Expect = 1e-40 Identities = 343/502 (68%), Gaps = 2/502 (0%) Strand=Plus/Plus Query 179738 GTGGGATAACTTCTGCGAGTGGGTAACCTCTACCAATAACCGCCTCTATGTCGGTTGGTT 179797 ||||| | ||||||| | | | |||| ||| | |||| || || |||| ||||| Sbjct 463 GTGGGGTCGCTTCTGCAACTAGATAACTAGCACCGAACACCGTCTTTACATCGGATGGTT 522 Query 179798 CGGCGTTCTGATGATTCCAACTCTGTTGGCAGCAACTATC-TGCTTCATCGTCGCCTTCA 179856 || ||| ||||||| || || | ||| | |||||| | | ||| || || |||||| Sbjct 523 TGGTGTTTTGATGATCCCTACCTTATTGACCGCAACTTCCGTACTT-ATTATCACCTTCA 581 Query 179857 TCGCTGCTCCCCCTGTGGACATCGATGGCATCCGTGAACCCGTCGCTGGTTCACTCATGT 179916 |||||||||| || || || || ||||| || ||||| || || ||||||| | || | Sbjct 582 TCGCTGCTCCTCCAGTAGATATTGATGGTATTCGTGAGCCTGTTTCTGGTTCTTTAATTT 641 Query 179917 ATGGTAACAACATCATCTCTGGTGCAGTTGTTCCTTCTTCCAACGCAATTGGTCTTCACT 179976 |||| |||| || ||||||||||| || ||||| ||| | || || | || | Sbjct 642 ATGGAAACAGTATTATCTCTGGTGCTATTATTCCTACTTATGTGACGATCGGATTGCATT 701 Query 179977 TCTATCCCATCTGGGAAGCCGCATCGCTTGACGAGTGGCTGTATAACGGTGGTCCTTTCC 180036 | || || || ||| |||| ||||| |||| || ||| | || || || ||||||| Sbjct 702 TTTACCCAATTTGGAAAGCTGCATCCGTTGATGAATGGTTATACAATGGCGGTCCTTATG 761 Query 180037 AACTTGTCGTCTTCCACTTCCTGATTGGCATCTATGCCTACATGGGTCGTGAGTGGGAAC 180096 | || | || | || ||| | |||| | | || |||| |||||| ||||||| Sbjct 762 ACCTAATTGTTCTACATTTCTTACTTGGTGTAGCTTGTTATATGGATCGTGACTGGGAAC 821 Query 180097 TTTCTTATCGCTTGGGTATGCGCCCCTGGATCTGCGTAGCATATTCTGCTCCAGTCGCTG 180156 || || | |||||||||||| ||||| || |||||||| ||||| || || | Sbjct 822 TTAGTTTCCATCTGGGTATGCGCCTTTGGATTGTTGTTGCATATTCAGCTCCTGTTGCAG 881 Query 180157 CAGCATCTGCTGTATTCCTCGTCTATCCTTTCGGTCAAGGTTCATTCTCTGACGCAATGC 180216 || ||||| | ||| | | || ||| | ||||||| || ||||| | |||| Sbjct 882 TTGCTACTGCTATTTTCTTGATTTACCCTATTGGTCAAGAAAGTTTTTCTGATGGTATGC 941 Query 180217 CCCTCGGCATTTCTGGCACCTT 180238 | | || || ||||| || || Sbjct 942 CTTTAGGAATATCTGGTACTTT 963 >seq666 Length=229199 Score = 170 bits (188), Expect = 2e-37 Identities = 186/247 (75%), Gaps = 0/247 (0%) Strand=Plus/Minus Query 182092 AACTCAAGAAGAAGAAACCTATTCAATGGTTACAGCGAACCGCTTCTGGTCTCAGATCTT 182151 |||||||| |||||||| |||||||||||||| || | ||||| |||||||| ||||| Sbjct 152526 AACTCAAGCTGAAGAAACTTATTCAATGGTTACTGCTTATCGCTTTTGGTCTCAAATCTT 152467 Query 182152 CGGTATTGCGTTTAGCAATAAGAGGTGGTTGCATTTCTTTATGCTCTTTGTTCCTGTTAT 182211 ||| |||| ||| |||||| | ||||| |||||||||||| | ||||| || || | Sbjct 152466 TGGTGTTGCTTTTCTCAATAAAGGCTGGTTACATTTCTTTATGTTATTTGTACCCGTCAC 152407 Query 182212 GGGTCTTTGGACAAGTTCCATCGGTATTATTGGTCTTGCTCTCAACCTTCGTGCTTATGA 182271 ||| | |||| ||| | || || | |||| || ||| | ||||| ||||||| ||| Sbjct 152406 CGGTTTATGGATGAGTGCTATTGGCGTAGTTGGCCTGGCTTTGAACCTACGTGCTTGTGA 152347 Query 182272 CTTTGTATCCCAAGAAATCAGAGCATCAGAAGACCCAGAGTTCGAGACGTTCTACACAAA 182331 ||| | ||||| |||||| ||| | ||||| || || || ||||| ||||| | || Sbjct 152346 CTTCATTTCCCAGGAAATCCATGCAGCGGAAGATCCTGAATTTGAGACTTTCTATGCCAA 152287 Query 182332 GAACATT 182338 || ||| Sbjct 152286 AAATATT 152280 >seq12572 Length=34890 Score = 116 bits (128), Expect = 5e-21 Identities = 344/528 (65%), Gaps = 2/528 (0%) Strand=Plus/Minus Query 181454 GACCGCTTTGTCTTTGTGGGCTGGTCTGGACTACTTCTTTTTCCCACTGCTTATCTTGCA 181513 ||||| || || ||| | ||||| || ||| | || ||||| ||||||| | || Sbjct 27219 GACCGTTTCGTTTTTTTTTTTTGGTCCGGCCTATTGCTCTTTCCTTGTGCTTATTTCGCT 27160 Query 181514 ATTGGGGGCTGGCTCACTGGCACTACTTTTGTTACGTCGTGGTACACCCACGGATTGGCG 181573 || ||| | || || ||||||||||| || || ||||| || ||||| Sbjct 27159 TTTTTTTTTTGGTTTACAGGGACTACTTTTGTAACTTCTTGGTATACTTTTTTTTTGGCT 27100 Query 181574 TCTTCCTACCTTGAGGGTGCTAATTTCCTTACAGCGGCTGTGTCAACGCCTGCTGACGCT 181633 |||||| | || ||| |||||| | || | | | || || ||||| | | Sbjct 27099 AGTTCCTATTTGGAAGGTTGCAATTTCTTAACCGTTTTTTTTTCCACTCCTGCCAATAGT 27040 Query 181634 ATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAAGCTCAGGGCGATTTCGTCCGCTGG 181693 | | || ||| | | ||| ||| || ||||| ||||| ||||| || ||| Sbjct 27039 TTAGCACACTCTTTGTTACTATTTTTTTTCCCGGAAGCACAGGGGGATTTTACTCGTTGG 26980 Query 181694 GTCCAACTTGGGGGACTCTGGGCTTTTGTGGCGCTCCACGGAGCCTTCGCTCTTATCGGT 181753 ||| || | ||| ||||||| || ||||| || || || || || || | Sbjct 26979 TGTCAATTTTTTTTTTTGTGGACTTTTGTCGCTCTCCATGGGGCTTTTGCACTAATTTTT 26920 Query 181754 TTTATGCTCAGGCAATTTGAACTTGCTCG-TCTAATCGGAATCCGACCCTACAATGCGAT 181812 |||||| | | ||||||||||||||||| ||| || | | | ||||| || Sbjct 26919 TTTATGTTACGTCAATTTGAACTTGCTCGGTCTGTTCA-ATTGTTTTTTTTTAATGCAAT 26861 Query 181813 TGCTTTTTCCGGTCCTATTGCTGTATTCGTCTCTGTATTTCTCATCTATCCTCTGGGACA 181872 | | || || ||||| | ||||| || || | | | || || || ||||| |||||||| Sbjct 26860 TTCATTCTCTGGTCCGTTCGCTGTTTTTGTTTTTTTTTTCCTTATTTATCCACTGGGACA 26801 Query 181873 ATCCAGTTGGTTCTTTGCGCCGAGTTTCGGTGTCGCGGCGATTTTCCGCTTCCTTCTCTT 181932 ||| |||||||||||| ||| || || || || || || || ||| | || || Sbjct 26800 ATCTGGTTGGTTCTTTGTTTTTTTTTTTGGCGTAGCAGCTATATTTCGATTCATCCTTTT 26741 Query 181933 CCTCCAGGGCTTTCATAATTGGACGCTCAATCCCTTCCATATGATGGG 181980 | || |||||||||||||| | || || || ||||||||||| Sbjct 26740 CTTCTTTTTTTTTCATAATTGGACATTAAACCCATTTCATATGATGGG 26693 >seq8160 Length=957 Score = 95.1 bits (104), Expect = 1e-14 Identities = 105/140 (75%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 180377 AACCACTGAAACTGAGTCCCAGAACTACGGTTACAAGTTTGGTCAAGAAGAAGAGACCTA 180436 || || ||||| |||||| || | |||||||| |||| | |||||||||||||||| Sbjct 319 AAACAATGAAAATGAGTCTGCTAATGAGGGTTACAAATTTGATTAAGAAGAAGAGACCTA 378 Query 180437 CAACATCGTTGCTGCACATGGATACTTCGGTCGTCTGATCTTCCAGTATGCATCGTTCAA 180496 || || || ||||| |||| || || ||||| | |||||||| ||| | ||||| Sbjct 379 TAATATTGTGGCTGCTCATGATTATTTTGGTCGATTAATCTTCCAATATCCTAGTTTCAA 438 Query 180497 CAACTCCCGTTCACTTCACT 180516 |||||| ||||| | |||| Sbjct 439 CAACTCTCGTTCTTTACACT 458 >seq12273 Length=37008 Score = 86.0 bits (94), Expect = 8e-12 Identities = 76/95 (80%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 180505 GTTCACTTCACTTCTTCCTGGCAGCATGGCCTGTCGTTGGCATCTGGTTCACTGCACTGG 180564 |||| | ||||||||| |||| || |||||||| || || |||||||||||||| | | Sbjct 29536 GTTCTTTACACTTCTTCTTGGCTGCTTGGCCTGTAGTAGGGATCTGGTTCACTGCTTTAG 29477 Query 180565 GCGTAAGCACCATGGCATTCAACCTCAACGGTTTC 180599 | | || || |||||||||||||| || |||||| Sbjct 29476 GTATTAGTACTATGGCATTCAACCTAAATGGTTTC 29442 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 610263764017440