Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dichanthelium_20oligosanthes_20[genbank_20GCA_5F001633215.2_202016- 09-29] 17,436 sequences; 589,166,415 total letters Query= NC_015280.1 Length=181044 Score E Sequences producing significant alignments: (Bits) Value seq16913 257 2e-63 seq12982 152 6e-32 seq10113 123 3e-23 seq666 93.3 5e-14 seq12503 91.5 2e-13 >seq16913 Length=117496 Score = 257 bits (284), Expect = 2e-63 Identities = 505/738 (68%), Gaps = 34/738 (5%) Strand=Plus/Minus Query 169444 GGTTGGTTTGGTGTTCTAATGATTCCATGCTTACTCACAGCAGCAGC-ATGTTTCATCGT 169502 || ||||| |||||| | ||||| | |||| | || ||| | | || ||| || | Sbjct 95179 GGATGGTTCGGTGTTTTGATGATCCGTACCTTATTAACCGCAACTTCCATATTT-ATTAT 95121 Query 169503 TGCATTCATTGCAGCACCTCCTGTCGATATCGACGGAATCAGAGAACCAGTAGCGGGTTC 169562 || ||||| || || ||||| || ||||| || || || | || || || | |||| Sbjct 95120 CGCCTTCATCGCTGCTCCTCCGGTAGATATTGATGGTATTCGTGAGCCTGTTTCTAGTTC 95061 Query 169563 TTTCTTGTATGGTAACAACATCATCTCTGGTGCAGTTGTTCCATCATCAA---------- 169612 ||| | ||| | ||||| || || |||||||| || |||| || || Sbjct 95060 TTTACTTTATAGAAACAATATTATATCTGGTGCTATTATTCCTGCAGAAACTATTATTCC 95001 Query 169613 -AC-------GCTATCGGACTACACTTCTACCCAATCTGGGAAGCAGCAACTGTTGATGA 169664 || || |||||| | || || |||||||| ||| || | ||| |||||||||| Sbjct 95000 TACTTCTGTGGCAATCGGATTGCATTTTTACCCAATTTGGAAAACTGCATCTGTTGATGA 94941 Query 169665 ATGGTTGTATAATGGTGGTCCTTATCAGTTGGTAATCTTCCAC-TTCCTTA-TTGGTATC 169722 |||||| || ||| ||||||||| | || | | | ||| | || ||| ||||| | Sbjct 94940 ATGGTTATAAAATTGTGGTCCTTCTGAGCTAAT--TGTTCTATATTTTTTACTTGGTGTA 94883 Query 169723 TCAGCATACATGGGAAGACAGTGGG-AACTATCATACAGATTAGGAATGCGTCCTTGGAT 169781 | || ||||| | |||||| |||| | | | | || | ||| |||||||| Sbjct 94882 GCTTGTTATATGGGTCGTGAGTGGGGAACTTAGTTTCCGTCTGGGTACGCGCCCTTGGAT 94823 Query 169782 CTGTGTTGCATACTCTGCACCAGTATCTGCTGCATTCGCTGTATTCTTAGTATACCCATT 169841 | ||||||| || || || | | ||||| ||||| ||||| || ||| | | Sbjct 94822 TGCTATTGCATATTCAGCTCCTTTG-CAGCTGCTAGTGCTGTTTTCTTGGTTTACTCTAT 94764 Query 169842 TGGTCAGGGTTCATTCTCTGATGGTATGCCACTAGGTATCTCAGGTACTTTCAACTTTAT 169901 |||||| || ||||| |||||| |||| |||| || || |||| |||||||||||| Sbjct 94763 TGGTCAAGGGAGTTTCTCCGATGGTGTGCCTTTAGGAATATCTGGTA-TTTCAACTTTAT 94705 Query 169902 GTTCGTTTTCCAAGCAGAGCATAACATTCTAATGCATCCTTTCCACATGGCAGGAGTAGC 169961 | || ||||| | |||||| ||||| || |||||| | || |||||| ||| |||| Sbjct 94704 AATTGTATTCCAGGTAGAGCACAACATCCTTATGCATTCATTTCACATGTTAGGTATAGC 94645 Query 169962 AGGAATGTTCGGAGGATCTTTATTCTCAGCA--ATGCATGGTTCACTTGTTACTTCATCT 170019 || | ||||| || ||||| |||| ||||||||||| | | || || | Sbjct 94644 TGGTGTATTCGGCGGTTCTTT-----CAGCGTTATGCATGGTTCCTTGGCAACCTCTAGT 94590 Query 170020 CTAATCAGAGAAACAACAGAGCAAGAGTCACAGAACTATGGTTATAAGTTCGGACAAGAA 170079 | ||||| ||||| || || | ||||| || | ||||| || || || |||||| Sbjct 94589 TTGATCAGGGAAACCACTGAAAATGAGTCTGCTAATGAAGGTTACAAATTTGGTCAAGAA 94530 Query 170080 GAAGAAACATACAACATAGTAGCAGCACACGGTTACTTTGGTCGTCTTATCTTCCAGTAT 170139 ||||| |||| || || || || || |||||||| |||||||| | ||||| || ||| Sbjct 94529 GAAGAGACATGTAATATCGTGGCTGCTCACGGTTATTTTGGTCGATTAATCTTTCAATAT 94470 Query 170140 GCTTCATTCAACAACTCA 170157 ||| | |||||||||||| Sbjct 94469 GCTACTTTCAACAACTCA 94452 >seq12982 Length=32303 Score = 152 bits (168), Expect = 6e-32 Identities = 309/453 (68%), Gaps = 8/453 (2%) Strand=Plus/Plus Query 169444 GGTTGGTTTGGTGTTCTAATGATTCCATGCTTACTCACAGCAGCAGCATGTTTCATCGTT 169503 || |||||||||||| | ||||| || |||| | || ||| | | | || | Sbjct 515 GGATGGTTTGGTGTTTTGATGATCCCTACCTTATTGACCGCAACTTCCGTACTTATTATC 574 Query 169504 GCATTCATTGCAGCACCTCCTGTCGATATCGACGGAATCAGAGAACCAGTAGCGGGTTCT 169563 | ||||| || || ||||| || ||||| || || || | || || || | |||||| Sbjct 575 ACCTTCATCGCTGCTCCTCCAGTAGATATTGATGGTATTCGTGAGCCTGTTTCTGGTTCT 634 Query 169564 TTCTTGTATGGTAACAACATCATCTCTGGTGCAGTTGTTCCATC--ATCAAACGCTATCG 169621 || | ||||| |||| || ||||||||||| || |||| | || ||| |||| Sbjct 635 TTAATTTATGGAAACAGTATTATCTCTGGTGCTATTATTCCTACTTATGTGACG--ATCG 692 Query 169622 GACTACACTTCTACCCAATCTGGGAAGCAGCAACTGTTGATGAATGGTTGTATAATGGTG 169681 || | || || |||||||| ||| |||| ||| | |||||||||||||| || ||||| | Sbjct 693 GATTGCATTTTTACCCAATTTGGAAAGCTGCATCCGTTGATGAATGGTTATACAATGGCG 752 Query 169682 GTCCTTATCAGTTGGTAATCTTCCAC-TTCCTTA-TTGGTATCTCAGCATACATGGGAAG 169739 |||||||| | | | | ||| || || |||| ||||| | | || |||| | Sbjct 753 GTCCTTATGACCT--AATTGTTCTACATTTCTTACTTGGTGTAGCTTGTTATATGGATCG 810 Query 169740 ACAGTGGGAACTATCATACAGATTAGGAATGCGTCCTTGGATCTGTGTTGCATACTCTGC 169799 | |||||||| | | | || ||||| | |||||| ||||||||| || || Sbjct 811 TGACTGGGAACTTAGTTTCCATCTGGGTATGCGCCTTTGGATTGTTGTTGCATATTCAGC 870 Query 169800 ACCAGTATCTGCTGCATTCGCTGTATTCTTAGTATACCCATTTGGTCAGGGTTCATTCTC 169859 || || | | ||| ||| | ||||| | ||||| ||||||| | || || Sbjct 871 TCCTGTTGCAGTTGCTACTGCTATTTTCTTGATTTACCCTATTGGTCAAGAAAGTTTTTC 930 Query 169860 TGATGGTATGCCACTAGGTATCTCAGGTACTTT 169892 |||||||||||| |||| || || |||||||| Sbjct 931 TGATGGTATGCCTTTAGGAATATCTGGTACTTT 963 >seq10113 Length=56568 Score = 123 bits (136), Expect = 3e-23 Identities = 242/356 (68%), Gaps = 12/356 (3%) Strand=Plus/Minus Query 170529 TTTGATGTTCTTGACGACTGGTTAAAGAGAGATCGTTTTGTATTCATAGGATGGTCTGGT 170588 |||||| || | ||||||| |||| || || | |||||| || || |||||||||| Sbjct 48569 TTTGATATTATGGACGACTTGTTACGAAGGGACCATTTTGTTTTTGTATGATGGTCTGGC 48510 Query 170589 CTTTTACTTCTGCCTTGTGCATACCTATCAATCGGTGGTTGGTTCTTAGGGACTACCTTC 170648 || || || | |||||||| || | | | || |||||||| ||| ||||| || Sbjct 48509 CTATTGCTCTTTCCTTGTGCTTATTTTGCTTTAGGGGGTTGGTTTACAGGRACTACTTTT 48450 Query 170649 GTTACATCATGGTATACACATGGTGTTGCTTCCTCATATCTTGAGGGATGTAACTTCCTA 170708 || || || |||||||| ||||| | | | || ||| | || ||||| || ||| || Sbjct 48449 GTAACTTCTTGGTATACCCATGGATTGGATAGTTCCTATTTGGAAGGATGCAATTTCTTA 48390 Query 170709 ACAGCAGCAGTTTCCACACCTGGCGACGCAATGGGT---CATAGTCTTCTGTTCCTT--- 170762 ||||| || ||| ||| |||| ||| | | || | |||| |||| || Sbjct 48389 ACAGCGGCGGTTATCACTCCTGCT-----AATAGTTTAGCACACTCTT-TGTTACTACTA 48336 Query 170763 TGGGGACCTGAAGCACAAGGTTCATTTGTTCGTTGGTTACAACTCGGAGGTTTATGGAAC 170822 ||||| | |||| ||| || ||| |||||| | ||| | || ||| | |||| Sbjct 48335 TGGGGCCTGGAAGAACAGGGGGATTTTACTCGTTGATGTCAATTAGGTGGTCTGTGGACT 48276 Query 170823 TTTGTAGCATTACATGGAGTCTTTGGACTCATAGGTTTCATGCTCAGACAATTTGA 170878 ||||| || | ||||| | ||| || |||||||||||| | | |||||||| Sbjct 48275 TTTGTCGCTCTCCATGGGGCTTTTATGCTAATAGGTTTCATGTTACGTCAATTTGA 48220 Score = 105 bits (116), Expect = 8e-18 Identities = 209/305 (69%), Gaps = 7/305 (2%) Strand=Plus/Minus Query 171264 TGGTCACAGATATTTGGTATTGCTTTCTCTAACAAAAGATTTTTACACTTCCTTATGTTG 171323 ||||| || ||||||||| || |||| || || ||| | | ||||| ||| ||||| | Sbjct 1009 TGGTCCCAAATATTTGGTGTTTCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGCTA 950 Query 171324 TTCGTTCCTGTCATGGGTATGTGGACATCATCTATAGGTATCGTAGGTCTAGCACTTAAC 171383 | || | ||| || || | | || | |||| || | || | || || || ||| Sbjct 949 CTTGTACTTGTAATCAGTTTATAGATGACTGCTATTGGC-TAGTTGCCCTGGCTCTGAAC 891 Query 171384 CTCAGAGCATACGATTTTGTATCTCAAGAGATAAGAGCAGCAGAAGACCCAGAGTTCGAG 171443 || | || || ||||| | | || | || | ||||||||||| || || || ||| Sbjct 890 CTATGTGCCTATGATTTCTT--CCCAGAAAATCCGTGCAGCAGAAGATCCTGAATTTGAG 833 Query 171444 ACTTTCTACACTAAGAATATACTTCTTAATGAAGGTATGAGAGCATGGATGTCA--TCAG 171501 ||||||||||| || |||| ||| | ||||| ||||| || |||||| || |||| Sbjct 832 ACTTTCTACACCAAATATATTCTTTTAAATGAGGGTATTCATGCGTGGATGGCAGCTCAG 773 Query 171502 TTGACCAACCACATGAGAACTTCGTATTCCCAGAAGAAGTGTTACCAAGAGGTAACGCAC 171561 || || || ||||| || | ||||||| || || || ||||| | || | ||| Sbjct 772 --GATCAGCCTCATGAAAATCTTATATTCCCTGAGGAGGTTCTACCATGTGGAATCGCTT 715 Query 171562 TTTAA 171566 ||||| Sbjct 714 TTTAA 710 >seq666 Length=229199 Score = 93.3 bits (102), Expect = 5e-14 Identities = 192/282 (68%), Gaps = 4/282 (1%) Strand=Plus/Minus Query 171198 ACATTCCGTGCCTTTGATCCTACACAGGAAGAAGAAACTTACAGTATGATTACAGCAAAC 171257 || |||||||| ||| | | || || | ||||||||||| ||| |||| || | Sbjct 152546 ACCTTCCGTGCTTTTAACCTAACTCAAGCTGAAGAAACTTATTCAATGGTTACTGCTTAT 152487 Query 171258 AGATTCTGGTCACAGATATTTGGTATTGC-TTTCTCTAACAAAAGATTTTTACACTTCCT 171316 | || ||||| || || |||||| |||| |||||| || ||| | | ||||| ||| | Sbjct 152486 CGCTTTTGGTCTCAAATCTTTGGTGTTGCTTTTCTC-AATAAAGGCTGGTTACATTTCTT 152428 Query 171317 TATGTTGTTCGTTCCTGTCATGGGTATGTGGACATCATCTATAGGTATCGTAGGTCTAGC 171376 |||||| || || || |||| ||| | |||| |||| || | || || || || Sbjct 152427 TATGTTATTTGTACCCGTCACCGGTTTATGGATGAGTGCTATTGGCGTAGTTGGCCTGGC 152368 Query 171377 ACTTAACCTCAGAGCATACGATTTTGTATCTCAAGAGATAAGAGCAGCAGAAGACCCAGA 171436 | ||||| | || | || || | || || || || ||||| ||||| || || Sbjct 152367 TTTGAACCTACGTGCTTGTGACTTCATTTCCCAGGAAATCCATGCAGCGGAAGATCCTGA 152308 Query 171437 GTTCGAGACTTTCTACACTAAGAATATACTTCTTAATGAAGG 171478 || ||||||||||| | || ||||| || |||| |||| Sbjct 152307 ATTTGAGACTTTCTATGCCAAAAATAT--TTTTTAAACAAGG 152268 >seq12503 Length=143431 Score = 91.5 bits (100), Expect = 2e-13 Identities = 106/143 (74%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 170529 TTTGATGTTCTTGACGACTGGTTAAAGAGAGATCGTTTTGTATTCATAGGATGGTCTGGT 170588 |||||| || | |||||||||||| || || ||||| || || ||||||| ||| || Sbjct 88079 TTTGATATTATGGACGACTGGTTACGAAGGGACCGTTTCGTTTTTATAGGATTGTCCGGC 88138 Query 170589 CTTTTACTTCTGCCTTGTGCATACCTATCAATCGGTGGTTGGTTCTTAGGGACTACCTTC 170648 || || || | |||||||| || | | | || |||||||| |||||||||| || Sbjct 88139 CTATTGCTCTTTCCTTGTGCTTATTTCGCTTTAGGGGGTTGGTTTATAGGGACTACTTTT 88198 Query 170649 GTTACATCATGGTATACACATGG 170671 | || || |||||||| ||||| Sbjct 88199 ATAACTTCTTGGTATACCCATGG 88221 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 579086560570240