Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dichanthelium_20oligosanthes_20[genbank_20GCA_5F001633215.2_202016- 09-29] 17,436 sequences; 589,166,415 total letters Query= NC_015281.1 Length=179563 Score E Sequences producing significant alignments: (Bits) Value seq16913 259 6e-64 seq10113 232 8e-56 seq12982 181 1e-40 seq666 145 9e-30 seq12572 116 4e-21 seq8160 86.0 7e-12 >seq16913 Length=117496 Score = 259 bits (286), Expect = 6e-64 Identities = 525/775 (68%), Gaps = 26/775 (3%) Strand=Plus/Minus Query 167863 TTCTGCGAGTGGGTAAC-ATCAACTAACAACCGCCTCTATGTCGGTTGGTTCGGCGTACT 167921 |||||| | ||| |||| | || | || ||||| || || |||| |||||||| || | Sbjct 95221 TTCTGCAACTGGATAACTAGCACCGAA-AACCGTCTTTACATCGGATGGTTCGGTGTTTT 95163 Query 167922 GATGATTCCAACTCTGTTGGCAGCAACTATCTGTTTCATCGTCGCCTTCGTCGCTGCTCC 167981 |||||| | || | || | |||||| | || || |||||||| |||||||||| Sbjct 95162 GATGATCCGTACCTTATTAACCGCAACTTCCATATTTATTATCGCCTTCATCGCTGCTCC 95103 Query 167982 CCCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTATGGTAACAA 168041 || || || || || || || ||||| || || || |||| | | ||| | ||||| Sbjct 95102 TCCGGTAGATATTGATGGTATTCGTGAGCCTGTTTCTAGTTCTTTACTTTATAGAAACAA 95043 Query 168042 CATCATCTCTGGTGC------------AG------TTGTCCCTTCTTCTAATGCTATTGG 168083 || || |||||||| || || | ||| ||||| || || || Sbjct 95042 TATTATATCTGGTGCTATTATTCCTGCAGAAACTATTATTCCTACTTCTGTGGCAATCGG 94983 Query 168084 ACTTCACTTCTATCCCATCTGGGAAGCAGCATCACTCGATGAGTGGTTGTATAACGGTGG 168143 | | || || || || || ||| || | ||||| | ||||| ||||| || || |||| Sbjct 94982 ATTGCATTTTTACCCAATTTGGAAAACTGCATCTGTTGATGAATGGTTATAAAATTGTGG 94923 Query 168144 TCCTTTCCAACTAGTAGTCTTTCACTTCCTCATCGGTATCTATGCATACATGGGACGTGA 168203 ||||| | ||| | || | | || | | ||| | | || ||||| ||||| Sbjct 94922 TCCTTCTGAGCTAATTGTTCTATATTTTTTACTTGGTGTAGCTTGTTATATGGGTCGTGA 94863 Query 168204 ATGGG-AACTTTCATATCGTTTAGGTATGCGTCCATGGATCTGTGTTGCATACTCTGCAC 168262 |||| ||||| | ||| | |||| ||| || ||||| | ||||||| || || | Sbjct 94862 GTGGGGAACTTAGTTTCCGTCTGGGTACGCGCCCTTGGATTGCTATTGCATATTCAGCTC 94803 Query 168263 CAGTCGCTGCAGCGAGTGCAGTATTCCTAGTGTATCCTTTCGGTCAAGGTAGTTTCTCTG 168322 | | || || || ||||| || ||| | || || || | |||||||| |||||||| | Sbjct 94802 CTTT-GCAGCTGCTAGTGCTGTTTTCTTGGTTTACTCTATTGGTCAAGGGAGTTTCTCCG 94744 Query 168323 ATGCAATGCCACTCGGAATCTCAGGAACATTCAACTACATGTTGGTCTTCCAAGCTGAGC 168382 ||| |||| | ||||| || || | ||||||| || | || ||||| | |||| Sbjct 94743 ATGGTGTGCCTTTAGGAATATCTGGTAT-TTCAACTTTATAATTGTATTCCAGGTAGAGC 94685 Query 168383 ACAATATTCTCATGCATCCCTTCCATATGCTCGGCGTTGCTGGGGTATTTGGTGGCAGTT 168442 |||| || || |||||| | || || ||| | || | ||||| ||||| || || || Sbjct 94684 ACAACATCCTTATGCATTCATTTCACATGTTAGGTATAGCTGGTGTATTCGGCGG---TT 94628 Query 168443 TGTTTAGTGCTATGCACGGAAGTTTGGTTACTTCTTCTCTCGTTAGAGAGACGACTGAAA 168502 || || | |||||| || |||| || ||| | | | || || || ||||||| Sbjct 94627 CTTTCAGCGTTATGCATGGTTCCTTGGCAACCTCTAGTTTGATCAGGGAAACCACTGAAA 94568 Query 168503 CCGAATCCCAAAACTACGGTTACAAGTTCGGACAAGAAGAAGAAACATACAACATCGTAG 168562 || || || | |||||||| || || ||||||||||| |||| || ||||| | Sbjct 94567 ATGAGTCTGCTAATGAAGGTTACAAATTTGGTCAAGAAGAAGAGACATGTAATATCGTGG 94508 Query 168563 CCGCTCATGGTTACTTCGGTCGTTTGATCTTCCAATACGCTTCATTCAACAACTC 168617 | ||||| ||||| || ||||| || ||||| ||||| ||| | ||||||||||| Sbjct 94507 CTGCTCACGGTTATTTTGGTCGATTAATCTTTCAATATGCTACTTTCAACAACTC 94453 >seq10113 Length=56568 Score = 232 bits (256), Expect = 8e-56 Identities = 471/694 (68%), Gaps = 9/694 (1%) Strand=Plus/Minus Query 169337 GACCGCTTTGTATTCATTGGTTGGTCTGGTCTACTTCTTCTTCCCACTGCCTATCTTGCT 169396 |||| ||||| || | | |||||||| ||| | || |||| ||| ||| ||||| Sbjct 48539 GACCATTTTGTTTTTGTATGATGGTCTGGCCTATTGCTCTTTCCTTGTGCTTATTTTGCT 48480 Query 169397 ATTGGAGGGTGGCTCACTGGTACAGCGTTTGTTACTTCCTGGTACACCCACGGACTCGCT 169456 | || || ||| | || || || | ||||| ||||| ||||| ||||| ||| | | | Sbjct 48479 TTAGGGGGTTGGTTTACAGGRACTACTTTTGTAACTTCTTGGTATACCCATGGATTGGAT 48420 Query 169457 TCCAGTTACT---TAGAAGGCGCTAACTTCCTCACTGCTGCTGTCAGTACACCTGCTGAC 169513 |||| || | ||||| || ||| | || || || || | || |||||| | Sbjct 48419 ---AGTTCCTATTTGGAAGGATGCAATTTCTTAACAGCGGCGGTTATCACTCCTGCTAAT 48363 Query 169514 GCTATGGGACACTCACTGCTCTTGCTATGGGGTCCAGAAGCACAAGGCGATTTCGTTCGC 169573 | | | |||||| || | | |||||||| | |||| ||| || ||||| ||| Sbjct 48362 AGTTTAGCACACTCTTTGTTACTACTATGGGGCCTGGAAGAACAGGGGGATTTTACTCGT 48303 Query 169574 TGGTGTCAATTGGGTGGTCTCTGGAACTTTGTAGCACTTCATGGTGCATTTGCATTGATT 169633 || |||||||| |||||||| |||| ||||| || || ||||| || ||| | || Sbjct 48302 TGATGTCAATTAGGTGGTCTGTGGACTTTTGTCGCTCTCCATGGGGCTTTTATGCTAATA 48243 Query 169634 GGTTTCATGCTTAGGCAGTTTGAATTGGCAC-GTCTTATTGGCATCCGTCCTTATAATGC 169692 ||||||||| | | || |||||| || | |||| || | || ||||||||||| Sbjct 48242 GGTTTCATGTTACGTCAATTTGAACATGCTCAGTCTG-TTCAATTGCGGCCTTATAATGC 48184 Query 169693 TATTGCATTCTCTGGTCCTATTGCTG-TATTTGTCAGTGTCTTTCTTATCTACCCACTTG 169751 ||| |||||||| |||| | || | ||||| ||| || ||| | || ||| | | Sbjct 48183 AATTTCATTCTCTAGTCCAACCATTGTTTTTTGTTTTTGTATTCCTTGTTTATCCAATGG 48124 Query 169752 GACAGTCCTCATGGTTCTTTGCTCCCTCCTTTGGAGTATCAGCAATCTTCAGGTTCCTGT 169811 |||| || | |||||||| | ||||| || || || || ||| | Sbjct 48123 GACAATCTGGTTAGTTCTTTGTGCTGAGTTTTGGCATAGAAGTTATATTTCAATTCATCC 48064 Query 169812 TGTTCCTGCAAGGATTCCACAACTGGACGTTGAATCCATTCCACATGATGGGTGTAGCAG 169871 | ||| | |||||||| | || |||||||| || ||||| || |||||||| || || | Sbjct 48063 TTTTCTTCCAAGGATTTCCTAATTGGACGTTAAACCCATTTCATATGATGGGGGTTGCCG 48004 Query 169872 GAATCTTGGGCGGAGCATTGCTTTCTGCTATCCATGGTGTTACAGTAGAGAACACATTGT 169931 || | || |||| ||| |||| | |||||||||| | ||| |||| ||||| | | Sbjct 48003 GAGTATTAGGCGCAGCTCTGCTATGCTCTATCCATGGGGCTACCATAGAAAACACTCTAT 47944 Query 169932 ATGAAGACGGTGAGCAGGCAAATACTTTCAAGGCGTTTGATTCGACACAGGAAGAAGAGA 169991 |||| | ||| |||||||| ||| | || | | | | || || | ||||| | Sbjct 47943 TCAAAGATGATGATGGTGCAAATACCTTCTATGCTTGTAACGCAACTCAAGCTGAAGAAA 47884 Query 169992 CTTATTCTATGGTCACTGCAAACCGCTTCTGGTC 170025 ||||||| ||| ||||| | ||| |||| ||||| Sbjct 47883 CTTATTCAATGATCACTACTAACAGCTTTTGGTC 47850 Score = 159 bits (176), Expect = 4e-34 Identities = 207/284 (73%), Gaps = 3/284 (1%) Strand=Plus/Minus Query 170021 TGGTCGCAGATCTTCGGTATTGCGTTTTCTAACAAGCGTTGGCTTCATTTTTTCATGTTG 170080 ||||| || || || ||| || | ||||| || || |||||| | ||||| || ||| | Sbjct 1009 TGGTCCCAAATATTTGGTGTTTCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGCTA 950 Query 170081 TTTGTGCCTGTTATGGGTCTTTGGACATCCTCTATTGGCATTATTGGCCTTGCTCTCAAT 170140 |||| | ||| || || | | || | |||||||| | ||| ||| ||||| || Sbjct 949 CTTGTACTTGTAATCAGTTTATAGATGACTGCTATTGGC-TAGTTGCCCTGGCTCTGAAC 891 Query 170141 CTTCGTGCTTACGATTTCGTGAGTCAGGAGATCAGAGCAGCAGAAGATCCAGAATTTGAG 170200 || |||| || |||||| | ||| | ||| | |||||||||||||| ||||||||| Sbjct 890 CTATGTGCCTATGATTTCTTCC--CAGAAAATCCGTGCAGCAGAAGATCCTGAATTTGAG 833 Query 170201 ACCTTCTACACCAAAAACATCCTATTGAATGAAGGACTTCGTGCATGGTTGGCACCTGCT 170260 || |||||||||||| | || || || ||||| || ||| ||| ||| ||||| || Sbjct 832 ACTTTCTACACCAAATATATTCTTTTAAATGAGGGTATTCATGCGTGGATGGCAGCTCAG 773 Query 170261 GATCAACCACATGAAAACTTCATCTTCCCAGAAGAAGTTCTTCC 170304 ||||| || |||||||| | || ||||| || || ||||| || Sbjct 772 GATCAGCCTCATGAAAATCTTATATTCCCTGAGGAGGTTCTACC 729 >seq12982 Length=32303 Score = 181 bits (200), Expect = 1e-40 Identities = 339/493 (69%), Gaps = 4/493 (1%) Strand=Plus/Plus Query 167863 TTCTGCGAGTGGGTAAC-ATCAACTAACAACCGCCTCTATGTCGGTTGGTTCGGCGTACT 167921 |||||| | | | |||| | || | |||| ||| || || |||| ||||| || || | Sbjct 473 TTCTGCAACTAGATAACTAGCACCGAACA-CCGTCTTTACATCGGATGGTTTGGTGTTTT 531 Query 167922 GATGATTCCAACTCTGTTGGCAGCAACTATCTGTT-TCATCGTCGCCTTCGTCGCTGCTC 167980 |||||| || || | ||| | |||||| || || | || || ||||| ||||||||| Sbjct 532 GATGATCCCTACCTTATTGACCGCAACT-TCCGTACTTATTATCACCTTCATCGCTGCTC 590 Query 167981 CCCCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTATGGTAACA 168040 | || || || || || || || ||||| || || ||||||| | || ||||| |||| Sbjct 591 CTCCAGTAGATATTGATGGTATTCGTGAGCCTGTTTCTGGTTCTTTAATTTATGGAAACA 650 Query 168041 ACATCATCTCTGGTGCAGTTGTCCCTTCTTCTAATGCTATTGGACTTCACTTCTATCCCA 168100 || ||||||||||| || | ||| ||| | | || ||| | || || || || | Sbjct 651 GTATTATCTCTGGTGCTATTATTCCTACTTATGTGACGATCGGATTGCATTTTTACCCAA 710 Query 168101 TCTGGGAAGCAGCATCACTCGATGAGTGGTTGTATAACGGTGGTCCTTTCCAACTAGTAG 168160 | ||| |||| ||||| | ||||| ||||| || || || ||||||| | ||| | | Sbjct 711 TTTGGAAAGCTGCATCCGTTGATGAATGGTTATACAATGGCGGTCCTTATGACCTAATTG 770 Query 168161 TCTTTCACTTCCTCATCGGTATCTATGCATACATGGGACGTGAATGGGAACTTTCATATC 168220 | | || ||| | | ||| | | || |||| ||||| ||||||||| | | Sbjct 771 TTCTACATTTCTTACTTGGTGTAGCTTGTTATATGGATCGTGACTGGGAACTTAGTTTCC 830 Query 168221 GTTTAGGTATGCGTCCATGGATCTGTGTTGCATACTCTGCACCAGTCGCTGCAGCGAGTG 168280 | | |||||||| | ||||| ||||||||| || || || || || | || | || Sbjct 831 ATCTGGGTATGCGCCTTTGGATTGTTGTTGCATATTCAGCTCCTGTTGCAGTTGCTACTG 890 Query 168281 CAGTATTCCTAGTGTATCCTTTCGGTCAAGGTAGTTTCTCTGATGCAATGCCACTCGGAA 168340 | | ||| | | || ||| | ||||||| ||||| ||||||| ||||| | |||| Sbjct 891 CTATTTTCTTGATTTACCCTATTGGTCAAGAAAGTTTTTCTGATGGTATGCCTTTAGGAA 950 Query 168341 TCTCAGGAACATT 168353 | || || || || Sbjct 951 TATCTGGTACTTT 963 >seq666 Length=229199 Score = 145 bits (160), Expect = 9e-30 Identities = 176/237 (74%), Gaps = 2/237 (1%) Strand=Plus/Minus Query 169985 GAAGAGACTTATTCTATGGTCACTGCAAACCGCTTCTGGTCGCAGATCTTCGGTATTGCG 170044 ||||| |||||||| ||||| ||||| | ||||| ||||| || ||||| ||| |||| Sbjct 152516 GAAGAAACTTATTCAATGGTTACTGCTTATCGCTTTTGGTCTCAAATCTTTGGTGTTGC- 152458 Query 170045 TTTTCT-AACAAGCGTTGGCTTCATTTTTTCATGTTGTTTGTGCCTGTTATGGGTCTTTG 170103 |||||| || || | ||| | ||||| || ||||| ||||| || || | ||| | || Sbjct 152457 TTTTCTCAATAAAGGCTGGTTACATTTCTTTATGTTATTTGTACCCGTCACCGGTTTATG 152398 Query 170104 GACATCCTCTATTGGCATTATTGGCCTTGCTCTCAATCTTCGTGCTTACGATTTCGTGAG 170163 || |||||||| | ||||||| ||| | || || ||||||| || ||| | Sbjct 152397 GATGAGTGCTATTGGCGTAGTTGGCCTGGCTTTGAACCTACGTGCTTGTGACTTCATTTC 152338 Query 170164 TCAGGAGATCAGAGCAGCAGAAGATCCAGAATTTGAGACCTTCTACACCAAAAACAT 170220 ||||| ||| ||||| |||||||| ||||||||||| ||||| ||||||| || Sbjct 152337 CCAGGAAATCCATGCAGCGGAAGATCCTGAATTTGAGACTTTCTATGCCAAAAATAT 152281 >seq12572 Length=34890 Score = 116 bits (128), Expect = 4e-21 Identities = 216/317 (68%), Gaps = 0/317 (0%) Strand=Plus/Minus Query 169547 CCAGAAGCACAAGGCGATTTCGTTCGCTGGTGTCAATTGGGTGGTCTCTGGAACTTTGTA 169606 || |||||||| || ||||| ||| ||||||||||| | | | |||| ||||| Sbjct 27009 CCGGAAGCACAGGGGGATTTTACTCGTTGGTGTCAATTTTTTTTTTTGTGGACTTTTGTC 26950 Query 169607 GCACTTCATGGTGCATTTGCATTGATTGGTTTCATGCTTAGGCAGTTTGAATTGGCACGT 169666 || || ||||| || |||||| | ||| ||| ||| | | || |||||| | || || Sbjct 26949 GCTCTCCATGGGGCTTTTGCACTAATTTTTTTTATGTTACGTCAATTTGAACTTGCTCGG 26890 Query 169667 CTTATTGGCATCCGTCCTTATAATGCTATTGCATTCTCTGGTCCTATTGCTGTATTTGTC 169726 | || | | || |||||| ||| ||||||||||||| | ||||| ||||| Sbjct 26889 TCTGTTCAATTGTTTTTTTTTAATGCAATTTCATTCTCTGGTCCGTTCGCTGTTTTTGTT 26830 Query 169727 AGTGTCTTTCTTATCTACCCACTTGGACAGTCCTCATGGTTCTTTGCTCCCTCCTTTGGA 169786 | | || ||||| || ||||| ||||| || |||||||||| | | ||||| Sbjct 26829 TTTTTTTTCCTTATTTATCCACTGGGACAATCTGGTTGGTTCTTTGTTTTTTTTTTTGGC 26770 Query 169787 GTATCAGCAATCTTCAGGTTCCTGTTGTTCCTGCAAGGATTCCACAACTGGACGTTGAAT 169846 ||| |||| || || | ||| | | ||| | || || || ||||| || || Sbjct 26769 GTAGCAGCTATATTTCGATTCATCCTTTTCTTCTTTTTTTTTCATAATTGGACATTAAAC 26710 Query 169847 CCATTCCACATGATGGG 169863 ||||| || |||||||| Sbjct 26709 CCATTTCATATGATGGG 26693 >seq8160 Length=957 Score = 86.0 bits (94), Expect = 7e-12 Identities = 86/112 (77%), Gaps = 0/112 (0%) Strand=Plus/Plus Query 168520 GGTTACAAGTTCGGACAAGAAGAAGAAACATACAACATCGTAGCCGCTCATGGTTACTTC 168579 |||||||| || | |||||||||| || || || || || || ||||||| ||| || Sbjct 347 GGTTACAAATTTGATTAAGAAGAAGAGACCTATAATATTGTGGCTGCTCATGATTATTTT 406 Query 168580 GGTCGTTTGATCTTCCAATACGCTTCATTCAACAACTCCCGCTCCTTGCACT 168631 ||||| || ||||||||||| || ||||||||||| || || || |||| Sbjct 407 GGTCGATTAATCTTCCAATATCCTAGTTTCAACAACTCTCGTTCTTTACACT 458 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 574348393478880