Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dichanthelium_20oligosanthes_20[genbank_20GCA_5F001633215.2_202016- 09-29] 17,436 sequences; 589,166,415 total letters Query= NC_015282.1 Length=174079 Score E Sequences producing significant alignments: (Bits) Value seq16913 331 1e-85 seq10113 277 2e-69 seq12982 210 2e-49 seq666 165 9e-36 seq12572 154 2e-32 seq8160 100 3e-16 seq12273 86.0 7e-12 seq12503 84.2 2e-11 >seq16913 Length=117496 Score = 331 bits (366), Expect = 1e-85 Identities = 539/774 (70%), Gaps = 24/774 (3%) Strand=Plus/Minus Query 163785 TTCTGCGAATGGGTGACTTCCACAAACAACCGCCTCTATGTTGGTTGGTTCGGCGTTCTG 163844 |||||| | ||| | ||| ||| | ||||| || || | || |||||||| ||| || Sbjct 95221 TTCTGCAACTGGATAACTAGCACCGAAAACCGTCTTTACATCGGATGGTTCGGTGTTTTG 95162 Query 163845 ATGATCCCTACGCTGCTTGCAGCAACCATCTGTTTCATCGTCGCCTTCGTCGCTGCTCCC 163904 ||||||| ||| | | | ||||| | || || |||||||| |||||||||| Sbjct 95161 ATGATCCGTACCTTATTAACCGCAACTTCCATATTTATTATCGCCTTCATCGCTGCTCCT 95102 Query 163905 CCTGTGGACATCGATGGTATTCGTGAACCTGTTGCAGGTTCGCTCATGTATGGTAACAAC 163964 || || || || |||||||||||||| |||||| | |||| | | ||| | ||||| Sbjct 95101 CCGGTAGATATTGATGGTATTCGTGAGCCTGTTTCTAGTTCTTTACTTTATAGAAACAAT 95042 Query 163965 ATCATCTCTGGTGCAGTTGTTCCCTCG-----------TCCAAT-------GCAATTGGT 164006 || || |||||||| || |||| | ||| | ||||| || Sbjct 95041 ATTATATCTGGTGCTATTATTCCTGCAGAAACTATTATTCCTACTTCTGTGGCAATCGGA 94982 Query 164007 CTTCACTTCTACCCCATTTGGGAAGCCGCATCCCTTGATGAATGGCTTTACAACGGTGGT 164066 | || || ||||| |||||| || | ||||| ||||||||||| | || || ||||| Sbjct 94981 TTGCATTTTTACCCAATTTGGAAAACTGCATCTGTTGATGAATGGTTATAAAATTGTGGT 94922 Query 164067 CCTTTCCAACTTGTCGTCTTCCACTTCCTGATCGGTATCTATGCATACATGGGTCGTGAG 164126 |||| | || | || | | || | | ||| | | || |||||||||||| Sbjct 94921 CCTTCTGAGCTAATTGTTCTATATTTTTTACTTGGTGTAGCTTGTTATATGGGTCGTGAG 94862 Query 164127 TGGG-AACTGTCTTACCGTCTTGGTATGCGTCCTTGGATTTGTGTTGCTTACTCTGCACC 164185 |||| |||| || |||||| |||| ||| ||||||||| | |||| || || || || Sbjct 94861 TGGGGAACTTAGTTTCCGTCTGGGTACGCGCCCTTGGATTGCTATTGCATATTCAGCTCC 94802 Query 164186 CGTTGCAGCAGCATCCGCAGTCTTCCTGGTCTATCCTTTCGGTCAAGGTTCGTTCTCTGA 164245 ||||||| || || || ||| |||| || || | |||||||| ||||| || Sbjct 94801 T-TTGCAGCTGCTAGTGCTGTTTTCTTGGTTTACTCTATTGGTCAAGGGAGTTTCTCCGA 94743 Query 164246 CGCAATGCCCCTGGGCATCTCTGGCACCTTCAACTACATGTTGGTGTTCCAAGCAGAGCA 164305 | |||| | || || ||||| | ||||||| || | || ||||| | |||||| Sbjct 94742 TGGTGTGCCTTTAGGAATATCTGGTAT-TTCAACTTTATAATTGTATTCCAGGTAGAGCA 94684 Query 164306 CAACATCCTGATGCACCCCTTCCATATGCTCGGCGTTGCTGGCGTATTTGGCGGTTCTCT 164365 ||||||||| ||||| | || || ||| | || | ||||| ||||| ||||||||| Sbjct 94683 CAACATCCTTATGCATTCATTTCACATGTTAGGTATAGCTGGTGTATTCGGCGGTTCT-- 94626 Query 164366 GTTCAGTGCAATGCACGGTTCTCTGGTTACTTCTTCGCTGGTTCGTGAAACCACCGAAAC 164425 ||||| | ||||| ||||| ||| || ||| || | | |||||||| |||| Sbjct 94625 -TTCAGCGTTATGCATGGTTCCTTGGCAACCTCTAGTTTGATCAGGGAAACCACTGAAAA 94567 Query 164426 TGAGTCCCAGAACTATGGTTACAAGTTTGGTCAAGAAGAAGAAACATACAACATTGTTGC 164485 |||||| || | |||||||| ||||||||||||||||| |||| || || || || Sbjct 94566 TGAGTCTGCTAATGAAGGTTACAAATTTGGTCAAGAAGAAGAGACATGTAATATCGTGGC 94507 Query 164486 CGCTCACGGTTACTTTGGTCGTCTGATCTTCCAATACGCTTCATTCAACAACTC 164539 ||||||||||| |||||||| | ||||| ||||| ||| | ||||||||||| Sbjct 94506 TGCTCACGGTTATTTTGGTCGATTAATCTTTCAATATGCTACTTTCAACAACTC 94453 >seq10113 Length=56568 Score = 277 bits (306), Expect = 2e-69 Identities = 481/690 (70%), Gaps = 9/690 (1%) Strand=Plus/Minus Query 165229 TTTCGTTTTTGTTGGTTGGTCTGGACTTCTTCTTTTTCCCACTGCTTATCTTGCTATTGG 165288 ||| |||||||| | |||||||| || | || ||||| ||||||| ||||| | || Sbjct 48534 TTTTGTTTTTGTATGATGGTCTGGCCTATTGCTCTTTCCTTGTGCTTATTTTGCTTTAGG 48475 Query 165289 CGGTTGGCTTACTGGGACTACTTTCGCGACGAGTTGGTATACTCACGGGTTGGCAAGTTC 165348 |||||| |||| || |||||||| | || ||||||||| || || |||| ||||| Sbjct 48474 GGGTTGGTTTACAGGRACTACTTTTGTAACTTCTTGGTATACCCATGGATTGGATAGTTC 48415 Query 165349 CTATCTGGAGGG-TGCAAACTTTCTTA-CTGCGGCAGTTTCTACTCCAGCAGACGCTATG 165406 |||| |||| || ||||| ||||||| | ||||| ||| ||||| || | | | Sbjct 48414 CTATTTGGAAGGATGCAA--TTTCTTAACAGCGGCGGTTATCACTCCTGCTAATAGTTTA 48357 Query 165407 GGTCATTCTCTTCTGCTTCTCTGGGGTCCTGAGGCTCAAGGGGATTTCGTCAGGTGGATC 165466 | || ||| | | || || ||||| | || | || |||||||| | || ||| Sbjct 48356 GCACACTCTTTGTTACTACTATGGGGCCTGGAAGAACAGGGGGATTTTA-CTCGTTGATG 48298 Query 165467 -CAACTTGGGGGACTCTGGGCTTTTGTGGCGCTCCACGGGGCTTTCGCTCTAATTGGTTT 165525 ||| | || || || ||| ||||||| || ||||| |||||||| ||||| ||||| Sbjct 48297 TCAATTAGGTGGTCTGTGGACTTTTGTCGCTCTCCATGGGGCTTTTATGCTAATAGGTTT 48238 Query 165526 CATGCTTCGTCAGTTTGAATTAGCAC-GTCTCATCGGTATCCGTCCCTACAATGCTATTG 165584 |||| | ||||| |||||| || | |||| || | | || || || ||||| ||| Sbjct 48237 CATGTTACGTCAATTTGAACATGCTCAGTCTGTTCAAT-TGCGGCCTTATAATGCAATTT 48179 Query 165585 CGTTCTCTGGTCCTATCGCTGTTTTT-GTTAGCGTCTTTCTCATCTACCCTCTGGGTCAA 165643 | |||||| |||| | | ||||||| ||| || || || | || || |||| ||| Sbjct 48178 CATTCTCTAGTCCAACCATTGTTTTTTGTTTTTGTATTCCTTGTTTATCCAATGGGACAA 48119 Query 165644 TCGAGTTGGTTTTTCGCTCCATCTTTCGGGGTCGCAGCAATCTTCAGGTTCCTTCTCTTC 165703 || ||| ||| || | | ||| || | | || || || ||| | || ||| Sbjct 48118 TCTGGTTAGTTCTTTGTGCTGAGTTTTGGCATAGAAGTTATATTTCAATTCATCCTTTTC 48059 Query 165704 CTACAAGGATTCCATAACTGGACCTTGAATCCCTTTCATATGATGGGTGTTGCAGGTATC 165763 | |||||||| | ||| ||||| || || || |||||||||||||| ||||| || | Sbjct 48058 TTCCAAGGATTTCCTAATTGGACGTTAAACCCATTTCATATGATGGGGGTTGCCGGAGTA 47999 Query 165764 CTGGGTGGTGCATTGCTTTCTGCCATCCATGGTGTTACAGTAGAGAATACTCTGTATCAA 165823 | || | || |||| | | |||||||| | ||| |||| || ||||| | || Sbjct 47998 TTAGGCGCAGCTCTGCTATGCTCTATCCATGGGGCTACCATAGAAAACACTCTATTCAAA 47939 Query 165824 GATGGTGACGATGCAAATACTTTCAAGGCATTTGACTCTACTCAAGAGGAAGAAACCTAC 165883 |||| ||| | ||||||||| ||| | || | | || | ||||||| |||||||| || Sbjct 47938 GATGATGATGGTGCAAATACCTTCTATGCTTGTAACGCAACTCAAGCTGAAGAAACTTAT 47879 Query 165884 TCAATGGTTACTGCAAACCGTTTCTGGTCT 165913 |||||| | ||| | ||| | || |||||| Sbjct 47878 TCAATGATCACTACTAACAGCTTTTGGTCT 47849 Score = 145 bits (160), Expect = 8e-30 Identities = 205/284 (72%), Gaps = 3/284 (1%) Strand=Plus/Minus Query 165908 TGGTCTCAGATCTTCGGTATTGCGTTTAGTAATAAGAGGTGGTTGCATTTCTTTATGCTG 165967 ||||| || || || ||| || | ||| ||||| | ||||| |||||||||||||| Sbjct 1009 TGGTCCCAAATATTTGGTGTTTCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGCTA 950 Query 165968 TTTGTTCCTGTTATGGGTCTTTGGACAAGTTCCATCGGTATTATTGGTCTTGCTCTCAAC 166027 |||| | ||| || || | | || | | | || || | ||| || ||||| ||| Sbjct 949 CTTGTACTTGTAATCAGTTTATAGATGACTGCTATTGGC-TAGTTGCCCTGGCTCTGAAC 891 Query 166028 CTTCGTGCTTATGACTTTGTATCCCAAGAGATCAGAGCAGCAGAAGACCCAGAGTTTGAA 166087 || |||| ||||| ||| | ||||| | ||| | ||||||||||| || || ||||| Sbjct 890 CTATGTGCCTATGA-TTTCT-TCCCAGAAAATCCGTGCAGCAGAAGATCCTGAATTTGAG 833 Query 166088 ACCTTCTACACGAAAAACATTCTCTTGAATGAAGGTCTTCGTGCTTGGTTGGCACCAGTC 166147 || |||||||| ||| | ||||| || ||||| ||| ||| ||| ||| ||||| | Sbjct 832 ACTTTCTACACCAAATATATTCTTTTAAATGAGGGTATTCATGCGTGGATGGCAGCTCAG 773 Query 166148 GATCAACCGCATGAGAACTTTGTCTTCCCTGAAGAAGTTCTGCC 166191 ||||| || ||||| || || | |||||||| || ||||| || Sbjct 772 GATCAGCCTCATGAAAATCTTATATTCCCTGAGGAGGTTCTACC 729 >seq12982 Length=32303 Score = 210 bits (232), Expect = 2e-49 Identities = 348/496 (70%), Gaps = 10/496 (2%) Strand=Plus/Plus Query 163785 TTCTGCGAATGGGTGACTTCCACAAACAACCGCCTCTATGTTGGTTGGTTCGGCGTTCTG 163844 |||||| | | | | ||| ||| | |||| || || | || ||||| || ||| || Sbjct 473 TTCTGCAACTAGATAACTAGCACCGAACACCGTCTTTACATCGGATGGTTTGGTGTTTTG 532 Query 163845 ATGATCCCTACGCTGCTTG-CAGCAACCATCTGTT-TCATCGTCGCCTTCGTCGCTGCTC 163902 ||||||||||| || ||| | ||||| || || | || || ||||| ||||||||| Sbjct 533 ATGATCCCTAC-CTTATTGACCGCAACT-TCCGTACTTATTATCACCTTCATCGCTGCTC 590 Query 163903 CCCCTGTGGACATCGATGGTATTCGTGAACCTGTTGCAGGTTCGCTCATGTATGGTAACA 163962 | || || || || |||||||||||||| |||||| | ||||| | || ||||| |||| Sbjct 591 CTCCAGTAGATATTGATGGTATTCGTGAGCCTGTTTCTGGTTCTTTAATTTATGGAAACA 650 Query 163963 ACATCATCTCTGGTGCAGTTGTTCCCTCGTCCAATG---CAATTGGTCTTCACTTCTACC 164019 || ||||||||||| || |||| | | ||| | || || | || || |||| Sbjct 651 GTATTATCTCTGGTGCTATTATTCCTACTT---ATGTGACGATCGGATTGCATTTTTACC 707 Query 164020 CCATTTGGGAAGCCGCATCCCTTGATGAATGGCTTTACAACGGTGGTCCTTTCCAACTTG 164079 | |||||| |||| |||||| ||||||||||| | ||||| || ||||||| | || Sbjct 708 CAATTTGGAAAGCTGCATCCGTTGATGAATGGTTATACAATGGCGGTCCTTATGACCTAA 767 Query 164080 TCGTCTTCCACTTCCTGATCGGTATCTATGCATACATGGGTCGTGAGTGGGAACTGTCTT 164139 | || | || ||| | | ||| | | || |||| |||||| |||||||| || Sbjct 768 TTGTTCTACATTTCTTACTTGGTGTAGCTTGTTATATGGATCGTGACTGGGAACTTAGTT 827 Query 164140 ACCGTCTTGGTATGCGTCCTTGGATTTGTGTTGCTTACTCTGCACCCGTTGCAGCAGCAT 164199 || ||| |||||||| | ||||||| |||||| || || || || ||||||| || Sbjct 828 TCCATCTGGGTATGCGCCTTTGGATTGTTGTTGCATATTCAGCTCCTGTTGCAGTTGCTA 887 Query 164200 CCGCAGTCTTCCTGGTCTATCCTTTCGGTCAAGGTTCGTTCTCTGACGCAATGCCCCTGG 164259 | || | ||| || | || ||| | ||||||| || ||||| | ||||| | | Sbjct 888 CTGCTATTTTCTTGATTTACCCTATTGGTCAAGAAAGTTTTTCTGATGGTATGCCTTTAG 947 Query 164260 GCATCTCTGGCACCTT 164275 | || ||||| || || Sbjct 948 GAATATCTGGTACTTT 963 >seq666 Length=229199 Score = 165 bits (182), Expect = 9e-36 Identities = 184/246 (75%), Gaps = 0/246 (0%) Strand=Plus/Minus Query 165863 ACTCAAGAGGAAGAAACCTACTCAATGGTTACTGCAAACCGTTTCTGGTCTCAGATCTTC 165922 ||||||| |||||||| || |||||||||||||| | || || |||||||| ||||| Sbjct 152525 ACTCAAGCTGAAGAAACTTATTCAATGGTTACTGCTTATCGCTTTTGGTCTCAAATCTTT 152466 Query 165923 GGTATTGCGTTTAGTAATAAGAGGTGGTTGCATTTCTTTATGCTGTTTGTTCCTGTTATG 165982 ||| |||| ||| ||||| | ||||| |||||||||||| | ||||| || || | Sbjct 152465 GGTGTTGCTTTTCTCAATAAAGGCTGGTTACATTTCTTTATGTTATTTGTACCCGTCACC 152406 Query 165983 GGTCTTTGGACAAGTTCCATCGGTATTATTGGTCTTGCTCTCAACCTTCGTGCTTATGAC 166042 ||| | |||| ||| | || || | |||| || ||| | ||||| ||||||| |||| Sbjct 152405 GGTTTATGGATGAGTGCTATTGGCGTAGTTGGCCTGGCTTTGAACCTACGTGCTTGTGAC 152346 Query 166043 TTTGTATCCCAAGAGATCAGAGCAGCAGAAGACCCAGAGTTTGAAACCTTCTACACGAAA 166102 || | ||||| || ||| ||||| ||||| || || ||||| || ||||| | ||| Sbjct 152345 TTCATTTCCCAGGAAATCCATGCAGCGGAAGATCCTGAATTTGAGACTTTCTATGCCAAA 152286 Query 166103 AACATT 166108 || ||| Sbjct 152285 AATATT 152280 >seq12572 Length=34890 Score = 154 bits (170), Expect = 2e-32 Identities = 356/530 (67%), Gaps = 6/530 (1%) Strand=Plus/Minus Query 165224 GATCGTTTCGTTTTTGTTGGTTGGTCTGGACTTCTTCTTTTTCCCACTGCTTATCTTGCT 165283 || |||||||||||| || |||||| || || | || ||||| ||||||| | ||| Sbjct 27219 GACCGTTTCGTTTTTTTTTTTTGGTCCGGCCTATTGCTCTTTCCTTGTGCTTATTTCGCT 27160 Query 165284 ATTGGCGGTTGGCTTACTGGGACTACTTTCGCGACGAGTTGGTATACTCACGGGTTGGCA 165343 || |||| |||| ||||||||||| | || |||||||||| ||||| Sbjct 27159 TTTTTTTTTTGGTTTACAGGGACTACTTTTGTAACTTCTTGGTATACTTTTTTTTTGGCT 27100 Query 165344 AGTTCCTATCTGGAGGGT-GCAAACTTTCTTA-CTGCGGCAGTTTCTACTCCAGCAGACG 165401 ||||||||| |||| ||| |||| ||||||| | | |||| ||||| || | Sbjct 27099 AGTTCCTATTTGGAAGGTTGCAA--TTTCTTAACCGTTTTTTTTTCCACTCCTGCCAATA 27042 Query 165402 CTATGGGTCATTCTCTTCTGCTTCTCTGGGGTCCTGAGGCTCAAGGGGATTTCGTCAGGT 165461 | | | || ||| | | || | | || || || || |||||||| | | Sbjct 27041 GTTTAGCACACTCTTTGTTACTATTTTTTTTCCCGGAAGCACAGGGGGATTTTACTCGTT 26982 Query 165462 GGATCCAACTTGGGGGACTCTGGGCTTTTGTGGCGCTCCACGGGGCTTTCGCTCTAATTG 165521 || ||| || | ||| ||||||| || ||||| |||||||| || |||||| Sbjct 26981 GGTGTCAATTTTTTTTTTTGTGGACTTTTGTCGCTCTCCATGGGGCTTTTGCACTAATTT 26922 Query 165522 GTTTCATGCTTCGTCAGTTTGAATTAGCACG-TCTCATCGGTATCCGTCCCTACAATGCT 165580 ||| ||| | ||||| |||||| | || || ||| || | | | | ||||| Sbjct 26921 TTTTTATGTTACGTCAATTTGAACTTGCTCGGTCTGTTCAAT-TGTTTTTTTTTAATGCA 26863 Query 165581 ATTGCGTTCTCTGGTCCTATCGCTGTTTTTGTTAGCGTCTTTCTCATCTACCCTCTGGGT 165640 ||| | ||||||||||| |||||||||||||| | || || || || || ||||| Sbjct 26862 ATTTCATTCTCTGGTCCGTTCGCTGTTTTTGTTTTTTTTTTCCTTATTTATCCACTGGGA 26803 Query 165641 CAATCGAGTTGGTTTTTCGCTCCATCTTTCGGGGTCGCAGCAATCTTCAGGTTCCTTCTC 165700 ||||| ||||||| || | | | ||| || || ||||| || || | ||| | || Sbjct 26802 CAATCTGGTTGGTTCTTTGTTTTTTTTTTTGGCGTAGCAGCTATATTTCGATTCATCCTT 26743 Query 165701 TTCCTACAAGGATTCCATAACTGGACCTTGAATCCCTTTCATATGATGGG 165750 ||| | || ||||| ||||| || || || |||||||||||||| Sbjct 26742 TTCTTCTTTTTTTTTCATAATTGGACATTAAACCCATTTCATATGATGGG 26693 >seq8160 Length=957 Score = 100 bits (110), Expect = 3e-16 Identities = 102/133 (77%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 164421 GAAACTGAGTCCCAGAACTATGGTTACAAGTTTGGTCAAGAAGAAGAAACATACAACATT 164480 |||| |||||| || | |||||||| |||| | |||||||||| || || || ||| Sbjct 326 GAAAATGAGTCTGCTAATGAGGGTTACAAATTTGATTAAGAAGAAGAGACCTATAATATT 385 Query 164481 GTTGCCGCTCACGGTTACTTTGGTCGTCTGATCTTCCAATACGCTTCATTCAACAACTCC 164540 || || ||||| | ||| |||||||| | ||||||||||| || ||||||||||| Sbjct 386 GTGGCTGCTCATGATTATTTTGGTCGATTAATCTTCCAATATCCTAGTTTCAACAACTCT 445 Query 164541 CGTTCCTTGCACT 164553 ||||| || |||| Sbjct 446 CGTTCTTTACACT 458 >seq12273 Length=37008 Score = 86.0 bits (94), Expect = 7e-12 Identities = 76/95 (80%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 164542 GTTCCTTGCACTTCTTCCTTGCTGCATGGCCTGTTGTTGGCATCTGGTTCACCGCACTTG 164601 |||| || ||||||||| | ||||| |||||||| || || ||||||||||| || | | Sbjct 29536 GTTCTTTACACTTCTTCTTGGCTGCTTGGCCTGTAGTAGGGATCTGGTTCACTGCTTTAG 29477 Query 164602 GTGTTTCCACGATGGCATTCAACCTGAACGGTTTC 164636 || || || |||||||||||||| || |||||| Sbjct 29476 GTATTAGTACTATGGCATTCAACCTAAATGGTTTC 29442 >seq12503 Length=143431 Score = 84.2 bits (92), Expect = 2e-11 Identities = 106/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 165206 GATGACTGGCTTAAACGAGATCGTTTCGTTTTTGTTGGTTGGTCTGGACTTCTTCTTTTT 165265 || |||||| | | | || |||||||||||| | || | ||| || || | || ||| Sbjct 88091 GACGACTGGTTACGAAGGGACCGTTTCGTTTTTATAGGATTGTCCGGCCTATTGCTCTTT 88150 Query 165266 CCCACTGCTTATCTTGCTATTGGCGGTTGGCTTACTGGGACTACTTTCGCGACGAGTTGG 165325 || ||||||| | ||| | || |||||| ||| ||||||||||| || |||| Sbjct 88151 CCTTGTGCTTATTTCGCTTTAGGGGGTTGGTTTATAGGGACTACTTTTATAACTTCTTGG 88210 Query 165326 TATACTCACGGGTTGGCAAGTTCCTA 165351 ||||| || || ||||| |||||||| Sbjct 88211 TATACCCATGGATTGGCTAGTTCCTA 88236 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556803418239840