Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dichanthelium_20oligosanthes_20[genbank_20GCA_5F001633215.2_202016- 09-29] 17,436 sequences; 589,166,415 total letters Query= NC_015283.1 Length=176428 Score E Sequences producing significant alignments: (Bits) Value seq16913 309 3e-79 seq12982 163 3e-35 seq8160 105 8e-18 >seq16913 Length=117496 Score = 309 bits (342), Expect = 3e-79 Identities = 537/776 (69%), Gaps = 26/776 (3%) Strand=Plus/Minus Query 168491 TTCTGCGAATGGGTAACAAGCACTAACAACAGACTTTATGTTGGTTGGTTCGGTGTCTTA 168550 |||||| | ||| |||| ||||| | ||| | ||||| | || ||||||||||| || Sbjct 95221 TTCTGCAACTGGATAACTAGCACCGAAAACCGTCTTTACATCGGATGGTTCGGTGTTTTG 95162 Query 168551 ATGATCCCATGTTTATTAACAGCAGCAGC-ATGTTTCATTGTTGCATTTATTGCTGCACC 168609 ||||||| |||||||| ||| | | || ||| ||| | || || || ||||| || Sbjct 95161 ATGATCCGTACCTTATTAACCGCAACTTCCATATTT-ATTATCGCCTTCATCGCTGCTCC 95103 Query 168610 ACCTGTCGATATCGACGGAATCAGAGAACCTGTAGCAGGTGCTCTAATGTATGGAAACAA 168669 || || ||||| || || || | || ||||| | || || || | ||| ||||||| Sbjct 95102 TCCGGTAGATATTGATGGTATTCGTGAGCCTGTTTCTAGTTCTTTACTTTATAGAAACAA 95043 Query 168670 CATCATCTCAGGTGCAGTTGTTCCATC-----------TTCAAAC-------GCAATCGG 168711 || || || ||||| || |||| | ||| || |||||||| Sbjct 95042 TATTATATCTGGTGCTATTATTCCTGCAGAAACTATTATTCCTACTTCTGTGGCAATCGG 94983 Query 168712 TCTACACTTCTACCCAATTTGGGAAGCAGCTACAATCGATGAGTGGTTATATAATGGTGG 168771 | || || |||||||||||| || | || | | ||||| |||||||| ||| |||| Sbjct 94982 ATTGCATTTTTACCCAATTTGGAAAACTGCATCTGTTGATGAATGGTTATAAAATTGTGG 94923 Query 168772 TCCTTACCAGTTGGTAATCTTCCACTTCCTAATCGGAATCTCTGCCTACATGGGTAGACA 168831 ||||| || | | | | | || || | || | || || |||||| | | Sbjct 94922 TCCTTCTGAGCTAATTGTTCTATATTTTTTACTTGGTGTAGCTTGTTATATGGGTCGTGA 94863 Query 168832 GTGGG-AATTATCATACAGACTAGGTATGAGACCTTGGATCTGTGTTGCTTATTCAGCAC 168890 ||||| || | | | | || |||| | | |||||||| | |||| |||||||| | Sbjct 94862 GTGGGGAACTTAGTTTCCGTCTGGGTACGCGCCCTTGGATTGCTATTGCATATTCAGCTC 94803 Query 168891 CAGTATCTGCAGCATTTGCAGTATTCCTTGTATACCCATTTGGTCAGGGTTCTTTCTCTG 168950 | | | || || ||| || ||| | || ||| | ||||||| || |||||| | Sbjct 94802 CTTTG-CAGCTGCTAGTGCTGTTTTCTTGGTTTACTCTATTGGTCAAGGGAGTTTCTCCG 94744 Query 168951 ATGGTATGCCTCTAGGAATTTCTGGAACATTCAACTTCATGTTCGTATTCCAAGCAGAGC 169010 ||||| ||||| ||||||| ||||| | |||||||| || | |||||||| | ||||| Sbjct 94743 ATGGTGTGCCTTTAGGAATATCTGGTAT-TTCAACTTTATAATTGTATTCCAGGTAGAGC 94685 Query 169011 ACAACATTCTTATGCATCCCTTCCATATGGCAGGAGTAGCAGGTATGTTCGGTGGATCTC 169070 ||||||| ||||||||| | || || ||| ||| |||| ||| | ||||| || ||| Sbjct 94684 ACAACATCCTTATGCATTCATTTCACATGTTAGGTATAGCTGGTGTATTCGGCGGTTCT- 94626 Query 169071 TATTCTCCGCAATGCATGGTTCACTTGTAACATCTTCTCTAATCAGAGAGACTACTGAGG 169130 ||| || ||||||||||| | | ||| ||| | | ||||| || || ||||| Sbjct 94625 --TTCAGCGTTATGCATGGTTCCTTGGCAACCTCTAGTTTGATCAGGGAAACCACTGAAA 94568 Query 169131 AAGAATCTCAGAACTATGGTTACAAGTTCGGTCAAGAAGAAGAAACCTATAATATTGTTG 169190 | || ||| || | |||||||| || |||||||||||||| || | |||||| || | Sbjct 94567 ATGAGTCTGCTAATGAAGGTTACAAATTTGGTCAAGAAGAAGAGACATGTAATATCGTGG 94508 Query 169191 CAGCACATGGATACTTCGGTAGATTAATCTTCCAGTATGCAAGTTTCAACAACTCA 169246 | || || || || || ||| |||||||||| || ||||| | ||||||||||||| Sbjct 94507 CTGCTCACGGTTATTTTGGTCGATTAATCTTTCAATATGCTACTTTCAACAACTCA 94452 >seq12982 Length=32303 Score = 163 bits (180), Expect = 3e-35 Identities = 333/492 (68%), Gaps = 2/492 (0%) Strand=Plus/Plus Query 168491 TTCTGCGAATGGGTAACAAGCACTAACAACAGACTTTATGTTGGTTGGTTCGGTGTCTTA 168550 |||||| | | | |||| ||||| | || | ||||| | || ||||| ||||| || Sbjct 473 TTCTGCAACTAGATAACTAGCACCGAACACCGTCTTTACATCGGATGGTTTGGTGTTTTG 532 Query 168551 ATGATCCCATGTTTATTAACAGCAGCAGCATGTTTCATTGTTGCATTTATTGCTGCACCA 168610 |||||||| ||||| || ||| | | | ||| | | || || ||||| || Sbjct 533 ATGATCCCTACCTTATTGACCGCAACTTCCGTACTTATTATCACCTTCATCGCTGCTCCT 592 Query 168611 CCTGTCGATATCGACGGAATCAGAGAACCTGTAGCAGGTGCTCTAATGTATGGAAACAAC 168670 || || ||||| || || || | || ||||| | ||| || |||| |||||||||| Sbjct 593 CCAGTAGATATTGATGGTATTCGTGAGCCTGTTTCTGGTTCTTTAATTTATGGAAACAGT 652 Query 168671 ATCATCTCAGGTGCAGTTGTTCCATCTTCAAACGCAATCGGTCTACACTTCTACCCAATT 168730 || ||||| ||||| || |||| ||| | ||||| | || || ||||||||| Sbjct 653 ATTATCTCTGGTGCTATTATTCCTACTTATGTGACGATCGGATTGCATTTTTACCCAATT 712 Query 168731 TGGGAAGCAGCTACAATCGATGAGTGGTTATATAATGGTGGTCCTTACCAGTTGGTAATC 168790 ||| |||| || | | ||||| |||||||| ||||| |||||||| | | | | Sbjct 713 TGGAAAGCTGCATCCGTTGATGAATGGTTATACAATGGCGGTCCTTATGACCTAATTGTT 772 Query 168791 TTCCACTTCCTAATCGGAATCTCTGCCTACATGGGTAGACAGTGGGAA-TTATCATACAG 168849 | || ||| || | || | || || |||| | | | |||||| ||| | || Sbjct 773 CTACATTTCTTACTTGGTGTAGCTTGTTATATGGATCGTGACTGGGAACTTAGTTTCCA- 831 Query 168850 ACTAGGTATGAGACCTTGGATCTGTGTTGCTTATTCAGCACCAGTATCTGCAGCATTTGC 168909 || |||||| | | |||||| |||||| |||||||| || || | | || ||| Sbjct 832 TCTGGGTATGCGCCTTTGGATTGTTGTTGCATATTCAGCTCCTGTTGCAGTTGCTACTGC 891 Query 168910 AGTATTCCTTGTATACCCATTTGGTCAGGGTTCTTTCTCTGATGGTATGCCTCTAGGAAT 168969 | ||| | | ||||| ||||||| | ||| ||||||||||||||| ||||||| Sbjct 892 TATTTTCTTGATTTACCCTATTGGTCAAGAAAGTTTTTCTGATGGTATGCCTTTAGGAAT 951 Query 168970 TTCTGGAACATT 168981 ||||| || || Sbjct 952 ATCTGGTACTTT 963 >seq8160 Length=957 Score = 105 bits (116), Expect = 8e-18 Identities = 82/98 (84%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 169148 GGTTACAAGTTCGGTCAAGAAGAAGAAACCTATAATATTGTTGCAGCACATGGATACTTC 169207 |||||||| || | | |||||||||| |||||||||||||| || || |||| || || Sbjct 347 GGTTACAAATTTGATTAAGAAGAAGAGACCTATAATATTGTGGCTGCTCATGATTATTTT 406 Query 169208 GGTAGATTAATCTTCCAGTATGCAAGTTTCAACAACTC 169245 ||| ||||||||||||| ||| | |||||||||||||| Sbjct 407 GGTCGATTAATCTTCCAATATCCTAGTTTCAACAACTC 444 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 564318579953280