Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dichanthelium_20oligosanthes_20[genbank_20GCA_5F001633215.2_202016- 09-29] 17,436 sequences; 589,166,415 total letters Query= NC_015284.1 Length=183806 Score E Sequences producing significant alignments: (Bits) Value seq16913 230 3e-55 seq12982 129 7e-25 seq10113 122 1e-22 seq12503 96.9 4e-15 seq666 86.0 7e-12 >seq16913 Length=117496 Score = 230 bits (254), Expect = 3e-55 Identities = 524/780 (67%), Gaps = 34/780 (4%) Strand=Plus/Minus Query 171820 TTCTGCGAATGGGTAACCTCAACTAACAACAGAATTTATGTTGGTTGGTTCGGTGTACTC 171879 |||||| | ||| |||| || | ||| | |||| | || ||||||||||| | Sbjct 95221 TTCTGCAACTGGATAACTAGCACCGAAAACCGTCTTTACATCGGATGGTTCGGTGTTTTG 95162 Query 171880 ATGATCCCATGTTTGCTCACAGCAGCAGCATGCTTCATCGTTGCATTCATTGCAGCACCT 171939 ||||||| || | || ||| | | || || | || ||||| || || ||| Sbjct 95161 ATGATCCGTACCTTATTAACCGCAACTTCCATATTTATTATCGCCTTCATCGCTGCTCCT 95102 Query 171940 CCTGTCGATATCGACGGAATCAGAGAACCAGTTGCGGGTTCTTTCTTATATGGTAACAAC 171999 || || ||||| || || || | || || ||| | ||||||| | ||| | ||||| Sbjct 95101 CCGGTAGATATTGATGGTATTCGTGAGCCTGTTTCTAGTTCTTTACTTTATAGAAACAAT 95042 Query 172000 ATCATCTCTGGTGCAGTTGTTCCATCATCAA-----------AC-------GCAATAGGT 172041 || || |||||||| || |||| || || || ||||| || Sbjct 95041 ATTATATCTGGTGCTATTATTCCTGCAGAAACTATTATTCCTACTTCTGTGGCAATCGGA 94982 Query 172042 CTCCACTTCTACCCTATCTGGGAAGCAGCAACCGTAGATGAATGGTTGTACAATGGTGGT 172101 | || || ||||| || ||| || | ||| | || ||||||||||| || ||| ||||| Sbjct 94981 TTGCATTTTTACCCAATTTGGAAAACTGCATCTGTTGATGAATGGTTATAAAATTGTGGT 94922 Query 172102 CCTTATCAGTTGGTAATCTTCCAC-TTCCTTA-TCGGTATCTCAGCATACATGGGAAGAC 172159 |||| | || | | | ||| | || ||| | ||| | | || ||||| | Sbjct 94921 CCTTCTGAGCTAAT--TGTTCTATATTTTTTACTTGGTGTAGCTTGTTATATGGGTCGTG 94864 Query 172160 AGTGGG-AACTATCATACAGATTAGGTATGAGACCATGGATATGTGTAGCATATTCAGCA 172218 |||||| |||| | | | | |||| | | || ||||| | | ||||||||||| Sbjct 94863 AGTGGGGAACTTAGTTTCCGTCTGGGTACGCGCCCTTGGATTGCTATTGCATATTCAGCT 94804 Query 172219 CCTGTATCAGCAGCATTTGCTGTGTTCCTTGTGTA-TCCATTCGGTCAGGGTTCATTCTC 172277 ||| | |||| || |||||| ||| | || || || ||| ||||| || ||||| Sbjct 94803 CCTTTG-CAGCTGCTAGTGCTGTTTTCTTGGTTTACTCTATT-GGTCAAGGGAGTTTCTC 94746 Query 172278 TGATGGTATGCCACTAGGTATCTCAGGTACGTTCAACTTTATGTTCGTGTTCCAAGCAGA 172337 |||||| |||| |||| || || |||| ||||||||||| | || ||||| | ||| Sbjct 94745 CGATGGTGTGCCTTTAGGAATATCTGGTAT-TTCAACTTTATAATTGTATTCCAGGTAGA 94687 Query 172338 GCATAACATTCTAATGCATCCTTTCCACATGGCAGGAGTAGCAGGAATGTTTGGAGGATC 172397 ||| ||||| || |||||| | || |||||| ||| |||| || | || || || || Sbjct 94686 GCACAACATCCTTATGCATTCATTTCACATGTTAGGTATAGCTGGTGTATTCGGCGGTTC 94627 Query 172398 TTTATTCTCAGCA--ATGCACGGTTCTTTAGTTACATCTTCTCTAATCAGAGAGACAACT 172455 ||| |||| ||||| ||||| || | || ||| | | ||||| || || ||| Sbjct 94626 TTT-----CAGCGTTATGCATGGTTCCTTGGCAACCTCTAGTTTGATCAGGGAAACCACT 94572 Query 172456 GAAGCAGAATCACAGAACTACGGATACAAGTTCGGACAAGAAGAAGAAACATACAACATA 172515 ||| || || || | || ||||| || || ||||||||||| |||| || || Sbjct 94571 GAAAATGAGTCTGCTAATGAAGGTTACAAATTTGGTCAAGAAGAAGAGACATGTAATATC 94512 Query 172516 GTAGCAGCACACGGTTACTTTGGTCGTCTTATCTTCCAGTATGCTTCTTTCAACAACTCA 172575 || || || |||||||| |||||||| | ||||| || |||||| |||||||||||||| Sbjct 94511 GTGGCTGCTCACGGTTATTTTGGTCGATTAATCTTTCAATATGCTACTTTCAACAACTCA 94452 >seq12982 Length=32303 Score = 129 bits (142), Expect = 7e-25 Identities = 266/390 (68%), Gaps = 8/390 (2%) Strand=Plus/Plus Query 171925 TTCATTGCAGCACCTCCTGTCGATATCGACGGAATCAGAGAACCAGTTGCGGGTTCTTTC 171984 ||||| || || ||||| || ||||| || || || | || || ||| | |||||||| Sbjct 578 TTCATCGCTGCTCCTCCAGTAGATATTGATGGTATTCGTGAGCCTGTTTCTGGTTCTTTA 637 Query 171985 TTATATGGTAACAACATCATCTCTGGTGCAGTTGTTCCATC--ATCAAACGCAATAGGTC 172042 | ||||| |||| || ||||||||||| || |||| | || ||| || || Sbjct 638 ATTTATGGAAACAGTATTATCTCTGGTGCTATTATTCCTACTTATGTGACG--ATCGGAT 695 Query 172043 TCCACTTCTACCCTATCTGGGAAGCAGCAACCGTAGATGAATGGTTGTACAATGGTGGTC 172102 | || || ||||| || ||| |||| ||| |||| ||||||||||| |||||||| |||| Sbjct 696 TGCATTTTTACCCAATTTGGAAAGCTGCATCCGTTGATGAATGGTTATACAATGGCGGTC 755 Query 172103 CTTATCAGTTGGTAATCTTCCAC-TTCCTTA-TCGGTATCTCAGCATACATGGGAAGACA 172160 ||||| | | | | ||| || || |||| | ||| | | || |||| | | Sbjct 756 CTTATGACCT--AATTGTTCTACATTTCTTACTTGGTGTAGCTTGTTATATGGATCGTGA 813 Query 172161 GTGGGAACTATCATACAGATTAGGTATGAGACCATGGATATGTGTAGCATATTCAGCACC 172220 |||||||| | | | |||||| | | ||||| ||| ||||||||||| || Sbjct 814 CTGGGAACTTAGTTTCCATCTGGGTATGCGCCTTTGGATTGTTGTTGCATATTCAGCTCC 873 Query 172221 TGTATCAGCAGCATTTGCTGTGTTCCTTGTGTATCCATTCGGTCAGGGTTCATTCTCTGA 172280 ||| ||| || |||| | ||| | | || || | ||||| | || ||||| Sbjct 874 TGTTGCAGTTGCTACTGCTATTTTCTTGATTTACCCTATTGGTCAAGAAAGTTTTTCTGA 933 Query 172281 TGGTATGCCACTAGGTATCTCAGGTACGTT 172310 ||||||||| |||| || || ||||| || Sbjct 934 TGGTATGCCTTTAGGAATATCTGGTACTTT 963 >seq10113 Length=56568 Score = 122 bits (134), Expect = 1e-22 Identities = 244/357 (68%), Gaps = 14/357 (4%) Strand=Plus/Minus Query 172951 TTTGATGTTCTTGACGACTGGTTAAAGAGAGATCGTTTCGTATTCATCGGATGGTCTGGT 173010 |||||| || | ||||||| |||| || || | ||| || || | |||||||||| Sbjct 48569 TTTGATATTATGGACGACTTGTTACGAAGGGACCATTTTGTTTTTGTATGATGGTCTGGC 48510 Query 173011 CTTTTACTTCTACCTTGTGCTTACCTTTCTATCGGTGGTTGGTTCTTAGGAACTACCTTC 173070 || || || | ||||||||||| || || | || |||||||| ||| ||||| || Sbjct 48509 CTATTGCTCTTTCCTTGTGCTTATTTTGCTTTAGGGGGTTGGTTTACAGGRACTACTTTT 48450 Query 173071 GTTACATCATGGTATACACATGGTATTGCAT-CTTCATATCTTGAAGGAGCAAACTTTTT 173129 || || || |||||||| ||||| |||| || ||| ||| | |||||| || || || Sbjct 48449 GTAACTTCTTGGTATACCCATGG-ATTGGATAGTTCCTATTTGGAAGGATGCAATTTCTT 48391 Query 173130 AACAGCAGCAGTCTCCACACCTGGCGACGCAATGGGT---CATAGTCTTCTGT---TCCT 173183 |||||| || || ||| |||| ||| | | || | |||| ||| | || Sbjct 48390 AACAGCGGCGGTTATCACTCCTG-----CTAATAGTTTAGCACACTCTT-TGTTACTACT 48337 Query 173184 TTGGGGACCTGAAGCACAAGGTTCATTCGTACGTTGGTTACAACTCGGAGGACTATGGAA 173243 ||||| | |||| ||| || || ||||| | ||| | || || || |||| Sbjct 48336 ATGGGGCCTGGAAGAACAGGGGGATTTTACTCGTTGATGTCAATTAGGTGGTCTGTGGAC 48277 Query 173244 CTTTGTAGCATTACATGGAGTCTTTGGACTCATAGGTTTCATGCTCCGTCAGTTTGA 173300 ||||| || | ||||| | ||| || |||||||||||| | ||||| ||||| Sbjct 48276 TTTTGTCGCTCTCCATGGGGCTTTTATGCTAATAGGTTTCATGTTACGTCAATTTGA 48220 Score = 104 bits (114), Expect = 3e-17 Identities = 207/303 (68%), Gaps = 3/303 (1%) Strand=Plus/Minus Query 173686 TGGTCACAGATATTTGGTATCGCATTTTCAAACAAAAGATTTTTACACTTCCTCATGTTG 173745 ||||| || ||||||||| | | ||||| || ||| | | ||||| ||| | ||| | Sbjct 1009 TGGTCCCAAATATTTGGTGTTTCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGCTA 950 Query 173746 TTCGTACCTGTCATGGGTATGTGGACATCATCCATAGGTATCGTAGGTCTTGCACTTAAC 173805 | |||| ||| || || | | || | | || || | || | || || || ||| Sbjct 949 CTTGTACTTGTAATCAGTTTATAGATGACTGCTATTGGC-TAGTTGCCCTGGCTCTGAAC 891 Query 173806 CTTAGAGCATACGACTTTGTATCTCAAGAGATAAGAGCAGCAGAAGATCCAGAGTTCGAG 173865 || | || || || ||| | || || | || | |||||||||||||| || || ||| Sbjct 890 CTATGTGCCTATGA-TTTCT-TCCCAGAAAATCCGTGCAGCAGAAGATCCTGAATTTGAG 833 Query 173866 ACTTTCTACACTAAGAATATACTTCTTAATGAAGGTATGAGAGCATGGATGTCATCTGTA 173925 ||||||||||| || |||| ||| | ||||| ||||| || |||||| || || Sbjct 832 ACTTTCTACACCAAATATATTCTTTTAAATGAGGGTATTCATGCGTGGATGGCAGCTCAG 773 Query 173926 GATCAACCACATGAGAACTTCGTATTTCCAGAAGAAGTGTTACCAAGAGGTAACGCACTT 173985 ||||| || ||||| || | |||| || || || || ||||| | || | ||| || Sbjct 772 GATCAGCCTCATGAAAATCTTATATTCCCTGAGGAGGTTCTACCATGTGGAATCGCTTTT 713 Query 173986 TAA 173988 ||| Sbjct 712 TAA 710 >seq12503 Length=143431 Score = 96.9 bits (106), Expect = 4e-15 Identities = 111/148 (75%), Gaps = 1/148 (1%) Strand=Plus/Plus Query 172951 TTTGATGTTCTTGACGACTGGTTAAAGAGAGATCGTTTCGTATTCATCGGATGGTCTGGT 173010 |||||| || | |||||||||||| || || |||||||| || || |||| ||| || Sbjct 88079 TTTGATATTATGGACGACTGGTTACGAAGGGACCGTTTCGTTTTTATAGGATTGTCCGGC 88138 Query 173011 CTTTTACTTCTACCTTGTGCTTACCTTTCTATCGGTGGTTGGTTCTTAGGAACTACCTTC 173070 || || || | ||||||||||| | || | || |||||||| |||| ||||| || Sbjct 88139 CTATTGCTCTTTCCTTGTGCTTATTTCGCTTTAGGGGGTTGGTTTATAGGGACTACTTTT 88198 Query 173071 GTTACATCATGGTATACACATGGTATTG 173098 | || || |||||||| ||||| |||| Sbjct 88199 ATAACTTCTTGGTATACCCATGG-ATTG 88225 >seq666 Length=229199 Score = 86.0 bits (94), Expect = 7e-12 Identities = 170/251 (68%), Gaps = 2/251 (1%) Strand=Plus/Minus Query 173650 GAAGAAACTTATAGTATGATTACAGCGAACAGATTCTGGTCACAGATATTTGGTATCGCA 173709 |||||||||||| ||| |||| || | | || ||||| || || |||||| | || Sbjct 152516 GAAGAAACTTATTCAATGGTTACTGCTTATCGCTTTTGGTCTCAAATCTTTGGTGTTGCT 152457 Query 173710 TTTTCAAACAAAAGATTTTTACACTTCCTCATGTTGTTCGTACCTGTCATGGGTATGTGG 173769 ||| || ||| | | ||||| ||| | ||||| || ||||| |||| ||| | ||| Sbjct 152456 TTTCTCAATAAAGGCTGGTTACATTTCTTTATGTTATTTGTACCCGTCACCGGTTTATGG 152397 Query 173770 ACATCATCCATAGGTATCGTAGGTCTTGCACTTAACCTTAGAGCATACGACTTTGTATCT 173829 | | || || | || || || || | ||||| | || | ||||| | || Sbjct 152396 ATGAGTGCTATTGGCGTAGTTGGCCTGGCTTTGAACCTACGTGCTTGTGACTTCATTTCC 152337 Query 173830 CAAGAGATAAGAGCAGCAGAAGATCCAGAGTTCGAGACTTTCTACACTAAGAATATACTT 173889 || || || ||||| |||||||| || || ||||||||||| | || ||||| || Sbjct 152336 CAGGAAATCCATGCAGCGGAAGATCCTGAATTTGAGACTTTCTATGCCAAAAATAT--TT 152279 Query 173890 CTTAATGAAGG 173900 |||| |||| Sbjct 152278 TTTAAACAAGG 152268 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 587923034240960