Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dichanthelium_20oligosanthes_20[genbank_20GCA_5F001633215.2_202016- 09-29] 17,436 sequences; 589,166,415 total letters Query= NC_015285.1 Length=174285 Score E Sequences producing significant alignments: (Bits) Value seq16913 298 6e-76 seq10113 242 4e-59 seq12982 159 4e-34 seq666 143 3e-29 seq12572 134 2e-26 seq8160 98.7 1e-15 >seq16913 Length=117496 Score = 298 bits (330), Expect = 6e-76 Identities = 534/775 (69%), Gaps = 26/775 (3%) Strand=Plus/Minus Query 162385 TTCTGCGAGTGGGTAACTTCTACCAATAACCGCCTCTATGTCGGTTGGTTCGGCGTACTG 162444 |||||| | ||| ||||| ||| | ||||| || || |||| |||||||| || || Sbjct 95221 TTCTGCAACTGGATAACTAGCACCGAAAACCGTCTTTACATCGGATGGTTCGGTGTTTTG 95162 Query 162445 ATGATTCCAACTCTGTTGGCAGCAACCATCTGTTTCATCGTCGCCTTCGTCGCTGCTCCC 162504 ||||| | || | || | ||||| | || || |||||||| |||||||||| Sbjct 95161 ATGATCCGTACCTTATTAACCGCAACTTCCATATTTATTATCGCCTTCATCGCTGCTCCT 95102 Query 162505 CCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTATGGTAACAAC 162564 || || || || || || || ||||| || || || |||| | | ||| | ||||| Sbjct 95101 CCGGTAGATATTGATGGTATTCGTGAGCCTGTTTCTAGTTCTTTACTTTATAGAAACAAT 95042 Query 162565 ATCATCTCTGGTGCAGTTGTTCCATC-----------TTCCAAC-------GCAATTGGT 162606 || || |||||||| || |||| | |||| || ||||| || Sbjct 95041 ATTATATCTGGTGCTATTATTCCTGCAGAAACTATTATTCCTACTTCTGTGGCAATCGGA 94982 Query 162607 CTTCACTTCTATCCCATCTGGGAAGCCGCATCACTTGATGAGTGGCTGTATAACGGTGGT 162666 | || || || || || ||| || | ||||| ||||||| ||| | || || ||||| Sbjct 94981 TTGCATTTTTACCCAATTTGGAAAACTGCATCTGTTGATGAATGGTTATAAAATTGTGGT 94922 Query 162667 CCTTTCCAACTCGTAGTATTCCACTTCCTGATCGGCATCTATGCCTACATGGGACGTGAA 162726 |||| | || | || | | || | | || | | || ||||| ||||| Sbjct 94921 CCTTCTGAGCTAATTGTTCTATATTTTTTACTTGGTGTAGCTTGTTATATGGGTCGTGAG 94862 Query 162727 TGGG-AACTCTCTTACCGTCTTGGTATGCGTCCATGGATCTGCG-TAGCATACTCTGCAC 162784 |||| |||| || |||||| |||| ||| || ||||| ||| | ||||| || || | Sbjct 94861 TGGGGAACTTAGTTTCCGTCTGGGTACGCGCCCTTGGAT-TGCTATTGCATATTCAGCTC 94803 Query 162785 CTGTTGCAGCAGCATCGGCAGTCTTCCTGGTCTATCCTTTCGGTCAAGGTTCTTTCTCTG 162844 || ||||||| || || || ||| |||| || || | |||||||| |||||| | Sbjct 94802 CT-TTGCAGCTGCTAGTGCTGTTTTCTTGGTTTACTCTATTGGTCAAGGGAGTTTCTCCG 94744 Query 162845 ACGCAATGCCCTTGGGTATCAGTGGTACATTCAACTACATGCTTGTCTTCCAAGCAGAGC 162904 | | |||| || || || ||||| ||||||| || |||| ||||| | ||||| Sbjct 94743 ATGGTGTGCCTTTAGGAATATCTGGTAT-TTCAACTTTATAATTGTATTCCAGGTAGAGC 94685 Query 162905 ACAACATTCTGATGCATCCCTTCCACATGTTGGGTGTCGCAGGTGTCTTCGGTGGTTCAC 162964 ||||||| || |||||| | || |||||||| ||| | || ||||| ||||| ||||| Sbjct 94684 ACAACATCCTTATGCATTCATTTCACATGTTAGGTATAGCTGGTGTATTCGGCGGTTCT- 94626 Query 162965 TGTTCAGTGCAATGCACGGTTCTTTGGTTACATCTTCACTCGTCCGTGAGACGACTGAAA 163024 ||||| | ||||| ||||| |||| || ||| | || | || || ||||||| Sbjct 94625 --TTCAGCGTTATGCATGGTTCCTTGGCAACCTCTAGTTTGATCAGGGAAACCACTGAAA 94568 Query 163025 CTGAGTCACAGAACTATGGTTACAAGTTCGGTCAAGAAGAAGAGACATACAACATCGTCG 163084 |||||| || | |||||||| || ||||||||||||||||||| || ||||| | Sbjct 94567 ATGAGTCTGCTAATGAAGGTTACAAATTTGGTCAAGAAGAAGAGACATGTAATATCGTGG 94508 Query 163085 CAGCCCATGGTTACTTCGGTCGTTTGATCTTCCAATATGCATCATTCAACAACTC 163139 | || || ||||| || ||||| || ||||| |||||||| | ||||||||||| Sbjct 94507 CTGCTCACGGTTATTTTGGTCGATTAATCTTTCAATATGCTACTTTCAACAACTC 94453 >seq10113 Length=56568 Score = 242 bits (268), Expect = 4e-59 Identities = 493/723 (68%), Gaps = 7/723 (1%) Strand=Plus/Minus Query 163621 TTTGATGTCCTGGATGACTGGCTTAAGC-GCGATCGTTTCGTATTTATTGGTTGGTCTGG 163679 |||||| | |||| |||| | ||| | | || | ||| || ||| | | |||||||| Sbjct 48569 TTTGATATTATGGACGACTTG-TTACGAAGGGACCATTTTGTTTTTGTATGATGGTCTGG 48511 Query 163680 ATTACTACTTCTTCCCACTGCTTATATGGCAATTGGTGGCTGGCTTACTGGTACAACTTT 163739 || | || |||| ||||||| | || | || || ||| |||| || || ||||| Sbjct 48510 CCTATTGCTCTTTCCTTGTGCTTATTTTGCTTTAGGGGGTTGGTTTACAGGRACTACTTT 48451 Query 163740 CGTTACGTCGTGGTACACCCATGGACTGGCAACTTCCTATCTTGAGGG-TGCTAATTTTC 163798 || || || ||||| ||||||||| ||| | ||||||| | || || ||| ||||| Sbjct 48450 TGTAACTTCTTGGTATACCCATGGATTGGATAGTTCCTATTTGGAAGGATGC-AATTTCT 48392 Query 163799 TCACAGCGGCTGTGTCAACGCCTGCTGACGCTATGGGTCATTCTCTTCTTCTTCTCTGGG 163858 | |||||||| || || |||||| | | | | || ||| | | || || |||| Sbjct 48391 TAACAGCGGCGGTTATCACTCCTGCTAATAGTTTAGCACACTCTTTGTTACTACTATGGG 48332 Query 163859 GTCCTGAGGCTCAGGGCGATTTCGTCCGCTGGATCCAACTTGGGGGACTCTGGAATTTTG 163918 | | || | ||||| ||||| || || ||| | || || || |||| ||||| Sbjct 48331 GCCTGGAAGAACAGGGGGATTTTACTCGTTGATGTCAATTAGGTGGTCTGTGGACTTTTG 48272 Query 163919 TGGCACTCCACGGAGCCTTTGCTCTCATTGGTTTCATGCTTCGGCAATTTGAACTTGCTC 163978 | || ||||| || || ||| || || ||||||||| | || |||||||||| ||||| Sbjct 48271 TCGCTCTCCATGGGGCTTTTATGCTAATAGGTTTCATGTTACGTCAATTTGAACATGCTC 48212 Query 163979 -GCCTGATTGGAATCAGACCCTACAATGCGATTGCTTTCTCTGGTCCTATTGCTGTCTTC 164037 | ||| || | | | || || ||||| ||| | |||||| |||| | ||| || Sbjct 48211 AGTCTG-TTCAATTGCGGCCTTATAATGCAATTTCATTCTCTAGTCCAACCATTGTTTTT 48153 Query 164038 -GTTAGTGTCTTTCTCATCTACCCTCTGGGTCAATCAAGTTGGTTCTTCGCTCCATCTTT 164096 ||| ||| || || | || || |||| ||||| ||| |||||| | | ||| Sbjct 48152 TGTTTTTGTATTCCTTGTTTATCCAATGGGACAATCTGGTTAGTTCTTTGTGCTGAGTTT 48093 Query 164097 TGGAGTGGCAGCAATCTTCAGATTCCTCTTATTCCTTCAAGGATTTCATAACTGGACTTT 164156 ||| | | || || || |||| || | ||| | |||||||||| ||| ||||| || Sbjct 48092 TGGCATAGAAGTTATATTTCAATTCATCCTTTTCTTCCAAGGATTTCCTAATTGGACGTT 48033 Query 164157 GAACCCCTTCCATATGATGGGAGTTGCTGGTATACTAGGCGGAGCATTGCTATCTGCTAT 164216 ||||| || ||||||||||| ||||| || || |||||| ||| |||||| |||| Sbjct 48032 AAACCCATTTCATATGATGGGGGTTGCCGGAGTATTAGGCGCAGCTCTGCTATGCTCTAT 47973 Query 164217 TCACGGAGTCACAGTTGAAAATACATTGTATGAAGATGGAGAACAAGCAAACACCTTTAA 164276 || || | || | ||||| || | | |||||| || ||||| ||||| | Sbjct 47972 CCATGGGGCTACCATAGAAAACACTCTATTCAAAGATGATGATGGTGCAAATACCTTCTA 47913 Query 164277 GGCGTTTGATTCGACACAGGAAGAAGAGACTTATTCTATGGTCACTGCAAACCGCTTCTG 164336 || | | | | || || | ||||| |||||||| ||| ||||| | ||| |||| || Sbjct 47912 TGCTTGTAACGCAACTCAAGCTGAAGAAACTTATTCAATGATCACTACTAACAGCTTTTG 47853 Query 164337 GTC 164339 ||| Sbjct 47852 GTC 47850 Score = 96.9 bits (106), Expect = 4e-15 Identities = 139/194 (72%), Gaps = 3/194 (2%) Strand=Plus/Minus Query 164335 TGGTCGCAGATCTTCGGTGTTGCGTTTTCTAACAAGCGGTGGCTTCATTTTTTCATGTTG 164394 ||||| || || || |||||| | ||||| || || || ||| | ||||| || ||| | Sbjct 1009 TGGTCCCAAATATTTGGTGTTTCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGCTA 950 Query 164395 TTTGTGCCTGTTATGGGTCTATGGACATCCTCTATTGGCATTATTGGCCTTGCTCTCAAT 164454 |||| | ||| || || ||| || | |||||||| | ||| ||| ||||| || Sbjct 949 CTTGTACTTGTAATCAGTTTATAGATGACTGCTATTGGC-TAGTTGCCCTGGCTCTGAAC 891 Query 164455 CTTCGTGCTTACGATTTTGTAAGTCAAGAGATTAGAGCAGCAGAAGATCCTGAGTTCGAG 164514 || |||| || ||||| | || | || | ||||||||||||||||| || ||| Sbjct 890 CTATGTGCCTATGATTTCTTCC--CAGAAAATCCGTGCAGCAGAAGATCCTGAATTTGAG 833 Query 164515 ACTTTCTATACCAA 164528 |||||||| ||||| Sbjct 832 ACTTTCTACACCAA 819 >seq12982 Length=32303 Score = 159 bits (176), Expect = 4e-34 Identities = 332/492 (67%), Gaps = 2/492 (0%) Strand=Plus/Plus Query 162385 TTCTGCGAGTGGGTAACTTCTACCAATAACCGCCTCTATGTCGGTTGGTTCGGCGTACTG 162444 |||||| | | | ||||| ||| | |||| || || |||| ||||| || || || Sbjct 473 TTCTGCAACTAGATAACTAGCACCGAACACCGTCTTTACATCGGATGGTTTGGTGTTTTG 532 Query 162445 ATGATTCCAACTCTGTTGGCAGCAACCATCTGTT-TCATCGTCGCCTTCGTCGCTGCTCC 162503 ||||| || || | ||| | ||||| || || | || || ||||| |||||||||| Sbjct 533 ATGATCCCTACCTTATTGACCGCAACT-TCCGTACTTATTATCACCTTCATCGCTGCTCC 591 Query 162504 CCCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTATGGTAACAA 162563 || || || || || || || ||||| || || ||||||| | || ||||| |||| Sbjct 592 TCCAGTAGATATTGATGGTATTCGTGAGCCTGTTTCTGGTTCTTTAATTTATGGAAACAG 651 Query 162564 CATCATCTCTGGTGCAGTTGTTCCATCTTCCAACGCAATTGGTCTTCACTTCTATCCCAT 162623 || ||||||||||| || |||| ||| | || || | || || || || || Sbjct 652 TATTATCTCTGGTGCTATTATTCCTACTTATGTGACGATCGGATTGCATTTTTACCCAAT 711 Query 162624 CTGGGAAGCCGCATCACTTGATGAGTGGCTGTATAACGGTGGTCCTTTCCAACTCGTAGT 162683 ||| |||| ||||| ||||||| ||| | || || || ||||||| | || | || Sbjct 712 TTGGAAAGCTGCATCCGTTGATGAATGGTTATACAATGGCGGTCCTTATGACCTAATTGT 771 Query 162684 ATTCCACTTCCTGATCGGCATCTATGCCTACATGGGACGTGAATGGGAACTCTCTTACCG 162743 | || ||| | | || | | || |||| ||||| |||||||| || || Sbjct 772 TCTACATTTCTTACTTGGTGTAGCTTGTTATATGGATCGTGACTGGGAACTTAGTTTCCA 831 Query 162744 TCTTGGTATGCGTCCATGGATCTGCGTAGCATACTCTGCACCTGTTGCAGCAGCATCGGC 162803 ||| |||||||| | ||||| || ||||| || || |||||||||| || | || Sbjct 832 TCTGGGTATGCGCCTTTGGATTGTTGTTGCATATTCAGCTCCTGTTGCAGTTGCTACTGC 891 Query 162804 AGTCTTCCTGGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGACGCAATGCCCTTGGGTAT 162863 | ||| || | || ||| | ||||||| ||| ||||| | ||||| || || || Sbjct 892 TATTTTCTTGATTTACCCTATTGGTCAAGAAAGTTTTTCTGATGGTATGCCTTTAGGAAT 951 Query 162864 CAGTGGTACATT 162875 |||||| || Sbjct 952 ATCTGGTACTTT 963 >seq666 Length=229199 Score = 143 bits (158), Expect = 3e-29 Identities = 186/252 (74%), Gaps = 4/252 (2%) Strand=Plus/Minus Query 164299 GAAGAGACTTATTCTATGGTCACTGCAAACCGCTTCTGGTCGCAGATCTTCGGTGTTGCG 164358 ||||| |||||||| ||||| ||||| | ||||| ||||| || ||||| |||||||| Sbjct 152516 GAAGAAACTTATTCAATGGTTACTGCTTATCGCTTTTGGTCTCAAATCTTTGGTGTTGC- 152458 Query 164359 TTTTCT-AACAAGCGGTGGCTTCATTTTTTCATGTTGTTTGTGCCTGTTATGGGTCTATG 164417 |||||| || || | ||| | ||||| || ||||| ||||| || || | ||| |||| Sbjct 152457 TTTTCTCAATAAAGGCTGGTTACATTTCTTTATGTTATTTGTACCCGTCACCGGTTTATG 152398 Query 164418 GACATCCTCTATTGGCATTATTGGCCTTGCTCTCAATCTTCGTGCTTACGATTTTGTAAG 164477 || |||||||| | ||||||| ||| | || || ||||||| || || | Sbjct 152397 GATGAGTGCTATTGGCGTAGTTGGCCTGGCTTTGAACCTACGTGCTTGTGACTTCATTTC 152338 Query 164478 TCAAGAGATTAGAGCAGCAGAAGATCCTGAGTTCGAGACTTTCTATACCAAGAACATCTT 164537 || || || ||||| ||||||||||| || |||||||||||| |||| || || || Sbjct 152337 CCAGGAAATCCATGCAGCGGAAGATCCTGAATTTGAGACTTTCTATGCCAAAAATAT-TT 152279 Query 164538 ATTGAACGAAGG 164549 || ||| |||| Sbjct 152278 TTTAAAC-AAGG 152268 >seq12572 Length=34890 Score = 134 bits (148), Expect = 2e-26 Identities = 348/528 (66%), Gaps = 2/528 (0%) Strand=Plus/Minus Query 163651 GATCGTTTCGTATTTATTGGTTGGTCTGGATTACTACTTCTTCCCACTGCTTATATGGCA 163710 || |||||||| ||| || |||||| || || | || |||| ||||||| | || Sbjct 27219 GACCGTTTCGTTTTTTTTTTTTGGTCCGGCCTATTGCTCTTTCCTTGTGCTTATTTCGCT 27160 Query 163711 ATTGGTGGCTGGCTTACTGGTACAACTTTCGTTACGTCGTGGTACACCCATGGACTGGCA 163770 || | ||| |||| || || ||||| || || || ||||| || | |||| Sbjct 27159 TTTTTTTTTTGGTTTACAGGGACTACTTTTGTAACTTCTTGGTATACTTTTTTTTTGGCT 27100 Query 163771 ACTTCCTATCTTGAGGGTGCTAATTTTCTCACAGCGGCTGTGTCAACGCCTGCTGACGCT 163830 | ||||||| | || ||| ||||| | || | | | || || ||||| | | Sbjct 27099 AGTTCCTATTTGGAAGGTTGCAATTTCTTAACCGTTTTTTTTTCCACTCCTGCCAATAGT 27040 Query 163831 ATGGGTCATTCTCTTCTTCTTCTCTGGGGTCCTGAGGCTCAGGGCGATTTCGTCCGCTGG 163890 | | || ||| | | || | | || || || ||||| ||||| || ||| Sbjct 27039 TTAGCACACTCTTTGTTACTATTTTTTTTCCCGGAAGCACAGGGGGATTTTACTCGTTGG 26980 Query 163891 ATCCAACTTGGGGGACTCTGGAATTTTGTGGCACTCCACGGAGCCTTTGCTCTCATTGGT 163950 ||| || | |||| |||||| || ||||| || || ||||| || ||| | Sbjct 26979 TGTCAATTTTTTTTTTTGTGGACTTTTGTCGCTCTCCATGGGGCTTTTGCACTAATTTTT 26920 Query 163951 TTCATGCTTCGGCAATTTGAACTTGCTCGC-CTGATTGGAATCAGACCCTACAATGCGAT 164009 || ||| | || ||||||||||||||||| ||| || | | | ||||| || Sbjct 26919 TTTATGTTACGTCAATTTGAACTTGCTCGGTCTG-TTCAATTGTTTTTTTTTAATGCAAT 26861 Query 164010 TGCTTTCTCTGGTCCTATTGCTGTCTTCGTTAGTGTCTTTCTCATCTACCCTCTGGGTCA 164069 | | ||||||||||| | ||||| || ||| | | || || || || || ||||| || Sbjct 26860 TTCATTCTCTGGTCCGTTCGCTGTTTTTGTTTTTTTTTTCCTTATTTATCCACTGGGACA 26801 Query 164070 ATCAAGTTGGTTCTTCGCTCCATCTTTTGGAGTGGCAGCAATCTTCAGATTCCTCTTATT 164129 ||| |||||||||| | | | |||||| || ||||| || || ||||| || | || Sbjct 26800 ATCTGGTTGGTTCTTTGTTTTTTTTTTTGGCGTAGCAGCTATATTTCGATTCATCCTTTT 26741 Query 164130 CCTTCAAGGATTTCATAACTGGACTTTGAACCCCTTCCATATGATGGG 164177 | | |||||||| ||||| || ||||| || ||||||||||| Sbjct 26740 CTTCTTTTTTTTTCATAATTGGACATTAAACCCATTTCATATGATGGG 26693 >seq8160 Length=957 Score = 98.7 bits (108), Expect = 1e-15 Identities = 102/134 (76%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 163020 TGAAACTGAGTCACAGAACTATGGTTACAAGTTCGGTCAAGAAGAAGAGACATACAACAT 163079 ||||| |||||| || | |||||||| || | | ||||||||||||| || || || Sbjct 325 TGAAAATGAGTCTGCTAATGAGGGTTACAAATTTGATTAAGAAGAAGAGACCTATAATAT 384 Query 163080 CGTCGCAGCCCATGGTTACTTCGGTCGTTTGATCTTCCAATATGCATCATTCAACAACTC 163139 || || || |||| ||| || ||||| || |||||||||||| | ||||||||||| Sbjct 385 TGTGGCTGCTCATGATTATTTTGGTCGATTAATCTTCCAATATCCTAGTTTCAACAACTC 444 Query 163140 CCGTTCCTTGCACT 163153 ||||| || |||| Sbjct 445 TCGTTCTTTACACT 458 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 557462474567200