Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dichanthelium_20oligosanthes_20[genbank_20GCA_5F001633215.2_202016- 09-29] 17,436 sequences; 589,166,415 total letters Query= NC_015286.1 Length=175230 Score E Sequences producing significant alignments: (Bits) Value seq16913 356 3e-93 seq10113 286 4e-72 seq12982 228 9e-55 seq12572 176 5e-39 seq666 167 3e-36 seq12503 87.8 2e-12 seq8160 87.8 2e-12 >seq16913 Length=117496 Score = 356 bits (394), Expect = 3e-93 Identities = 545/775 (70%), Gaps = 24/775 (3%) Strand=Plus/Minus Query 167087 CTTTTGCGATTGGGTTACCAGCACTAACAACCGTCTGTATGTCGGTTGGTTCGGCGTTCT 167146 ||| ||| | ||| | || ||||| | |||||||| || |||| |||||||| ||| | Sbjct 95222 CTTCTGCAACTGGATAACTAGCACCGAAAACCGTCTTTACATCGGATGGTTCGGTGTTTT 95163 Query 167147 GATGATCCCTACGTTGCTTGCAGCAACCATCTGTTTCATCATCGCCTTCGTCGGTGCTCC 167206 |||||||| ||| || | | ||||| | || || ||||||||| ||| |||||| Sbjct 95162 GATGATCCGTACCTTATTAACCGCAACTTCCATATTTATTATCGCCTTCATCGCTGCTCC 95103 Query 167207 TCCTGTGGACATCGATGGTATCCGCGAACCAGTTGCTGGTTCACTCATGTATGGTAACAA 167266 ||| || || || |||||||| || || || ||| || |||| | | ||| | ||||| Sbjct 95102 TCCGGTAGATATTGATGGTATTCGTGAGCCTGTTTCTAGTTCTTTACTTTATAGAAACAA 95043 Query 167267 CATCATCTCTGGTGC------------AG------TTGTTCCTTCTTCTAATGCTATTGG 167308 || || |||||||| || || ||||| ||||| || || || Sbjct 95042 TATTATATCTGGTGCTATTATTCCTGCAGAAACTATTATTCCTACTTCTGTGGCAATCGG 94983 Query 167309 TCTTCACTTCTATCCCATCTGGGAAGCAGCAACCCTCGACGAGTGGTTGTACAATGGTGG 167368 | || || || || || ||| || | ||| | | || || ||||| || ||| |||| Sbjct 94982 ATTGCATTTTTACCCAATTTGGAAAACTGCATCTGTTGATGAATGGTTATAAAATTGTGG 94923 Query 167369 TCCTTTCCAACTCGTAGTTTTCCACTTCCTGATTGGCATCTATGCCTATATGGGTCGTGA 167428 ||||| | || | ||| | | || | |||| | | |||||||||||||| Sbjct 94922 TCCTTCTGAGCTAATTGTTCTATATTTTTTACTTGGTGTAGCTTGTTATATGGGTCGTGA 94863 Query 167429 GTGGG-AACTCTCTTACCGTCTCGGTATGCGTCCCTGGATCTGTGTTGCATACTCTGCTC 167487 ||||| |||| || |||||| |||| ||| || ||||| | ||||||| || |||| Sbjct 94862 GTGGGGAACTTAGTTTCCGTCTGGGTACGCGCCCTTGGATTGCTATTGCATATTCAGCTC 94803 Query 167488 CAGTCGCTGCAGCATCTGCTGTATTCCTCGTCTATCCTTTCGGTCAAGGTTCTTTCTCTG 167547 | | || || || |||||| ||| | || || || | |||||||| |||||| | Sbjct 94802 CTTT-GCAGCTGCTAGTGCTGTTTTCTTGGTTTACTCTATTGGTCAAGGGAGTTTCTCCG 94744 Query 167548 ACGCGATGCCTCTTGGTATCTCTGGTACATTCAACTACATGCTTGTCTTCCAAGCAGAGC 167607 | | ||||| | || || ||||||| ||||||| || |||| ||||| | ||||| Sbjct 94743 ATGGTGTGCCTTTAGGAATATCTGGTAT-TTCAACTTTATAATTGTATTCCAGGTAGAGC 94685 Query 167608 ACAACATCCTGATGCACCCCTTCCATATGCTCGGCGTTGCTGGCGTATTCGGCGGTTCTC 167667 |||||||||| ||||| | || || ||| | || | ||||| ||||||||||||||| Sbjct 94684 ACAACATCCTTATGCATTCATTTCACATGTTAGGTATAGCTGGTGTATTCGGCGGTTCT- 94626 Query 167668 TGTTCAGTGCAATGCACGGTTCTCTGGTTACCTCTTCGCTGGTTCGTGAAACCACCGAAA 167727 ||||| | ||||| ||||| ||| |||||| || | | |||||||| |||| Sbjct 94625 --TTCAGCGTTATGCATGGTTCCTTGGCAACCTCTAGTTTGATCAGGGAAACCACTGAAA 94568 Query 167728 CTGAGTCCCAGAACTATGGTTACAAGTTCGGTCAGGAAGAAGAGACGTATAACATCGTCG 167787 |||||| || | |||||||| || ||||| ||||||||||| | ||| ||||| | Sbjct 94567 ATGAGTCTGCTAATGAAGGTTACAAATTTGGTCAAGAAGAAGAGACATGTAATATCGTGG 94508 Query 167788 CTGCTCATGGTTACTTCGGTCGCCTGATCTTCCAATACGCATCCTTCAACAACTC 167842 ||||||| ||||| || ||||| | ||||| ||||| || | ||||||||||| Sbjct 94507 CTGCTCACGGTTATTTTGGTCGATTAATCTTTCAATATGCTACTTTCAACAACTC 94453 >seq10113 Length=56568 Score = 286 bits (316), Expect = 4e-72 Identities = 485/696 (70%), Gaps = 7/696 (1%) Strand=Plus/Minus Query 168511 GGGATCGTTTCGTTTTTGTTGGTTGGTCTGGACTTCTTCTTTTTCCCACTGCTTATCTTG 168570 |||| | ||| |||||||| | |||||||| || | || ||||| ||||||| ||| Sbjct 48541 GGGACCATTTTGTTTTTGTATGATGGTCTGGCCTATTGCTCTTTCCTTGTGCTTATTTTG 48482 Query 168571 CTATTGGCGGTTGGCTTACTGGGACTGCTTTCGTCACGAGTTGGTATACTCACGGGTTGG 168630 || | || |||||| |||| || ||| |||| || || ||||||||| || || |||| Sbjct 48481 CTTTAGGGGGTTGGTTTACAGGRACTACTTTTGTAACTTCTTGGTATACCCATGGATTGG 48422 Query 168631 CAAGTTCCTATCTGGAGGGC-GCAAACTTTCTTA-CTGCGGCAGTTAGTACTCCAGCAGA 168688 ||||||||| |||| || |||| ||||||| | ||||| |||| ||||| || | Sbjct 48421 ATAGTTCCTATTTGGAAGGATGCAA--TTTCTTAACAGCGGCGGTTATCACTCCTGCTAA 48364 Query 168689 TTCTATGGGTCATTCTCTTCTGCTTCTCTGGGGTCCTGAGGCACAAGGGGATTTCGTCAG 168748 | | | | || ||| | | || || ||||| | || | ||| |||||||| | Sbjct 48363 TAGTTTAGCACACTCTTTGTTACTACTATGGGGCCTGGAAGAACAGGGGGATTTTACTCG 48304 Query 168749 ATGGTGTCAACTTGGAGGACTCTGGGCTTTTGTGGCGCTCCACGGGGCTTTCGCTCTAAT 168808 || |||||| | || || || ||| ||||||| || ||||| |||||||| ||||| Sbjct 48303 TTGATGTCAATTAGGTGGTCTGTGGACTTTTGTCGCTCTCCATGGGGCTTTTATGCTAAT 48244 Query 168809 CGGTTTCATGCTTCGTCAGTTTGAACTGGCAC-GTCTCATCGGTATCCGTCCCTACAATG 168867 ||||||||| | ||||| ||||||| || | |||| || | | || || || |||| Sbjct 48243 AGGTTTCATGTTACGTCAATTTGAACATGCTCAGTCTGTTCAAT-TGCGGCCTTATAATG 48185 Query 168868 CTATTGCGTTCTCTGGTCCTATCGCTGTTTTT-GTTAGCGTCTTTCTCATCTACCCTCTG 168926 | ||| | |||||| |||| | | ||||||| ||| || || || | || || || Sbjct 48184 CAATTTCATTCTCTAGTCCAACCATTGTTTTTTGTTTTTGTATTCCTTGTTTATCCAATG 48125 Query 168927 GGTCAATCGAGTTGGTTTTTCGCTCCATCTTTCGGGGTCTCAGCAATCTTCCGATTCCTT 168986 || ||||| ||| ||| || | | ||| || | || || || | |||| | Sbjct 48124 GGACAATCTGGTTAGTTCTTTGTGCTGAGTTTTGGCATAGAAGTTATATTTCAATTCATC 48065 Query 168987 CTCTTCCTACAAGGATTCCATAACTGGACACTGAATCCATTTCATATGATGGGTGTAGCA 169046 || ||| | |||||||| | ||| ||||| | || ||||||||||||||||| || || Sbjct 48064 CTTTTCTTCCAAGGATTTCCTAATTGGACGTTAAACCCATTTCATATGATGGGGGTTGCC 48005 Query 169047 GGTATTTTGGGAGGAGCCTTGCTTTCTGCCATTCATGGTGTTACAGTAGAGAATACTCTG 169106 || | || || | ||| |||| | | || ||||| | ||| |||| || ||||| Sbjct 48004 GGAGTATTAGGCGCAGCTCTGCTATGCTCTATCCATGGGGCTACCATAGAAAACACTCTA 47945 Query 169107 TATCAAGATGGTGAACAAGCAAATACTTTCAAAGCATTTGACAGCACTCAGGAAGAGGAG 169166 | |||||| ||| |||||||| ||| | || | | || ||||| | || || Sbjct 47944 TTCAAAGATGATGATGGTGCAAATACCTTCTATGCTTGTAACGCAACTCAAGCTGAAGAA 47885 Query 169167 ACCTATTCAATGGTTACTGCAAACCGTTTCTGGTCT 169202 || ||||||||| | ||| | ||| | || |||||| Sbjct 47884 ACTTATTCAATGATCACTACTAACAGCTTTTGGTCT 47849 Score = 150 bits (166), Expect = 2e-31 Identities = 205/284 (72%), Gaps = 3/284 (1%) Strand=Plus/Minus Query 169197 TGGTCTCAGATCTTTGGTATTGCGTTCAGTAATAAGAGGTGGTTGCATTTCTTTATGCTG 169256 ||||| || || |||||| || | || ||||| | ||||| |||||||||||||| Sbjct 1009 TGGTCCCAAATATTTGGTGTTTCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGCTA 950 Query 169257 TTTGTTCCTGTTATGGGTCTTTGGACAAGTTCCATCGGTATTATTGGTCTTGCTCTCAAC 169316 |||| | ||| || || | | || | | | || || | ||| || ||||| ||| Sbjct 949 CTTGTACTTGTAATCAGTTTATAGATGACTGCTATTGGC-TAGTTGCCCTGGCTCTGAAC 891 Query 169317 CTTCGTGCTTATGACTTTGTTTCCCAAGAGATCAGAGCAGCAGAAGATCCAGAGTTTGAG 169376 || |||| ||||| || |||||| | ||| | |||||||||||||| || |||||| Sbjct 890 CTATGTGCCTATGATTTC--TTCCCAGAAAATCCGTGCAGCAGAAGATCCTGAATTTGAG 833 Query 169377 ACGTTCTACACCAAGAACATCCTCTTGAACGAAGGTCTTCGTGCATGGTTAGCACCTATT 169436 || ||||||||||| | || || || || || ||| ||| ||| ||| | ||| || Sbjct 832 ACTTTCTACACCAAATATATTCTTTTAAATGAGGGTATTCATGCGTGGATGGCAGCTCAG 773 Query 169437 GATCAACCTCATGAGAACTTTGTGTTCCCTGAGGAAGTACTTCC 169480 ||||| |||||||| || || | ||||||||||| || || || Sbjct 772 GATCAGCCTCATGAAAATCTTATATTCCCTGAGGAGGTTCTACC 729 >seq12982 Length=32303 Score = 228 bits (252), Expect = 9e-55 Identities = 348/493 (71%), Gaps = 2/493 (0%) Strand=Plus/Plus Query 167087 CTTTTGCGATTGGGTTACCAGCACTAACAACCGTCTGTATGTCGGTTGGTTCGGCGTTCT 167146 ||| ||| | | | | || ||||| | ||||||| || |||| ||||| || ||| | Sbjct 472 CTTCTGCAACTAGATAACTAGCACCGAACACCGTCTTTACATCGGATGGTTTGGTGTTTT 531 Query 167147 GATGATCCCTACGTTGCTTGCAGCAACCATCTGT-TTCATCATCGCCTTCGTCGGTGCTC 167205 |||||||||||| || | | |||| | || || | || ||| ||||| ||| ||||| Sbjct 532 GATGATCCCTACCTTATTGACCGCAA-CTTCCGTACTTATTATCACCTTCATCGCTGCTC 590 Query 167206 CTCCTGTGGACATCGATGGTATCCGCGAACCAGTTGCTGGTTCACTCATGTATGGTAACA 167265 |||| || || || |||||||| || || || ||| ||||||| | || ||||| |||| Sbjct 591 CTCCAGTAGATATTGATGGTATTCGTGAGCCTGTTTCTGGTTCTTTAATTTATGGAAACA 650 Query 167266 ACATCATCTCTGGTGCAGTTGTTCCTTCTTCTAATGCTATTGGTCTTCACTTCTATCCCA 167325 || ||||||||||| || ||||| ||| | | || || | || || || || | Sbjct 651 GTATTATCTCTGGTGCTATTATTCCTACTTATGTGACGATCGGATTGCATTTTTACCCAA 710 Query 167326 TCTGGGAAGCAGCAACCCTCGACGAGTGGTTGTACAATGGTGGTCCTTTCCAACTCGTAG 167385 | ||| |||| ||| || | || || ||||| |||||||| ||||||| | || | | Sbjct 711 TTTGGAAAGCTGCATCCGTTGATGAATGGTTATACAATGGCGGTCCTTATGACCTAATTG 770 Query 167386 TTTTCCACTTCCTGATTGGCATCTATGCCTATATGGGTCGTGAGTGGGAACTCTCTTACC 167445 || | || ||| | |||| | | ||||||| |||||| |||||||| || || Sbjct 771 TTCTACATTTCTTACTTGGTGTAGCTTGTTATATGGATCGTGACTGGGAACTTAGTTTCC 830 Query 167446 GTCTCGGTATGCGTCCCTGGATCTGTGTTGCATACTCTGCTCCAGTCGCTGCAGCATCTG 167505 ||| |||||||| | ||||| ||||||||| || ||||| || || | || ||| Sbjct 831 ATCTGGGTATGCGCCTTTGGATTGTTGTTGCATATTCAGCTCCTGTTGCAGTTGCTACTG 890 Query 167506 CTGTATTCCTCGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGACGCGATGCCTCTTGGTA 167565 || | ||| | | || ||| | ||||||| ||| ||||| | |||||| | || | Sbjct 891 CTATTTTCTTGATTTACCCTATTGGTCAAGAAAGTTTTTCTGATGGTATGCCTTTAGGAA 950 Query 167566 TCTCTGGTACATT 167578 | |||||||| || Sbjct 951 TATCTGGTACTTT 963 >seq12572 Length=34890 Score = 176 bits (194), Expect = 5e-39 Identities = 362/532 (68%), Gaps = 6/532 (1%) Strand=Plus/Minus Query 168511 GGGATCGTTTCGTTTTTGTTGGTTGGTCTGGACTTCTTCTTTTTCCCACTGCTTATCTTG 168570 |||| |||||||||||| || |||||| || || | || ||||| ||||||| | | Sbjct 27221 GGGACCGTTTCGTTTTTTTTTTTTGGTCCGGCCTATTGCTCTTTCCTTGTGCTTATTTCG 27162 Query 168571 CTATTGGCGGTTGGCTTACTGGGACTGCTTTCGTCACGAGTTGGTATACTCACGGGTTGG 168630 || || |||| |||| |||||| |||| || || |||||||||| |||| Sbjct 27161 CTTTTTTTTTTTGGTTTACAGGGACTACTTTTGTAACTTCTTGGTATACTTTTTTTTTGG 27102 Query 168631 CAAGTTCCTATCTGGAGGGC-GCAAACTTTCTTA-CTGCGGCAGTTAGTACTCCAGCAGA 168688 | ||||||||| |||| || |||| ||||||| | | || ||||| || | Sbjct 27101 CTAGTTCCTATTTGGAAGGTTGCAA--TTTCTTAACCGTTTTTTTTTCCACTCCTGCCAA 27044 Query 168689 TTCTATGGGTCATTCTCTTCTGCTTCTCTGGGGTCCTGAGGCACAAGGGGATTTCGTCAG 168748 | | | | || ||| | | || | | || || ||||| |||||||| | Sbjct 27043 TAGTTTAGCACACTCTTTGTTACTATTTTTTTTCCCGGAAGCACAGGGGGATTTTACTCG 26984 Query 168749 ATGGTGTCAACTTGGAGGACTCTGGGCTTTTGTGGCGCTCCACGGGGCTTTCGCTCTAAT 168808 ||||||||| || | ||| ||||||| || ||||| |||||||| || ||||| Sbjct 26983 TTGGTGTCAATTTTTTTTTTTGTGGACTTTTGTCGCTCTCCATGGGGCTTTTGCACTAAT 26924 Query 168809 CGGTTTCATGCTTCGTCAGTTTGAACTGGCACG-TCTCATCGGTATCCGTCCCTACAATG 168867 ||| ||| | ||||| |||||||| || || ||| || | | | | |||| Sbjct 26923 TTTTTTTATGTTACGTCAATTTGAACTTGCTCGGTCTGTTCAAT-TGTTTTTTTTTAATG 26865 Query 168868 CTATTGCGTTCTCTGGTCCTATCGCTGTTTTTGTTAGCGTCTTTCTCATCTACCCTCTGG 168927 | ||| | ||||||||||| |||||||||||||| | || || || || || |||| Sbjct 26864 CAATTTCATTCTCTGGTCCGTTCGCTGTTTTTGTTTTTTTTTTCCTTATTTATCCACTGG 26805 Query 168928 GTCAATCGAGTTGGTTTTTCGCTCCATCTTTCGGGGTCTCAGCAATCTTCCGATTCCTTC 168987 | ||||| ||||||| || | | | ||| || || |||| || || |||||| | | Sbjct 26804 GACAATCTGGTTGGTTCTTTGTTTTTTTTTTTGGCGTAGCAGCTATATTTCGATTCATCC 26745 Query 168988 TCTTCCTACAAGGATTCCATAACTGGACACTGAATCCATTTCATATGATGGG 169039 | ||| | || ||||| |||||| | || ||||||||||||||||| Sbjct 26744 TTTTCTTCTTTTTTTTTCATAATTGGACATTAAACCCATTTCATATGATGGG 26693 >seq666 Length=229199 Score = 167 bits (184), Expect = 3e-36 Identities = 184/245 (75%), Gaps = 0/245 (0%) Strand=Plus/Minus Query 169152 ACTCAGGAAGAGGAGACCTATTCAATGGTTACTGCAAACCGTTTCTGGTCTCAGATCTTT 169211 ||||| | || || || ||||||||||||||||| | || || |||||||| |||||| Sbjct 152525 ACTCAAGCTGAAGAAACTTATTCAATGGTTACTGCTTATCGCTTTTGGTCTCAAATCTTT 152466 Query 169212 GGTATTGCGTTCAGTAATAAGAGGTGGTTGCATTTCTTTATGCTGTTTGTTCCTGTTATG 169271 ||| |||| || ||||| | ||||| |||||||||||| | ||||| || || | Sbjct 152465 GGTGTTGCTTTTCTCAATAAAGGCTGGTTACATTTCTTTATGTTATTTGTACCCGTCACC 152406 Query 169272 GGTCTTTGGACAAGTTCCATCGGTATTATTGGTCTTGCTCTCAACCTTCGTGCTTATGAC 169331 ||| | |||| ||| | || || | |||| || ||| | ||||| ||||||| |||| Sbjct 152405 GGTTTATGGATGAGTGCTATTGGCGTAGTTGGCCTGGCTTTGAACCTACGTGCTTGTGAC 152346 Query 169332 TTTGTTTCCCAAGAGATCAGAGCAGCAGAAGATCCAGAGTTTGAGACGTTCTACACCAAG 169391 || ||||||| || ||| ||||| |||||||| || |||||||| ||||| |||| Sbjct 152345 TTCATTTCCCAGGAAATCCATGCAGCGGAAGATCCTGAATTTGAGACTTTCTATGCCAAA 152286 Query 169392 AACAT 169396 || || Sbjct 152285 AATAT 152281 >seq12503 Length=143431 Score = 87.8 bits (96), Expect = 2e-12 Identities = 107/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 168495 GATGACTGGCTTAAACGGGATCGTTTCGTTTTTGTTGGTTGGTCTGGACTTCTTCTTTTT 168554 || |||||| | | |||| |||||||||||| | || | ||| || || | || ||| Sbjct 88091 GACGACTGGTTACGAAGGGACCGTTTCGTTTTTATAGGATTGTCCGGCCTATTGCTCTTT 88150 Query 168555 CCCACTGCTTATCTTGCTATTGGCGGTTGGCTTACTGGGACTGCTTTCGTCACGAGTTGG 168614 || ||||||| | ||| | || |||||| ||| |||||| |||| | || |||| Sbjct 88151 CCTTGTGCTTATTTCGCTTTAGGGGGTTGGTTTATAGGGACTACTTTTATAACTTCTTGG 88210 Query 168615 TATACTCACGGGTTGGCAAGTTCCTA 168640 ||||| || || ||||| |||||||| Sbjct 88211 TATACCCATGGATTGGCTAGTTCCTA 88236 >seq8160 Length=957 Score = 87.8 bits (96), Expect = 2e-12 Identities = 99/133 (74%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 167724 GAAACTGAGTCCCAGAACTATGGTTACAAGTTCGGTCAGGAAGAAGAGACGTATAACATC 167783 |||| |||||| || | |||||||| || | | | ||||||||||| ||||| || Sbjct 326 GAAAATGAGTCTGCTAATGAGGGTTACAAATTTGATTAAGAAGAAGAGACCTATAATATT 385 Query 167784 GTCGCTGCTCATGGTTACTTCGGTCGCCTGATCTTCCAATACGCATCCTTCAACAACTCC 167843 || |||||||||| ||| || ||||| | ||||||||||| | ||||||||||| Sbjct 386 GTGGCTGCTCATGATTATTTTGGTCGATTAATCTTCCAATATCCTAGTTTCAACAACTCT 445 Query 167844 CGCTCGCTGCACT 167856 || || | |||| Sbjct 446 CGTTCTTTACACT 458 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 560485815486400