Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dichanthelium_20oligosanthes_20[genbank_20GCA_5F001633215.2_202016- 09-29] 17,436 sequences; 589,166,415 total letters Query= NC_015287.1 Length=232878 Score E Sequences producing significant alignments: (Bits) Value seq16913 282 6e-71 seq12982 163 4e-35 >seq16913 Length=117496 Score = 282 bits (312), Expect = 6e-71 Identities = 523/759 (69%), Gaps = 34/759 (4%) Strand=Plus/Minus Query 215315 ACTGACAATCGTATCTACGTTGGTTGGTTTGGTGTCCTCATGATTCCTTGCCTCCT---- 215370 || || || ||| | ||| | || ||||| ||||| | ||||| || | ||| | Sbjct 95200 ACCGAAAACCGTCTTTACATCGGATGGTTCGGTGTTTTGATGAT-CCGTACCTTATTAAC 95142 Query 215371 CGCAGCTACCACTTGTTTCATCGTAGCATTCATCGCTGCACCTCCTGTCGATATCGACGG 215430 |||| || ||| | | | |||| | ||||||||||| ||||| || ||||| || || Sbjct 95141 CGCAACTTCCATATTTATTATCG---CCTTCATCGCTGCTCCTCCGGTAGATATTGATGG 95085 Query 215431 AATCAGAGAGCCAGTTGCTGGTTCTTTAATGTATGGTAACAACATCATCTCTGGTGCTGT 215490 || | ||||| ||| || |||||||| | ||| | ||||| || || ||||||||| | Sbjct 95084 TATTCGTGAGCCTGTTTCTAGTTCTTTACTTTATAGAAACAATATTATATCTGGTGCTAT 95025 Query 215491 TGTACCT--AG---------TTCAAAC-------GCAATCGGATTACACTTCTACCCTAT 215532 | | ||| || ||| || ||||||||||| || || ||||| || Sbjct 95024 TATTCCTGCAGAAACTATTATTCCTACTTCTGTGGCAATCGGATTGCATTTTTACCCAAT 94965 Query 215533 CTGGGAAGCAGCAACAGTTGACGAATGGCTCTACAATGGTGGACCTTTCCAACTGGTTAT 215592 ||| || | ||| | ||||| |||||| | || ||| |||| |||| | || || | Sbjct 94964 TTGGAAAACTGCATCTGTTGATGAATGGTTATAAAATTGTGGTCCTTCTGAGCTAATTGT 94905 Query 215593 CTTCCACTTCCTCATTGGTATTTCTGCATACTGCGGAAGACAGTGGG-AACTTTCTTACA 215651 | | || | ||||| | || || || | |||||| ||||| || | Sbjct 94904 TCTATATTTTTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGGAACTTAGTTTCC 94845 Query 215652 GATTAGGTATGAGACCTTGGATCTGTGTTGCTTACTCCGCACCTGTATCTGCTGCCTTTG 215711 | | |||| | | |||||||| | |||| || || || ||| | | ||||| || Sbjct 94844 GTCTGGGTACGCGCCCTTGGATTGCTATTGCATATTCAGCTCCTTTG-CAGCTGCTAGTG 94786 Query 215712 CAGTATTCCTTGTGTA-TCCATTCGGTCAGGGTTCTTTCTCTGATGCTATGCCACTTGGA 215770 | || ||| | || || || ||| ||||| || |||||| |||| | |||| | ||| Sbjct 94785 CTGTTTTCTTGGTTTACTCTATT-GGTCAAGGGAGTTTCTCCGATGGTGTGCCTTTAGGA 94727 Query 215771 ATCTCTGGAACATTCAACTACATGTTTGTTTTCCAGGCTGAGCACAACATTCTGATGCAC 215830 || ||||| | ||||||| || |||| ||||||| ||||||||||| || ||||| Sbjct 94726 ATATCTGGTAT-TTCAACTTTATAATTGTATTCCAGGTAGAGCACAACATCCTTATGCAT 94668 Query 215831 CCATTCCACATGTTAGGTGTGGCTGGTGTCTTCGGTGGTTCATTGTTCTCTGCAATGCAC 215890 |||| |||||||||||| | |||||||| ||||| ||||| || | | ||||| Sbjct 94667 TCATTTCACATGTTAGGTATAGCTGGTGTATTCGGCGGTTCTTTCAGCGTT---ATGCAT 94611 Query 215891 GGTTCACTTGTTACATCTTCTCTAATCAGAGAGACAACTGAGCAAGAATCTCAGAACTAC 215950 ||||| | | || ||| | | ||||| || || ||||| | || ||| || | Sbjct 94610 GGTTCCTTGGCAACCTCTAGTTTGATCAGGGAAACCACTGAAAATGAGTCTGCTAATGAA 94551 Query 215951 GGTTACAAGTTCGGACAAGAGGAGGAAACATACAACATCGTAGCTGCACACGGTTACTTT 216010 |||||||| || || ||||| || || |||| || ||||| ||||| |||||||| ||| Sbjct 94550 GGTTACAAATTTGGTCAAGAAGAAGAGACATGTAATATCGTGGCTGCTCACGGTTATTTT 94491 Query 216011 GGTCGCCTCATCTTCCAATACGCATCTTTCAACAACTCA 216049 ||||| | ||||| ||||| || |||||||||||||| Sbjct 94490 GGTCGATTAATCTTTCAATATGCTACTTTCAACAACTCA 94452 >seq12982 Length=32303 Score = 163 bits (180), Expect = 4e-35 Identities = 320/467 (69%), Gaps = 12/467 (3%) Strand=Plus/Plus Query 215324 CGTATCTACGTTGGTTGGTTTGGTGTCCTCATGATTCCTTGCCTCCT---CGCAGCTACC 215380 ||| | ||| | || ||||||||||| | ||||| ||| | | | |||| || || Sbjct 503 CGTCTTTACATCGGATGGTTTGGTGTTTTGATGATCCCTACCTTATTGACCGCAACTTCC 562 Query 215381 --ACTTGTTTCATCGTAGCATTCATCGCTGCACCTCCTGTCGATATCGACGGAATCAGAG 215438 |||| || ||| | ||||||||||| ||||| || ||||| || || || | | Sbjct 563 GTACTTATT--ATCA---CCTTCATCGCTGCTCCTCCAGTAGATATTGATGGTATTCGTG 617 Query 215439 AGCCAGTTGCTGGTTCTTTAATGTATGGTAACAACATCATCTCTGGTGCTGTTGTACCTA 215498 |||| ||| ||||||||||||| ||||| |||| || |||||||||||| || | |||| Sbjct 618 AGCCTGTTTCTGGTTCTTTAATTTATGGAAACAGTATTATCTCTGGTGCTATTATTCCTA 677 Query 215499 GTTCAAACGCAATCGGATTACACTTCTACCCTATCTGGGAAGCAGCAACAGTTGACGAAT 215558 || | |||||||| || || ||||| || ||| |||| ||| | ||||| |||| Sbjct 678 CTTATGTGACGATCGGATTGCATTTTTACCCAATTTGGAAAGCTGCATCCGTTGATGAAT 737 Query 215559 GGCTCTACAATGGTGGACCTTTCCAACTGGTTATCTTCCACTTCCTCATTGGTATTTCTG 215618 || | |||||||| || |||| | || || | | || ||| | ||||| | || Sbjct 738 GGTTATACAATGGCGGTCCTTATGACCTAATTGTTCTACATTTCTTACTTGGTGTAGCTT 797 Query 215619 CATACTGCGGA-AGACAGTGGGAACTTTCTTACAGATTAGGTATGAGACCTTGGATCTGT 215677 || | ||| | | ||||||||| || | | |||||| | | |||||| | Sbjct 798 GTTA-TATGGATCGTGACTGGGAACTTAGTTTCCATCTGGGTATGCGCCTTTGGATTGTT 856 Query 215678 GTTGCTTACTCCGCACCTGTATCTGCTGCCTTTGCAGTATTCCTTGTGTATCCATTCGGT 215737 ||||| || || || ||||| | | ||| ||| | ||| | | || || | ||| Sbjct 857 GTTGCATATTCAGCTCCTGTTGCAGTTGCTACTGCTATTTTCTTGATTTACCCTATTGGT 916 Query 215738 CAGGGTTCTTTCTCTGATGCTATGCCACTTGGAATCTCTGGAACATT 215784 || | ||| ||||||| |||||| | ||||| ||||| || || Sbjct 917 CAAGAAAGTTTTTCTGATGGTATGCCTTTAGGAATATCTGGTACTTT 963 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 744919209465280