Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dichanthelium_20oligosanthes_20[genbank_20GCA_5F001633215.2_202016- 09-29] 17,436 sequences; 589,166,415 total letters Query= NC_015288.1 Length=191195 Score E Sequences producing significant alignments: (Bits) Value seq16913 289 3e-73 seq10113 255 7e-63 seq12982 161 1e-34 seq666 159 4e-34 seq12572 149 8e-31 seq8160 95.1 1e-14 seq12273 82.4 9e-11 >seq16913 Length=117496 Score = 289 bits (320), Expect = 3e-73 Identities = 542/790 (69%), Gaps = 36/790 (5%) Strand=Plus/Minus Query 181784 GTGGGAACAATTCTGCGAGTGGGTTACATCTACCAACAATCGTCTCTATGTCGGTTGGTT 181843 ||||| || |||||| | ||| | || ||| | || ||||| || |||| ||||| Sbjct 95231 GTGGGGTCACTTCTGCAACTGGATAACTAGCACCGAAAACCGTCTTTACATCGGATGGTT 95172 Query 181844 TGGTGTGCTGATGATCCCAACTCTGTTGGCGGCAAC---CATCTGTTTCATCGTTGCTTT 181900 ||||| ||||||||| || | || | ||||| ||| | | | |||| | || Sbjct 95171 CGGTGTTTTGATGATCCGTACCTTATTAACCGCAACTTCCATATTTATTATCG---CCTT 95115 Query 181901 CGTAGCAGCACCTCCTGTCGATATCGACGGTATCCGCGAACCCGTAGCTGGTTCACTCAT 181960 | | || || ||||| || ||||| || ||||| || || || || || |||| | | Sbjct 95114 CATCGCTGCTCCTCCGGTAGATATTGATGGTATTCGTGAGCCTGTTTCTAGTTCTTTACT 95055 Query 181961 GTATGGTAACAACATCATCTCTGGTGCTGTTGTCCCATCC-----------TCCAAC--- 182006 ||| | ||||| || || ||||||||| || | || | ||| || Sbjct 95054 TTATAGAAACAATATTATATCTGGTGCTATTATTCCTGCAGAAACTATTATTCCTACTTC 94995 Query 182007 ----GCAATTGGTCTTCACTTCTACCCAATCTGGGAAGCTGCCTCACTTGATGAGTGGCT 182062 ||||| || | || || |||||||| ||| || |||| || ||||||| ||| | Sbjct 94994 TGTGGCAATCGGATTGCATTTTTACCCAATTTGGAAAACTGCATCTGTTGATGAATGGTT 94935 Query 182063 GTATAACGGTGGTCCTTTCCAACTGGTTGTTTTCCACTTCCTGATCGGCATCTACGCCT- 182121 || || ||||||||| | || ||||| | | || | | || | || || | Sbjct 94934 ATAAAATTGTGGTCCTTCTGAGCTAATTGTTCTATATTTTTTACTTGG--TGTA-GCTTG 94878 Query 182122 --ACATGGGACGTGAGTGGG-AACTTTCTTACCGCTTAGGTATGCGTCCCTGGATCTGTG 182178 | ||||| |||||||||| ||||| || ||| | |||| ||| || ||||| | Sbjct 94877 TTATATGGGTCGTGAGTGGGGAACTTAGTTTCCGTCTGGGTACGCGCCCTTGGATTGCTA 94818 Query 182179 TAGCATACTCTGCTCCAGTCGCTGCAGCATCTGCTGTATTCTTAGTCTATCCTTTCGGTC 182238 | ||||| || ||||| | || || || |||||| ||||| || || || | |||| Sbjct 94817 TTGCATATTCAGCTCCTTT-GCAGCTGCTAGTGCTGTTTTCTTGGTTTACTCTATTGGTC 94759 Query 182239 AAGGTTCGTTCTCCGATGCAATGCCCCTCGGAATCTCAGGAACATTCAACTATATGTTGG 182298 |||| |||||||||| |||| | ||||| || || | ||||||| ||| | | Sbjct 94758 AAGGGAGTTTCTCCGATGGTGTGCCTTTAGGAATATCTGGTAT-TTCAACTTTATAATTG 94700 Query 182299 TTTTCCAAGCTGAGCACAACATTCTTATGCATCCCTTCCACATGTTGGGTGTAGCAGGTG 182358 | ||||| | ||||||||||| ||||||||| | || |||||||| ||| |||| |||| Sbjct 94699 TATTCCAGGTAGAGCACAACATCCTTATGCATTCATTTCACATGTTAGGTATAGCTGGTG 94640 Query 182359 TATTCGGTGGTTCACTGTTTAGTGCAATGCACGGTTCTTTGGTTACATCTTCACTCGTCC 182418 ||||||| ||||| || || | ||||| ||||| |||| || ||| | || Sbjct 94639 TATTCGGCGGTTCT---TTCAGCGTTATGCATGGTTCCTTGGCAACCTCTAGTTTGATCA 94583 Query 182419 GTGAGACGACTGAGCAAGAGTCACAGAACTATGGTTACAAGTTCGGTCAAGAAGAAGAGA 182478 | || || ||||| | ||||| || | |||||||| || |||||||||||||||| Sbjct 94582 GGGAAACCACTGAAAATGAGTCTGCTAATGAAGGTTACAAATTTGGTCAAGAAGAAGAGA 94523 Query 182479 CCTATAACATCGTTGCAGCCCATGGCTACTTCGGTCGTTTGATCTTCCAATACGCATCAT 182538 | | ||| ||||| || || || || || || ||||| || ||||| ||||| || | | Sbjct 94522 CATGTAATATCGTGGCTGCTCACGGTTATTTTGGTCGATTAATCTTTCAATATGCTACTT 94463 Query 182539 TCAACAACTC 182548 |||||||||| Sbjct 94462 TCAACAACTC 94453 >seq10113 Length=56568 Score = 255 bits (282), Expect = 7e-63 Identities = 471/686 (69%), Gaps = 5/686 (1%) Strand=Plus/Minus Query 183217 TTTGTCTTTGTGGGCTGGTCTGGACTCCTACTTCTTCCCACTGCTTATCTTGCCATTGGC 183276 ||||| ||||| | |||||||| || | || |||| ||||||| |||| | || Sbjct 48533 TTTGTTTTTGTATGATGGTCTGGCCTATTGCTCTTTCCTTGTGCTTATTTTGCTTTAGGG 48474 Query 183277 GGTTGGCTTACTGGCACAGCTTTTGTTACGAGTTGGTATACCCATGGACTTGCTTCTTCC 183336 |||||| |||| || || ||||||| || |||||||||||||||| | | | |||| Sbjct 48473 GGTTGGTTTACAGGRACTACTTTTGTAACTTCTTGGTATACCCATGGATTGGATAGTTCC 48414 Query 183337 TATCTTGAAGG-TGCTAACTTTCTTA-CGGCAGCTGTCTCGACGCCTGCTGACGCTATGG 183394 ||| | ||||| ||| | ||||||| | || || || || |||||| | | | | Sbjct 48413 TATTTGGAAGGATGCAA--TTTCTTAACAGCGGCGGTTATCACTCCTGCTAATAGTTTAG 48356 Query 183395 GTCATTCTCTTCTGTTACTTTGGGGTCCTGAGTCTCAAGGGGACTTTCAACGCTGGTGCC 183454 || ||| | | |||| ||||| | || || ||||| ||| || || || | Sbjct 48355 CACACTCTTTGTTACTACTATGGGGCCTGGAAGAACAGGGGGATTTTACTCGTTGATGTC 48296 Query 183455 AACTTGGGGGACTCTGGAATTTTGTGGCACTCCACGGTGCCTTTGCTCTCATTGGTTTCA 183514 || | || || || |||| |||||| || ||||| || || ||| || || ||||||| Sbjct 48295 AATTAGGTGGTCTGTGGACTTTTGTCGCTCTCCATGGGGCTTTTATGCTAATAGGTTTCA 48236 Query 183515 TGCTTCGACAGTTTGAACTTGCTCGCTTGATTGGTATCCGTCCTTACAATGCTATTGCGT 183574 || | || || ||||||| ||||| | || | || ||||| ||||| ||| | | Sbjct 48235 TGTTACGTCAATTTGAACATGCTCAGTCTGTTCAATTGCGGCCTTATAATGCAATTTCAT 48176 Query 183575 TCTCTGGTCCTATTGCTGTTTTT-GTCAGTGTATTCCTTATCTATCCACTGGGTCAGTCT 183633 ||||| |||| | ||||||| || |||||||||| | |||||| |||| || ||| Sbjct 48175 TCTCTAGTCCAACCATTGTTTTTTGTTTTTGTATTCCTTGTTTATCCAATGGGACAATCT 48116 Query 183634 TCATGGTTCTTTGCACCTAGTTTCGGGGTAGCAGCAATCTTTAGATTCCTATTGTTCCTT 183693 | |||||||| | ||||| || ||| || || ||| |||| | | ||| | Sbjct 48115 GGTTAGTTCTTTGTGCTGAGTTTTGGCATAGAAGTTATATTTCAATTCATCCTTTTCTTC 48056 Query 183694 CAGGGTTTCCACAACTGGACGTTAAACCCCTTCCATATGATGGGAGTTGCTGGTATACTA 183753 || || || | || |||||||||||||| || ||||||||||| ||||| || || || Sbjct 48055 CAAGGATTTCCTAATTGGACGTTAAACCCATTTCATATGATGGGGGTTGCCGGAGTATTA 47996 Query 183754 GGAGGAGCACTACTCAGTGCTATCCATGGTGTCACAGTAGAGAATACATTGTATGAAGAT 183813 || | ||| || || | |||||||||| | || |||| || || | | ||||| Sbjct 47995 GGCGCAGCTCTGCTATGCTCTATCCATGGGGCTACCATAGAAAACACTCTATTCAAAGAT 47936 Query 183814 GGAGAACAAGCAAACACATTCAAGGCATTTGATTCCACTCAAGAAGAAGAGACGTATTCT 183873 | || ||||| || ||| | || | | | | ||||||| ||||| || ||||| Sbjct 47935 GATGATGGTGCAAATACCTTCTATGCTTGTAACGCAACTCAAGCTGAAGAAACTTATTCA 47876 Query 183874 ATGGTTACAGCGAATCGTTTCTGGTC 183899 ||| | || | || | || ||||| Sbjct 47875 ATGATCACTACTAACAGCTTTTGGTC 47850 Score = 161 bits (178), Expect = 1e-34 Identities = 220/305 (72%), Gaps = 3/305 (1%) Strand=Plus/Minus Query 183895 TGGTCACAAATCTTCGGGGTTGCGTTTAGCAATAAGCGTTGGTTGCACTTCTTTATGTTG 183954 ||||| ||||| || || ||| | ||| |||||| |||||||| || ||||||||| | Sbjct 1009 TGGTCCCAAATATTTGGTGTTTCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGCTA 950 Query 183955 TTTGTTCCTGTCATGGGTCTTTGGGTCTCTTCTATTGGCATCATTGGGCTTGCTCTTAAT 184014 |||| | ||| || || | | | | || |||||||| | ||| || ||||| || Sbjct 949 CTTGTACTTGTAATCAGTTTATAGATGACTGCTATTGGC-TAGTTGCCCTGGCTCTGAAC 891 Query 184015 CTTCGTGCTTATGATTTTGTAAGTCAAGAGATCAGAGCAGCAGAAGATCCAGAATTTGAG 184074 || |||| |||||||| | || | ||| | |||||||||||||| ||||||||| Sbjct 890 CTATGTGCCTATGATTTCTTCC--CAGAAAATCCGTGCAGCAGAAGATCCTGAATTTGAG 833 Query 184075 ACGTTCTACACAAAGAACATACTTCTTAATGAAGGACTACGTGCATGGTTAGCACCTTCT 184134 || |||||||| || | || ||| | ||||| || | | ||| ||| | ||| || Sbjct 832 ACTTTCTACACCAAATATATTCTTTTAAATGAGGGTATTCATGCGTGGATGGCAGCTCAG 773 Query 184135 GATCAACCACATGAGAATTTTATATTTCCAGAGGAGGTATTACCTAGAGGCAATGCTCTT 184194 ||||| || ||||| ||| ||||||| || |||||||| |||| | || | ||| || Sbjct 772 GATCAGCCTCATGAAAATCTTATATTCCCTGAGGAGGTTCTACCATGTGGAATCGCTTTT 713 Query 184195 TGATG 184199 | ||| Sbjct 712 TAATG 708 >seq12982 Length=32303 Score = 161 bits (178), Expect = 1e-34 Identities = 318/465 (68%), Gaps = 8/465 (2%) Strand=Plus/Plus Query 181824 CGTCTCTATGTCGGTTGGTTTGGTGTGCTGATGATCCCAACTCTGTTGGCGGCAACCATC 181883 ||||| || |||| ||||||||||| |||||||||| || | ||| | ||||| || Sbjct 503 CGTCTTTACATCGGATGGTTTGGTGTTTTGATGATCCCTACCTTATTGACCGCAACT-TC 561 Query 181884 TGTT-TCATCGTTGCTTTCGTAGCAGCACCTCCTGTCGATATCGACGGTATCCGCGAACC 181942 || | || | | ||| | || || ||||| || ||||| || ||||| || || || Sbjct 562 CGTACTTATTATCACCTTCATCGCTGCTCCTCCAGTAGATATTGATGGTATTCGTGAGCC 621 Query 181943 CGTAGCTGGTTCACTCATGTATGGTAACAACATCATCTCTGGTGCTGTTGTCCCATCCTC 182002 || ||||||| | || ||||| |||| || |||||||||||| || | || | | Sbjct 622 TGTTTCTGGTTCTTTAATTTATGGAAACAGTATTATCTCTGGTGCTATTATTCCTACTTA 681 Query 182003 CAACGCAATTGGTCTTCACTTCTACCCAATCTGGGAAGCTGCCTCACTTGATGAGTGGCT 182062 | || || | || || |||||||| ||| ||||||| || ||||||| ||| | Sbjct 682 TGTGACGATCGGATTGCATTTTTACCCAATTTGGAAAGCTGCATCCGTTGATGAATGGTT 741 Query 182063 GTATAACGGTGGTCCTTTCCAACTGGTTGTTTTCCACTTCCTGATCGGCATCTACGC--- 182119 || || || ||||||| | || ||||| | || ||| | | || | || || Sbjct 742 ATACAATGGCGGTCCTTATGACCTAATTGTTCTACATTTCTTACTTGG--TGTA-GCTTG 798 Query 182120 CTACATGGGACGTGAGTGGGAACTTTCTTACCGCTTAGGTATGCGTCCCTGGATCTGTGT 182179 || |||| ||||| ||||||||| || || | |||||||| | ||||| ||| Sbjct 799 TTATATGGATCGTGACTGGGAACTTAGTTTCCATCTGGGTATGCGCCTTTGGATTGTTGT 858 Query 182180 AGCATACTCTGCTCCAGTCGCTGCAGCATCTGCTGTATTCTTAGTCTATCCTTTCGGTCA 182239 ||||| || ||||| || || | || ||||| | ||||| | || ||| | ||||| Sbjct 859 TGCATATTCAGCTCCTGTTGCAGTTGCTACTGCTATTTTCTTGATTTACCCTATTGGTCA 918 Query 182240 AGGTTCGTTCTCCGATGCAATGCCCCTCGGAATCTCAGGAACATT 182284 || || || |||| ||||| | ||||| || || || || Sbjct 919 AGAAAGTTTTTCTGATGGTATGCCTTTAGGAATATCTGGTACTTT 963 >seq666 Length=229199 Score = 159 bits (176), Expect = 4e-34 Identities = 192/260 (74%), Gaps = 2/260 (1%) Strand=Plus/Minus Query 183850 ACTCAAGAAGAAGAGACGTATTCTATGGTTACAGCGAATCGTTTCTGGTCACAAATCTTC 183909 ||||||| ||||| || ||||| |||||||| || |||| || ||||| |||||||| Sbjct 152525 ACTCAAGCTGAAGAAACTTATTCAATGGTTACTGCTTATCGCTTTTGGTCTCAAATCTTT 152466 Query 183910 GGGGTTGCGTTTAGCAATAAGCGTTGGTTGCACTTCTTTATGTTGTTTGTTCCTGTCATG 183969 || ||||| ||| |||||| | ||||| || ||||||||||| ||||| || |||| Sbjct 152465 GGTGTTGCTTTTCTCAATAAAGGCTGGTTACATTTCTTTATGTTATTTGTACCCGTCACC 152406 Query 183970 GGTCTTTGGGTCTCTTCTATTGGCATCATTGGGCTTGCTCTTAATCTTCGTGCTTATGAT 184029 ||| | ||| | | |||||||| | |||| || ||| | || || ||||||| ||| Sbjct 152405 GGTTTATGGATGAGTGCTATTGGCGTAGTTGGCCTGGCTTTGAACCTACGTGCTTGTGAC 152346 Query 184030 TTTGTAAGTCAAGAGATCAGAGCAGCAGAAGATCCAGAATTTGAGACGTTCTACACAAAG 184089 || | || || ||| ||||| |||||||| ||||||||||| ||||| | | Sbjct 152345 TTCATTTCCCAGGAAATCCATGCAGCGGAAGATCCTGAATTTGAGACTTTCTATGCCA-- 152288 Query 184090 AACATACTTCTTAATGAAGG 184109 || ||| || |||| |||| Sbjct 152287 AAAATATTTTTTAAACAAGG 152268 >seq12572 Length=34890 Score = 149 bits (164), Expect = 8e-31 Identities = 197/272 (72%), Gaps = 6/272 (2%) Strand=Plus/Minus Query 183469 TGGAATTTTGTGGCACTCCACGGTGCCTTTGCTCTCATTGGTTTCATGCTTCGACAGTTT 183528 |||| |||||| || ||||| || || ||||| || ||| ||| ||| | || || ||| Sbjct 26961 TGGACTTTTGTCGCTCTCCATGGGGCTTTTGCACTAATTTTTTTTATGTTACGTCAATTT 26902 Query 183529 GAACTTGCTCGCTTGATTGGTATCCGTCCTTACAATGCTATTGCGTTCTCTGGTCCTATT 183588 ||||||||||| | || | | || ||||| ||| | ||||||||||| | Sbjct 26901 GAACTTGCTCGGTCTGTTCAATTGTTTTTTTTTAATGCAATTTCATTCTCTGGTCCGTTC 26842 Query 183589 GCTGTTTTTGTCAGTGTATTCCTTATCTATCCACTGGGTCAGTCTTCATGGTTCTTTGCA 183648 ||||||||||| | | |||||||| ||||||||||| || ||| |||||||||| Sbjct 26841 GCTGTTTTTGTTTTTTTTTTCCTTATTTATCCACTGGGACAATCTGGTTGGTTCTTTGTT 26782 Query 183649 CCTAGTTTCGGGGTAGCAGCAATCTTTAGATTC---CTATTGTTCCTTCAGGGTTTCCAC 183705 | ||| || |||||||| || ||| ||||| || || ||| || ||| || Sbjct 26781 TTTTTTTTTGGCGTAGCAGCTATATTTCGATTCATCCTTTTCTTCTTTTT---TTTTCAT 26725 Query 183706 AACTGGACGTTAAACCCCTTCCATATGATGGG 183737 || ||||| |||||||| || ||||||||||| Sbjct 26724 AATTGGACATTAAACCCATTTCATATGATGGG 26693 >seq8160 Length=957 Score = 95.1 bits (104), Expect = 1e-14 Identities = 88/112 (79%), Gaps = 0/112 (0%) Strand=Plus/Plus Query 182451 GGTTACAAGTTCGGTCAAGAAGAAGAGACCTATAACATCGTTGCAGCCCATGGCTACTTC 182510 |||||||| || | | ||||||||||||||||||| || || || || |||| || || Sbjct 347 GGTTACAAATTTGATTAAGAAGAAGAGACCTATAATATTGTGGCTGCTCATGATTATTTT 406 Query 182511 GGTCGTTTGATCTTCCAATACGCATCATTCAACAACTCCCGTTCCTTGCACT 182562 ||||| || ||||||||||| | ||||||||||| ||||| || |||| Sbjct 407 GGTCGATTAATCTTCCAATATCCTAGTTTCAACAACTCTCGTTCTTTACACT 458 >seq12273 Length=37008 Score = 82.4 bits (90), Expect = 9e-11 Identities = 75/95 (79%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 182551 GTTCCTTGCACTTCTTCCTTGCTGCATGGCCTGTTGTTGGAATCTGGTTCACCGCACTTG 182610 |||| || ||||||||| | ||||| |||||||| || || ||||||||||| || | | Sbjct 29536 GTTCTTTACACTTCTTCTTGGCTGCTTGGCCTGTAGTAGGGATCTGGTTCACTGCTTTAG 29477 Query 182611 GTGTCTCCACGATGGCATTCAACCTCAACGGTTTC 182645 || | || |||||||||||||| || |||||| Sbjct 29476 GTATTAGTACTATGGCATTCAACCTAAATGGTTTC 29442 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 611562680856800