Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dichanthelium_20oligosanthes_20[genbank_20GCA_5F001633215.2_202016- 09-29] 17,436 sequences; 589,166,415 total letters Query= NC_015289.1 Length=176184 Score E Sequences producing significant alignments: (Bits) Value seq16913 365 5e-96 seq12982 295 8e-75 seq10113 251 8e-62 seq666 178 1e-39 seq12572 145 9e-30 seq12273 100 3e-16 seq11770 93.3 5e-14 >seq16913 Length=117496 Score = 365 bits (404), Expect = 5e-96 Identities = 548/777 (71%), Gaps = 30/777 (4%) Strand=Plus/Minus Query 164764 TTTTGCGAGTGGGTGACTTCCACCAATAACCGTCTTTATGTCGGTTGGTTCGGTGTTCTT 164823 || ||| | ||| | ||| |||| | ||||||||||| |||| |||||||||||| | Sbjct 95221 TTCTGCAACTGGATAACTAGCACCGAAAACCGTCTTTACATCGGATGGTTCGGTGTTTTG 95162 Query 164824 ATGATCC---CCTGTTTGCTCGCCGCTACAATTTGTTTTATTACTGCATTCATCGCTGCT 164880 ||||||| ||| || ||| || | || | |||||| || |||||||||||| Sbjct 95161 ATGATCCGTACCTTATTAACCGCAACTTCCATAT---TTATTATCGCCTTCATCGCTGCT 95105 Query 164881 CCCCCTGTGGACATTGATGGTATTCGTGAACCTGTCGCAGGTTCTCTAATGTACGGTAAC 164940 || || || || ||||||||||||||||| ||||| | ||||| || | || | ||| Sbjct 95104 CCTCCGGTAGATATTGATGGTATTCGTGAGCCTGTTTCTAGTTCTTTACTTTATAGAAAC 95045 Query 164941 AACATCATCTCTGGTGCTGTCGTTCCGTC------------------TTCTAACGCAATC 164982 || || || ||||||||| | |||| | |||| |||||| Sbjct 95044 AATATTATATCTGGTGCTATTATTCCTGCAGAAACTATTATTCCTACTTCTGTGGCAATC 94985 Query 164983 GGACTTCACTTCTATCCTATTTGGGAAGCTGCAACCATGGATGAATGGTTGTACAACGGT 165042 ||| | || || || || |||||| || ||||| | | ||||||||||| || || || Sbjct 94984 GGATTGCATTTTTACCCAATTTGGAAAACTGCATCTGTTGATGAATGGTTATAAAATTGT 94925 Query 165043 GGTCCTTACCAGTTGGTTGTCTTCCACTTCCTCATCGGTGTAGCTTGCTACATGGGTCGT 165102 ||||||| || | |||| | | || | | ||||||||||| || ||||||||| Sbjct 94924 GGTCCTTCTGAGCTAATTGTTCTATATTTTTTACTTGGTGTAGCTTGTTATATGGGTCGT 94865 Query 165103 GAGT-GGGAACTGTCTTACCGCCTCGGTATGCGTCCTTGGATTTGCGTAGCATATAGCGC 165161 |||| ||||||| || ||| || |||| ||| ||||||||| | |||||| || Sbjct 94864 GAGTGGGGAACTTAGTTTCCGTCTGGGTACGCGCCCTTGGATTGCTATTGCATATTCAGC 94805 Query 165162 ACCTGTCGCTGCTGCTGCCGCAGTTTTCCTGGTCTATCCTTTCGGTCAAGGGAGTTTCTC 165221 ||| | || |||||| || |||||| |||| || || | ||||||||||||||||| Sbjct 94804 TCCT-TTGCAGCTGCTAGTGCTGTTTTCTTGGTTTACTCTATTGGTCAAGGGAGTTTCTC 94746 Query 165222 TGATGGTATGCCTCTTGGTATCTCTGGTACTTTTAACTATATGTTCGTCTTCCAAGCAGA 165281 |||||| ||||| | || || ||||||| ||| |||| ||| | || ||||| | ||| Sbjct 94745 CGATGGTGTGCCTTTAGGAATATCTGGTA-TTTCAACTTTATAATTGTATTCCAGGTAGA 94687 Query 165282 ACATAACATTCTTATGCATCCGTTCCACATGCTCGGCGTTGCTGGGGTATTCGGTGGATC 165341 || ||||| ||||||||| | || |||||| | || | ||||| |||||||| || || Sbjct 94686 GCACAACATCCTTATGCATTCATTTCACATGTTAGGTATAGCTGGTGTATTCGGCGGTTC 94627 Query 165342 TCTTTTCTCTGCTATGCATGGAAGTCTTGTTACTTCCTCACTCGTCCGCGAGACAACTGA 165401 |||| | ||||||||| | | || || | || | || || ||||| Sbjct 94626 ---TTTCAGCGTTATGCATGGTTCCTTGGCAACCTCTAGTTTGATCAGGGAAACCACTGA 94570 Query 165402 AACAGAGAGTCAGAACTACGGTTATAAGTTTGGACAAGAAGAAGAGACCTATAACATCGT 165461 || ||| | || | ||||| || ||||| |||||||||||||| | ||| ||||| Sbjct 94569 AAATGAGTCTGCTAATGAAGGTTACAAATTTGGTCAAGAAGAAGAGACATGTAATATCGT 94510 Query 165462 CGCTGCCCACGGGTACTTCGGTCGTCTCATTTTCCAATACGCATCCTTCAACAATTC 165518 ||||| ||||| || || ||||| | || || ||||| || | |||||||| || Sbjct 94509 GGCTGCTCACGGTTATTTTGGTCGATTAATCTTTCAATATGCTACTTTCAACAACTC 94453 >seq12982 Length=32303 Score = 295 bits (326), Expect = 8e-75 Identities = 350/472 (74%), Gaps = 2/472 (0%) Strand=Plus/Plus Query 164784 CACCAATAACCGTCTTTATGTCGGTTGGTTCGGTGTTCTTATGATCCCCTGTTTGCTCGC 164843 |||| | |||||||||| |||| ||||| |||||| | |||||||| || | | Sbjct 493 CACCGAACACCGTCTTTACATCGGATGGTTTGGTGTTTTGATGATCCCTACCTTATTGAC 552 Query 164844 CGCTACAATTTGTT-TTATTACTGCATTCATCGCTGCTCCCCCTGTGGACATTGATGGTA 164902 ||| || | || |||||| | |||||||||||||| || || || |||||||||| Sbjct 553 CGCAACT-TCCGTACTTATTATCACCTTCATCGCTGCTCCTCCAGTAGATATTGATGGTA 611 Query 164903 TTCGTGAACCTGTCGCAGGTTCTCTAATGTACGGTAACAACATCATCTCTGGTGCTGTCG 164962 ||||||| ||||| | |||||| |||| || || |||| || |||||||||||| | Sbjct 612 TTCGTGAGCCTGTTTCTGGTTCTTTAATTTATGGAAACAGTATTATCTCTGGTGCTATTA 671 Query 164963 TTCCGTCTTCTAACGCAATCGGACTTCACTTCTATCCTATTTGGGAAGCTGCAACCATGG 165022 |||| ||| | | |||||| | || || || || |||||| |||||||| || | | Sbjct 672 TTCCTACTTATGTGACGATCGGATTGCATTTTTACCCAATTTGGAAAGCTGCATCCGTTG 731 Query 165023 ATGAATGGTTGTACAACGGTGGTCCTTACCAGTTGGTTGTCTTCCACTTCCTCATCGGTG 165082 |||||||||| ||||| || |||||||| | | |||| | || ||| | | |||| Sbjct 732 ATGAATGGTTATACAATGGCGGTCCTTATGACCTAATTGTTCTACATTTCTTACTTGGTG 791 Query 165083 TAGCTTGCTACATGGGTCGTGAGTGGGAACTGTCTTACCGCCTCGGTATGCGTCCTTGGA 165142 ||||||| || |||| |||||| |||||||| || || || |||||||| | ||||| Sbjct 792 TAGCTTGTTATATGGATCGTGACTGGGAACTTAGTTTCCATCTGGGTATGCGCCTTTGGA 851 Query 165143 TTTGCGTAGCATATAGCGCACCTGTCGCTGCTGCTGCCGCAGTTTTCCTGGTCTATCCTT 165202 || || |||||| || ||||| || | |||| | || ||||| || | || ||| Sbjct 852 TTGTTGTTGCATATTCAGCTCCTGTTGCAGTTGCTACTGCTATTTTCTTGATTTACCCTA 911 Query 165203 TCGGTCAAGGGAGTTTCTCTGATGGTATGCCTCTTGGTATCTCTGGTACTTT 165254 | ||||||| ||||| ||||||||||||||| | || || ||||||||||| Sbjct 912 TTGGTCAAGAAAGTTTTTCTGATGGTATGCCTTTAGGAATATCTGGTACTTT 963 >seq10113 Length=56568 Score = 251 bits (278), Expect = 8e-62 Identities = 487/712 (68%), Gaps = 7/712 (1%) Strand=Plus/Minus Query 166173 GACGACTGGCTTAAACGAGATCGTTTCGTTTTTGTTGGTTGGTCTGGACTTCTTCTTCTT 166232 ||||||| | | | | || | ||| |||||||| | |||||||| || | || || Sbjct 48557 GACGACTTGTTACGAAGGGACCATTTTGTTTTTGTATGATGGTCTGGCCTATTGCTCTTT 48498 Query 166233 CCCACTGCTTATCTTGCTATTGGCGGTTGGCTCACTGGGACTACTTTCGTCACGAGTTGG 166292 || ||||||| ||||| | || |||||| | || || |||||||| || || |||| Sbjct 48497 CCTTGTGCTTATTTTGCTTTAGGGGGTTGGTTTACAGGRACTACTTTTGTAACTTCTTGG 48438 Query 166293 TATACTCATGGACTCGCAAGCAGTTATCTGGAGGG-TGCAAACTTTCTTA-CTGCGGCAG 166350 ||||| |||||| | | || ||| |||| || ||||| ||||||| | ||||| | Sbjct 48437 TATACCCATGGATTGGATAGTTCCTATTTGGAAGGATGCAA--TTTCTTAACAGCGGCGG 48380 Query 166351 TTTCTACTCCAGCAGATGCTATGGGTCATTCTCTACTTCTTCTCTGGGGTCCTGAGGCTC 166410 || ||||| || || | | | || ||| | | || || ||||| | || | | Sbjct 48379 TTATCACTCCTGCTAATAGTTTAGCACACTCTTTGTTACTACTATGGGGCCTGGAAGAAC 48320 Query 166411 AAGGGGATTTCGTCAGGTGGTGCCAACTTGGAGGGCTTTGGGCCTTTGTTGCTCTCCACG 166470 | |||||||| | || || ||| | || || || ||| | ||||| |||||||| | Sbjct 48319 AGGGGGATTTTACTCGTTGATGTCAATTAGGTGGTCTGTGGACTTTTGTCGCTCTCCATG 48260 Query 166471 GTGCTTTTGCCCTAATTGGTTTCATGCTTCGGCAGTTTGAAATCGCTC-GTCTAGTAGGT 166529 | |||||| ||||| ||||||||| | || || |||||| |||| |||| | | Sbjct 48259 GGGCTTTTATGCTAATAGGTTTCATGTTACGTCAATTTGAACATGCTCAGTCTGTTCAAT 48200 Query 166530 ATTCGTCCGTACAATGCAATCGCTTTTTCTGGTCCTATTGCTGTCTTC-GTTAGTGTCTT 166588 | || || || |||||||| | || ||| |||| | ||| || ||| ||| || Sbjct 48199 -TGCGGCCTTATAATGCAATTTCATTCTCTAGTCCAACCATTGTTTTTTGTTTTTGTATT 48141 Query 166589 TCTCATCTACCCTCTGGGTCAATCGAGTTGGTTTTTCGCTCCATCTTTCGGGGTCTCAGC 166648 || | || || |||| ||||| ||| ||| || | | ||| || | || Sbjct 48140 CCTTGTTTATCCAATGGGACAATCTGGTTAGTTCTTTGTGCTGAGTTTTGGCATAGAAGT 48081 Query 166649 AATCTTCCGATTCCTCCTTTTCCTTCAAGGATTCCACAACTGGACACTGAACCCATTTCA 166708 || || | |||| |||||||| | |||||||| | || ||||| | ||||||||||| Sbjct 48080 TATATTTCAATTCATCCTTTTCTTCCAAGGATTTCCTAATTGGACGTTAAACCCATTTCA 48021 Query 166709 TATGATGGGTGTAGCAGGTATTCTCGGTGGTGCATTGCTTTCTGCCATCCATGGTGTTAC 166768 ||||||||| || || || | | || | || |||| | | |||||||| | ||| Sbjct 48020 TATGATGGGGGTTGCCGGAGTATTAGGCGCAGCTCTGCTATGCTCTATCCATGGGGCTAC 47961 Query 166769 AGTAGAGAACACTCTGTATCAAGATGGTGAACAGGCAAATACTTTCAAGGCATTCGACTC 166828 |||| |||||||| | |||||| ||| |||||||| ||| | || | || | Sbjct 47960 CATAGAAAACACTCTATTCAAAGATGATGATGGTGCAAATACCTTCTATGCTTGTAACGC 47901 Query 166829 TACTCAAGAGGAAGAAACCTATTCAATGGTTACAGCAAACCGCTATTGGTCT 166880 ||||||| |||||||| ||||||||| | || | ||| ||| ||||||| Sbjct 47900 AACTCAAGCTGAAGAAACTTATTCAATGATCACTACTAACAGCTTTTGGTCT 47849 Score = 161 bits (178), Expect = 1e-34 Identities = 219/303 (72%), Gaps = 3/303 (1%) Strand=Plus/Minus Query 166875 TGGTCTCAGATCTTCGGTATTGCGTTTAGTAATAAGAGGTGGTTGCATTTCTTTATGCTG 166934 ||||| || || || ||| || | ||| ||||| | ||||| |||||||||||||| Sbjct 1009 TGGTCCCAAATATTTGGTGTTTCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGCTA 950 Query 166935 TTTGTTCCTGTTATGGGTCTGTGGACAAGTTCCATCGGTATTATTGGTCTTGCTCTCAAC 166994 |||| | ||| || || | | || | | | || || | ||| || ||||| ||| Sbjct 949 CTTGTACTTGTAATCAGTTTATAGATGACTGCTATTGGC-TAGTTGCCCTGGCTCTGAAC 891 Query 166995 CTTCGTGCTTATGACTTTGTTTCCCAAGAACTAAGGGCAGCAGAGGATCCTGAGTTTGAA 167054 || |||| ||||| || |||||| || | | |||||||| |||||||| ||||| Sbjct 890 CTATGTGCCTATGATTTC--TTCCCAGAAAATCCGTGCAGCAGAAGATCCTGAATTTGAG 833 Query 167055 ACCTTCTATACCAAGAACATTCTCTTGAATGAGGGTATGCGTTCTTGGATGGCAACTATC 167114 || ||||| ||||| | ||||| || ||||||||||| | | | ||||||||| || Sbjct 832 ACTTTCTACACCAAATATATTCTTTTAAATGAGGGTATTCATGCGTGGATGGCAGCTCAG 773 Query 167115 GATCAACCTCATGAGAGTTTCGTATTCCCTGAAGAGGTTCTTCCTAGAGGTAACGCTCTC 167174 ||||| |||||||| | | | |||||||||| |||||||| || | || | |||| | Sbjct 772 GATCAGCCTCATGAAAATCTTATATTCCCTGAGGAGGTTCTACCATGTGGAATCGCTTTT 713 Query 167175 TAA 167177 ||| Sbjct 712 TAA 710 >seq666 Length=229199 Score = 178 bits (196), Expect = 1e-39 Identities = 187/246 (76%), Gaps = 0/246 (0%) Strand=Plus/Minus Query 166830 ACTCAAGAGGAAGAAACCTATTCAATGGTTACAGCAAACCGCTATTGGTCTCAGATCTTC 166889 ||||||| |||||||| |||||||||||||| || | |||| ||||||||| ||||| Sbjct 152525 ACTCAAGCTGAAGAAACTTATTCAATGGTTACTGCTTATCGCTTTTGGTCTCAAATCTTT 152466 Query 166890 GGTATTGCGTTTAGTAATAAGAGGTGGTTGCATTTCTTTATGCTGTTTGTTCCTGTTATG 166949 ||| |||| ||| ||||| | ||||| |||||||||||| | ||||| || || | Sbjct 152465 GGTGTTGCTTTTCTCAATAAAGGCTGGTTACATTTCTTTATGTTATTTGTACCCGTCACC 152406 Query 166950 GGTCTGTGGACAAGTTCCATCGGTATTATTGGTCTTGCTCTCAACCTTCGTGCTTATGAC 167009 ||| | |||| ||| | || || | |||| || ||| | ||||| ||||||| |||| Sbjct 152405 GGTTTATGGATGAGTGCTATTGGCGTAGTTGGCCTGGCTTTGAACCTACGTGCTTGTGAC 152346 Query 167010 TTTGTTTCCCAAGAACTAAGGGCAGCAGAGGATCCTGAGTTTGAAACCTTCTATACCAAG 167069 || ||||||| ||| | ||||| || |||||||| ||||| || |||||| |||| Sbjct 152345 TTCATTTCCCAGGAAATCCATGCAGCGGAAGATCCTGAATTTGAGACTTTCTATGCCAAA 152286 Query 167070 AACATT 167075 || ||| Sbjct 152285 AATATT 152280 >seq12572 Length=34890 Score = 145 bits (160), Expect = 9e-30 Identities = 355/531 (67%), Gaps = 8/531 (2%) Strand=Plus/Minus Query 166191 GATCGTTTCGTTTTTGTTGGTTGGTCTGGACTTCTTCTTCTTCCCACTGCTTATCTTGCT 166250 || |||||||||||| || |||||| || || | || |||| ||||||| | ||| Sbjct 27219 GACCGTTTCGTTTTTTTTTTTTGGTCCGGCCTATTGCTCTTTCCTTGTGCTTATTTCGCT 27160 Query 166251 ATTGGCGGTTGGCTCACTGGGACTACTTTCGTCACGAGTTGGTATACTCATGGACTCGCA 166310 || |||| | || ||||||||||| || || |||||||||| | | || Sbjct 27159 TTTTTTTTTTGGTTTACAGGGACTACTTTTGTAACTTCTTGGTATACTTTTTTTTTGGCT 27100 Query 166311 AGCAGTTATCTGGAGGGT-GCAAACTTTCTTA-CTGCGGCAGTTTCTACTCCAGCAGATG 166368 || ||| |||| ||| |||| ||||||| | | |||| ||||| || || Sbjct 27099 AGTTCCTATTTGGAAGGTTGCAA--TTTCTTAACCGTTTTTTTTTCCACTCCTGCCAATA 27042 Query 166369 CTATGGGTCATTCTCTACTTCTTCTCTGGGGTCCTGAGGCTCAAGGGGATTTCGTCAGGT 166428 | | | || ||| | | || | | || || || || |||||||| | | Sbjct 27041 GTTTAGCACACTCTTTGTTACTATTTTTTTTCCCGGAAGCACAGGGGGATTTTACTCGTT 26982 Query 166429 GGTGCCAACTTGGAGGGCTTTGGGCCTTTGTTGCTCTCCACGGTGCTTTTGCCCTAATTG 166488 |||| ||| || | ||| | ||||| |||||||| || |||||||| |||||| Sbjct 26981 GGTGTCAATTTTTTTTTTTGTGGACTTTTGTCGCTCTCCATGGGGCTTTTGCACTAATTT 26922 Query 166489 GTTTCATGCTTCGGCAGTTTGAAATCGCTCG-TCTAGT-AGGTATTCGTCCGTACAATGC 166546 ||| ||| | || || |||||| | ||||| ||| | | | || | || |||| Sbjct 26921 TTTTTATGTTACGTCAATTTGAACTTGCTCGGTCTGTTCAATTGTTTTTTTTTA--ATGC 26864 Query 166547 AATCGCTTTTTCTGGTCCTATTGCTGTCTTCGTTAGTGTCTTTCTCATCTACCCTCTGGG 166606 ||| | || |||||||| | ||||| || ||| | | || || || || || ||||| Sbjct 26863 AATTTCATTCTCTGGTCCGTTCGCTGTTTTTGTTTTTTTTTTCCTTATTTATCCACTGGG 26804 Query 166607 TCAATCGAGTTGGTTTTTCGCTCCATCTTTCGGGGTCTCAGCAATCTTCCGATTCCTCCT 166666 ||||| ||||||| || | | | ||| || || |||| || || |||||| |||| Sbjct 26803 ACAATCTGGTTGGTTCTTTGTTTTTTTTTTTGGCGTAGCAGCTATATTTCGATTCATCCT 26744 Query 166667 TTTCCTTCAAGGATTCCACAACTGGACACTGAACCCATTTCATATGATGGG 166717 |||| | || || || |||||| | |||||||||||||||||||| Sbjct 26743 TTTCTTCTTTTTTTTTCATAATTGGACATTAAACCCATTTCATATGATGGG 26693 >seq12273 Length=37008 Score = 100 bits (110), Expect = 3e-16 Identities = 79/95 (83%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 165521 GTTCGCTGCACTTCTTCCTCGCAGCATGGCCTGTAGTTGGTATCTGGTTCACTGCTCTTG 165580 |||| | ||||||||| | || || ||||||||||| || ||||||||||||||| | | Sbjct 29536 GTTCTTTACACTTCTTCTTGGCTGCTTGGCCTGTAGTAGGGATCTGGTTCACTGCTTTAG 29477 Query 165581 GTGTTAGCACCATGGCATTCAACCTGAACGGTTTC 165615 || |||| || |||||||||||||| || |||||| Sbjct 29476 GTATTAGTACTATGGCATTCAACCTAAATGGTTTC 29442 >seq11770 Length=261943 Score = 93.3 bits (102), Expect = 5e-14 Identities = 116/159 (73%), Gaps = 0/159 (0%) Strand=Plus/Plus Query 164857 TTTATTACTGCATTCATCGCTGCTCCCCCTGTGGACATTGATGGTATTCGTGAACCTGTC 164916 ||||||| || |||||||||||||| || || || ||||||||||||||||| |||| Sbjct 78423 TTTATTATCGCCTTCATCGCTGCTCCTCCAGTAGATATTGATGGTATTCGTGAGTTTGTC 78482 Query 164917 GCAGGTTCTCTAATGTACGGTAACAACATCATCTCTGGTGCTGTCGTTCCGTCTTCTAAC 164976 | |||||| || | || | ||||| || |||||| |||| | || | ||||| Sbjct 78483 TCTGGTTCTTTACTTTATAGAAACAATATTATCTCTATTGCTATTATTTCTACTTCTGCA 78542 Query 164977 GCAATCGGACTTCACTTCTATCCTATTTGGGAAGCTGCA 165015 | || | | | || || | || ||||| ||||||||| Sbjct 78543 GGGATTGAATTGCATTTTCACCCAATTTGAGAAGCTGCA 78581 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 563537950128640