Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dichanthelium_20oligosanthes_20[genbank_20GCA_5F001633215.2_202016- 09-29] 17,436 sequences; 589,166,415 total letters Query= NC_015290.1 Length=182180 Score E Sequences producing significant alignments: (Bits) Value seq16913 271 9e-68 seq12982 159 4e-34 >seq16913 Length=117496 Score = 271 bits (300), Expect = 9e-68 Identities = 521/764 (68%), Gaps = 28/764 (4%) Strand=Plus/Minus Query 169699 TGGGTAACAAGCACAAACAACCGCATCTATGTTGGTTGGTTCGGTGTCTTGATGATCCCA 169758 ||| |||| ||||| | ||||| | || | || ||||||||||| |||||||||| Sbjct 95212 TGGATAACTAGCACCGAAAACCGTCTTTACATCGGATGGTTCGGTGTTTTGATGATCCGT 95153 Query 169759 TGTCTATTAGCAGCAGCAACCTGCTTTATCGTTGCTTTCATCGCAGCTCCACCTGTGGAC 169818 ||||| | ||| | || ||||| | || |||||||| ||||| || || || Sbjct 95152 ACCTTATTAACCGCAACTTCCATATTTATTATCGCCTTCATCGCTGCTCCTCCGGTAGAT 95093 Query 169819 ATCGATGGAATCAGAGAACCTGTAGCAGGTTCATTCATGTATGGTAACAACATCATCTCT 169878 || ||||| || | || ||||| | |||| || | ||| | ||||| || || ||| Sbjct 95092 ATTGATGGTATTCGTGAGCCTGTTTCTAGTTCTTTACTTTATAGAAACAATATTATATCT 95033 Query 169879 GGTGCAGTTGTTCCATC-----------TTCAAAC-------GCAATCGGTCTCCACTTC 169920 ||||| || |||| | ||| || |||||||| | || || Sbjct 95032 GGTGCTATTATTCCTGCAGAAACTATTATTCCTACTTCTGTGGCAATCGGATTGCATTTT 94973 Query 169921 TATCCTATTTGGGAAGCAGCAACTCTAGATGAGTGGTTGTATAACGGTGGTCCTTATCAA 169980 || || |||||| || | ||| || | ||||| ||||| || || ||||||||| | | Sbjct 94972 TACCCAATTTGGAAAACTGCATCTGTTGATGAATGGTTATAAAATTGTGGTCCTTCTGAG 94913 Query 169981 TTAGTTATCTTCCACTTCCTTATCGGAATCTCTGCCTACATGGGTAGACAGTGGG-AACT 170039 || || | | | || | | || | || || |||||| | |||||| |||| Sbjct 94912 CTAATTGTTCTATATTTTTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGGAACT 94853 Query 170040 ATCATACCGTTTAGGTATGCGTCCTTGGATCTGTGTAGCATATTCTGCTCCAGTGTCAGC 170099 | |||| | |||| ||| |||||||| | | |||||||| ||||| || |||| Sbjct 94852 TAGTTTCCGTCTGGGTACGCGCCCTTGGATTGCTATTGCATATTCAGCTCCTTTG-CAGC 94794 Query 170100 AGCATTCGCTGTATTCTTAGTGTATCCTTTCGGTCAGGGATCTTTCTCAGACGGAATGCC 170159 || ||||| ||||| || || || | ||||| || |||||| || || |||| Sbjct 94793 TGCTAGTGCTGTTTTCTTGGTTTACTCTATTGGTCAAGGGAGTTTCTCCGATGGTGTGCC 94734 Query 170160 TCTAGGTATCTCAGGTACATTTAACTTCATGTTCGTATTCCAAGCAGAGCACAACATTCT 170219 | |||| || || |||| || ||||| || | |||||||| | |||||||||||| || Sbjct 94733 TTTAGGAATATCTGGTAT-TTCAACTTTATAATTGTATTCCAGGTAGAGCACAACATCCT 94675 Query 170220 TATGCACCCATTCCATATGGCAGGGGTTGCTGGTATGTTCGGAGGAGCACTCTTCTCAGC 170279 |||||| |||| || ||| ||| | |||||| | ||||| || |||| ||||| Sbjct 94674 TATGCATTCATTTCACATGTTAGGTATAGCTGGTGTATTCGGCGGT----TCTT-TCAGC 94620 Query 170280 A--ATGCACGGTTCACTTGTAACATCTTCTCTAATCAGAGAGACAACAGATAACGAGTCA 170337 ||||| ||||| | | ||| ||| | | ||||| || || || || || ||||| Sbjct 94619 GTTATGCATGGTTCCTTGGCAACCTCTAGTTTGATCAGGGAAACCACTGAAAATGAGTCT 94560 Query 170338 CAGAACTATGGATACAAATTCGGACAAGAAGAAGAAACATACAACATTGTTGCAGCACAT 170397 || | || |||||||| || ||||||||||| |||| || || || || || || Sbjct 94559 GCTAATGAAGGTTACAAATTTGGTCAAGAAGAAGAGACATGTAATATCGTGGCTGCTCAC 94500 Query 170398 GGATACTTTGGTAGACTTATCTTCCAATATGCTAGCTTTAACAA 170441 || || |||||| || | ||||| |||||||||| || ||||| Sbjct 94499 GGTTATTTTGGTCGATTAATCTTTCAATATGCTACTTTCAACAA 94456 >seq12982 Length=32303 Score = 159 bits (176), Expect = 4e-34 Identities = 322/478 (67%), Gaps = 0/478 (0%) Strand=Plus/Plus Query 169703 TAACAAGCACAAACAACCGCATCTATGTTGGTTGGTTCGGTGTCTTGATGATCCCATGTC 169762 |||| ||||| | |||| | || | || ||||| ||||| ||||||||||| Sbjct 486 TAACTAGCACCGAACACCGTCTTTACATCGGATGGTTTGGTGTTTTGATGATCCCTACCT 545 Query 169763 TATTAGCAGCAGCAACCTGCTTTATCGTTGCTTTCATCGCAGCTCCACCTGTGGACATCG 169822 |||| | ||| | || |||| | | |||||||| ||||| || || || || | Sbjct 546 TATTGACCGCAACTTCCGTACTTATTATCACCTTCATCGCTGCTCCTCCAGTAGATATTG 605 Query 169823 ATGGAATCAGAGAACCTGTAGCAGGTTCATTCATGTATGGTAACAACATCATCTCTGGTG 169882 |||| || | || ||||| | ||||| || || ||||| |||| || |||||||||| Sbjct 606 ATGGTATTCGTGAGCCTGTTTCTGGTTCTTTAATTTATGGAAACAGTATTATCTCTGGTG 665 Query 169883 CAGTTGTTCCATCTTCAAACGCAATCGGTCTCCACTTCTATCCTATTTGGGAAGCAGCAA 169942 | || |||| ||| | ||||| | || || || || |||||| |||| ||| Sbjct 666 CTATTATTCCTACTTATGTGACGATCGGATTGCATTTTTACCCAATTTGGAAAGCTGCAT 725 Query 169943 CTCTAGATGAGTGGTTGTATAACGGTGGTCCTTATCAATTAGTTATCTTCCACTTCCTTA 170002 | | ||||| ||||| || || || ||||||||| | || || | | || ||| | Sbjct 726 CCGTTGATGAATGGTTATACAATGGCGGTCCTTATGACCTAATTGTTCTACATTTCTTAC 785 Query 170003 TCGGAATCTCTGCCTACATGGGTAGACAGTGGGAACTATCATACCGTTTAGGTATGCGTC 170062 | || | || || |||| | | | |||||||| | || | | |||||||| | Sbjct 786 TTGGTGTAGCTTGTTATATGGATCGTGACTGGGAACTTAGTTTCCATCTGGGTATGCGCC 845 Query 170063 CTTGGATCTGTGTAGCATATTCTGCTCCAGTGTCAGCAGCATTCGCTGTATTCTTAGTGT 170122 |||||| ||| |||||||| ||||| || ||| || ||| | ||||| | | Sbjct 846 TTTGGATTGTTGTTGCATATTCAGCTCCTGTTGCAGTTGCTACTGCTATTTTCTTGATTT 905 Query 170123 ATCCTTTCGGTCAGGGATCTTTCTCAGACGGAATGCCTCTAGGTATCTCAGGTACATT 170180 | ||| | ||||| | | ||| || || || |||||| |||| || || ||||| || Sbjct 906 ACCCTATTGGTCAAGAAAGTTTTTCTGATGGTATGCCTTTAGGAATATCTGGTACTTT 963 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 582720968278400