Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dichanthelium_20oligosanthes_20[genbank_20GCA_5F001633215.2_202016- 09-29] 17,436 sequences; 589,166,415 total letters Query= NC_015569.1 Length=178563 Score E Sequences producing significant alignments: (Bits) Value seq16913 288 1e-72 seq8160 86.0 7e-12 seq12273 84.2 2e-11 >seq16913 Length=117496 Score = 288 bits (318), Expect = 1e-72 Identities = 474/679 (70%), Gaps = 26/679 (4%) Strand=Plus/Plus Query 84204 TTGTTGAAGGAAGCATACTGGAAGATAAGACGACCGAAGTAGCCGTGAGCAGCAACAATA 84263 |||||||| | |||||| || ||||| | ||||| || || ||||||||||| || ||| Sbjct 94456 TTGTTGAAAGTAGCATATTGAAAGATTAATCGACCAAAATAACCGTGAGCAGCCACGATA 94515 Query 84264 TTATAAGTTTCCTCTTCTTGACCGAACTTGTAACCATAGTTTTGTGAGACATTTTCTGTA 84323 ||| | || || ||||||||||| || |||||||| | || || ||||||| || Sbjct 94516 TTACATGTCTCTTCTTCTTGACCAAATTTGTAACCTTCATTAGCAGACTCATTTTCAGTG 94575 Query 84324 GTTTCTCGGATTAGAGAAGAAG-TGACAAGTGAACCATGCATTGCAGAGAATAGAGCTCC 84382 ||||| | ||| | | ||| | || |||| ||||||||||| | ||| || || Sbjct 94576 GTTTCCCTGATCAAACTAGAGGTTGCCAAG-GAACCATGCATAACGCTGAA---AGAACC 94631 Query 84383 ACCGAATACACCAGCAACTCCCAACATGTGAAAGGGATGCATAAGGATGTTATGTTCCGC 84442 |||||||||||||| | || ||||||||||| | ||||||||||||||| || || | Sbjct 94632 GCCGAATACACCAGCTATACCTAACATGTGAAATGAATGCATAAGGATGTTGTGCTCTAC 94691 Query 84443 CTGGAAGACAAGCATGTAGTTGAACGTTCCTGAGATACCAAGTGGCATGCCATCAGAGAA 84502 |||||| |||| || ||||||| | || || || || | |||| ||||| ||||| Sbjct 94692 CTGGAATACAATTATAAAGTTGAA-ATACCAGATATTCCTAAAGGCACACCATCGGAGAA 94750 Query 84503 AGAACCTTGCCCGAAAGGATACACAAGGAATACAGCAGATGCCGCTGCAACTGGAGCAGA 84562 | ||||| || | || || || | ||| |||||| || ||||||| ||||| || Sbjct 94751 ACTCCCTTGACCAATAGAGTAAACCAAGAAAACAGCACTAGCAGCTGCAA-AGGAGCTGA 94809 Query 84563 GTAAGCAACACAGATCCATGGACGCATACCGAGACGATATGAAAGTT-CCCATTCACGAC 84621 || |||| | ||||| || ||| |||| ||||| | ||||| |||| ||||||| Sbjct 94810 ATATGCAATAGCAATCCAAGGGCGCGTACCCAGACGGAAACTAAGTTCCCCACTCACGAC 94869 Query 84622 CCATGTAAGCAAATGCACCAATCAGGAAGTGAAAGACAACAAGTTGATAAGGTCCACCAT 84681 |||| ||| | | |||||| | || | | |||| || | | |||| |||| || Sbjct 94870 CCATATAACAAGCTACACCAAGTAAAAAATATAGAACAATTAGCTCAGAAGGACCACAAT 94929 Query 84682 TATATAGCCATTCGTCCATACTTGCTGCTTCCCAAATAGGATAGAAATGTAGACCAATAG 84741 | |||| |||||| || | | ||| | || |||||| || || ||||| | || || | Sbjct 94930 TTTATAACCATTCATCAACAGATGCAGTTTTCCAAATTGGGTAAAAATGCAATCCGATTG 94989 Query 84742 C-------------ATTAGAG-----GATGGAACTACGGCACCAGAAATGATGTTGTTTC 84783 | || | || | |||| | |||||||| || || ||||||| Sbjct 94990 CCACAGAAGTAGGAATAATAGTTTCTGCAGGAATAATAGCACCAGATATAATATTGTTTC 95049 Query 84784 CGTACATGAGAGAACCAGCGACTGGCTCACGGATACCGTCAATATCAACTGGGGGTGCAC 84843 || | | ||||| || || |||||||| ||||| |||||||| || || || ||| Sbjct 95050 TATAAAGTAAAGAACTAGAAACAGGCTCACGAATACCATCAATATCTACCGGAGGAGCAG 95109 Query 84844 CAACGAATGCAATGATGAA 84862 | | ||| || || || || Sbjct 95110 CGATGAAGGCGATAATAAA 95128 >seq8160 Length=957 Score = 86.0 bits (94), Expect = 7e-12 Identities = 86/112 (77%), Gaps = 0/112 (0%) Strand=Plus/Minus Query 84187 AGTGGAGAGAACGACTATTGTTGAAGGAAGCATACTGGAAGATAAGACGACCGAAGTAGC 84246 |||| | ||||||| |||||||| || ||| |||||||| | ||||| || || Sbjct 458 AGTGTAAAGAACGAGAGTTGTTGAAACTAGGATATTGGAAGATTAATCGACCAAAATAAT 399 Query 84247 CGTGAGCAGCAACAATATTATAAGTTTCCTCTTCTTGACCGAACTTGTAACC 84298 | |||||||| ||||||||||| || || ||||||| | | || |||||||| Sbjct 398 CATGAGCAGCCACAATATTATAGGTCTCTTCTTCTTAATCAAATTTGTAACC 347 >seq12273 Length=37008 Score = 84.2 bits (92), Expect = 2e-11 Identities = 75/94 (80%), Gaps = 0/94 (0%) Strand=Plus/Plus Query 84105 AATCCATTCAGATTAAATGCCATGGTGCTAACACCCAGAGCAGCAAACCAAATGCCAACC 84164 || ||||| || || |||||||| || |||| ||| | ||||| ||||| || || || Sbjct 29443 AAACCATTTAGGTTGAATGCCATAGTACTAATACCTAAAGCAGTGAACCAGATCCCTACT 29502 Query 84165 ACTGGCCAAGCAGCCAAGAAAAAGTGGAGAGAAC 84198 || ||||||||||||||||| ||||| | ||||| Sbjct 29503 ACAGGCCAAGCAGCCAAGAAGAAGTGTAAAGAAC 29536 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571149090918880