Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dichanthelium_20oligosanthes_20[genbank_20GCA_5F001633215.2_202016- 09-29] 17,436 sequences; 589,166,415 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq9737 104 3e-17 seq7477 100 3e-16 >seq9737 Length=173456 Score = 104 bits (114), Expect = 3e-17 Identities = 147/205 (72%), Gaps = 4/205 (2%) Strand=Plus/Plus Query 48360 CCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATACCA 48419 || |||||||| | ||| | |||||||| || |||| | | ||| || ||||| || Sbjct 49272 CCACCTTGATCAACATAACGGGCAGTATCATTGAAAACACGCAGCATAGGAACAATTCCG 49331 Query 48420 TTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTACTAATTGAA 48479 || || | ||||| ||||| ||| ||||| ||| |||||| ||||| ||||| Sbjct 49332 TTAGAAGTTCCATTTGTTCCTCGAATGTAACTCCCAGTAGCTCGAATATTGTGGATTGAG 49391 Query 48480 ATACCTATACCACCTGCCATTTTAGATATTAGAGCACA--CCGTTTAAGGGTATCATAAA 48537 | ||| || || || || ||| ||| | |||||| ||| || |||||||||| Sbjct 49392 ACACCAATTCCTCCAGCAGATTTGCTTATCACAGCACATTCCGAG--AGAGTATCATAAA 49449 Query 48538 TTCCTTCTATACTATCATCTATCAT 48562 |||| || |||||||||||| |||| Sbjct 49450 TTCCCTCAATACTATCATCTTTCAT 49474 >seq7477 Length=85115 Score = 100 bits (110), Expect = 3e-16 Identities = 144/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 48360 CCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATACCA 48419 || |||||||| | ||| | ||||||| || | || | || ||| || ||||| ||| Sbjct 75789 CCACCTTGATCAACATAACGAGCAGTATCATTGAAGACACGTAGCATAGGTACAATTCCA 75730 Query 48420 TTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTACTAATTGAA 48479 || ||| | ||||| ||||| ||| ||||| ||| |||| | ||||| || ||| Sbjct 75729 TTGGATGTTCCATTTGTTCCTCGAATGTAACTCCCAGTAGCACGAATATTGTGAACTGAG 75670 Query 48480 ATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATCATAAATT 48539 | || || || || || ||| ||| | |||||| || || |||||||||||| Sbjct 75669 ACGCCAATTCCTCCAGCAGATTTGCTTATGACAGCACATTCCTTCAGAGTATCATAAATT 75610 Query 48540 CCTTCTATACTATCATCTATCAT 48562 || || ||||| |||||| |||| Sbjct 75609 CCCTCAATACTGTCATCTTTCAT 75587 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 561986288387040