Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dichanthelium_20oligosanthes_20[genbank_20GCA_5F001633215.2_202016- 09-29] 17,436 sequences; 589,166,415 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq1299 134 1e-25 seq4406 116 3e-20 seq9353 109 4e-18 seq11297 102 7e-16 seq12074 93.3 3e-13 seq11181 93.3 3e-13 seq14304 91.5 1e-12 seq13880 89.7 4e-12 seq8403 89.7 4e-12 seq9858 86.0 5e-11 >seq1299 Length=109948 Score = 134 bits (148), Expect = 1e-25 Identities = 520/807 (64%), Gaps = 10/807 (1%) Strand=Plus/Minus Query 551789 TGGAGATTCTCATCTTGGTGGCGAAGATTTTGATAATAGACTGGTATCATGGTGTGTTGA 551848 ||| ||| |||| |||||||| || || || || || | ||||| | ||| | Sbjct 46167 TGGTGATACTCACCTTGGTGGGGAGGACTTCGACAACCGCTTGGTAAACCACTTTGTGCA 46108 Query 551849 AGATTTTAAACGAAAAAACAAAGTTGATCTATCTACATCTGCCAAAGCTCTTCGTCGTCT 551908 ||| ||||| || ||||||||| ||| | || ||| ||| | | | || Sbjct 46107 AGAGTTTAAGCGGAAAAACAAAAAGGATATCACTGGGAACCCCAGGGCTTTGAGAAGGCT 46048 Query 551909 AAGAACTGCTTGCGAAAGAGCCAAACGAGCTCTTTCATCTGGTACTCAAACCACTATTGA 551968 || ||| | || || || || || | | ||||| || | ||||| || ||||| Sbjct 46047 TAGGACTTCATGTGAGAGGGCTAAGAGGACACTTTCTTCCACAGCGCAAACTACGATTGA 45988 Query 551969 AGTAGATTCATTATTTGAGGGAATTGATTATAATACGCCTATTTCGAGGGCCAAATTTGA 552028 | | ||||| | | |||||| ||||||| || | | || | || |||| |||||| Sbjct 45987 AATTGATTCTCTCTATGAGGGCATTGATTTCTATTCCACCATCACCAGAGCCAGATTTGA 45928 Query 552029 AGATATTTGTTCTGATCTCTTTAGAAAAACAATTGAACCAGTAGAACAAGTTT-TAAGAG 552087 || || || || || || || || || || || || |||| | | | Sbjct 45927 GGAACTTAACATGGACCTATTCAGGAAGTGCATGGAGCCTGTGGAG-AAGTGCCTGCGGG 45869 Query 552088 ATTCAAAGATTGATAAATCCAAAGTACATGAAATTGTGCTTGTTGGTGGATCTACAAGAA 552147 || | ||||| ||||| || || ||||| |||| ||||||||||| ||||| |||| Sbjct 45868 ATGCCAAGATGGATAAGAGCACTGTCCATGATGTTGTCCTTGTTGGTGGTTCTACTAGAA 45809 Query 552148 TTCCTAAAATTCGCGAAATG-TTAAGTTCTTATTTCAATGGTAAAAAATTAAATGAAAGT 552206 | || ||| ||| || || | || ||| |||||||| || || | || ||| Sbjct 45808 TCCCCAAAGTTCAGCAACTGCTGCAGGACTT-CTTCAATGGAAAGGAACT--TTGCAAGA 45752 Query 552207 G--TTAATCCAGATGAGGCTGTTGCCTATGGTGCCGCAATTCAAGCAGCTATTCTTTCTG 552264 | | ||||| ||||| |||||||||||||| || || | || || ||||| ||| || Sbjct 45751 GCATCAATCCTGATGAAGCTGTTGCCTATGGCGCTGCGGTCCAGGCTGCTATCCTTAGTG 45692 Query 552265 GACAAACTGATGAAAAACTACAAAATATTGTACTTGTAGATGTTACTCCTCTATCTCTTG 552324 | | |||| || | || | || | || | ||||| || || || ||||||| Sbjct 45691 GTGAGGGCAATGAGAAGGTGCAGGACCTTCTCCTCCTTGATGTGACCCCACTGTCTCTTG 45632 Query 552325 GTTTAGAAACAGTTGGAGGTATTATGACTAATCTTATCGATAGAAATACTACTATTCCTT 552384 || | ||||| | |||||| | |||||| ||||| || || || || ||||| Sbjct 45631 GTCTTGAAACTGCTGGAGGAGTCATGACTGTCCTTATTCCAAGGAACACCACCATTCCAA 45572 Query 552385 GTAAAAAATCTCGTGTATTTTCTACGTATTCAGATAATCAAACTGCTGTTACAATTCAAA 552444 || || | || || || || || || ||||| || ||| ||| || || Sbjct 45571 CCAAGAAGGAGCAGGTCTTCTCCACCTACTCTGATAACCAGCCTGGTGTGTTGATCCAGG 45512 Query 552445 TTTTTGAAGGAGAAAGAAAATTCACTAAAGATAATAATCAACTTGGTACTTTTAATTTAG 552504 ||| ||| || || || | || | || || |||| ||||| | ||| | | Sbjct 45511 TTTATGAGGGCGAGAGGACCCGGACCAGGGACAACAATCTCCTTGGGAAATTTGAGCTCT 45452 Query 552505 AAGGTATTCCTCCTGCTCCTCGTGGAGTACCGCAAATTGAAGT-TACTTTCGATATCGAT 552563 || || || ||||||||| | || || || || || || | |||| || || ||| Sbjct 45451 CTGGAATCCCCCCTGCTCCTAGGGGTGTCCCTCAGATCACTGTATGCTTT-GACATTGAT 45393 Query 552564 GCCAATGGAATTTTGAATGTGACTGCT 552590 |||||||| ||| |||| || ||||| Sbjct 45392 GCCAATGGTATTCTGAACGTCTCTGCT 45366 Score = 116 bits (128), Expect = 3e-20 Identities = 164/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 550310 AAACAATTTTCACCAGAACAAATTTCATCTATGGTTTTAATGAAAATGAAACAAACAGCC 550369 || || || || ||||| ||||||| || |||||| | || || ||| | | || Sbjct 46508 AAGCAGTTCTCCGCAGAAGAAATTTCTTCCATGGTTCTTATCAAGATGCGTGAGATTGCT 46449 Query 550370 AGTGCTTTTGTTGG-TCAAGAAGTTACGGATGCAGTAATAACTGTACCAGCATATTTTAA 550428 |||| |||| |||| | ||| | |||| || | || || || || || || || Sbjct 46448 GAAGCTTACCTTGGATCAACCA-TTAAGAATGCTGTGGTCACCGTTCCTGCTTACTTCAA 46390 Query 550429 TGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCG 550488 ||| || || | || || ||||| |||||||| ||||||||| || ||||| | || Sbjct 46389 TGATTCCCAGAGGCAGGCAACTAAGGATGCTGGTGTTATTGCTGGTCTCAATGTCATGCG 46330 Query 550489 TATTATCAATGAACCTACTGCTGCTGCACTTGCATATGGACTTGATAA 550536 |||||||||||| || |||||||||||| |||| ||||| ||||| || Sbjct 46329 TATTATCAATGAGCCAACTGCTGCTGCAATTGCCTATGGTCTTGACAA 46282 >seq4406 Length=98560 Score = 116 bits (128), Expect = 3e-20 Identities = 122/160 (76%), Gaps = 3/160 (2%) Strand=Plus/Plus Query 550389 AAGTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTA 550448 || |||| | ||||| | || || |||||||| || || || |||||| | ||| | Sbjct 39184 AAATTACAAAAGCAGTGGTTACAGTCCCAGCATACTTCAACGATTCACAAAGGACAGCAA 39243 Query 550449 CTAAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTG 550508 | ||||||||||| |||||||| || || | |||||||||||||| |||||||| |||| Sbjct 39244 CCAAAGATGCTGGCCGTATTGCAGGGCTGGAAGTTCTTCGTATTATTAATGAACCAACTG 39303 Query 550509 CTGCTGCACTTGCATATGGACTTG---ATAAACATAATGA 550545 |||| |||| || ||||| ||| | ||| ||||||| Sbjct 39304 CTGCATCACTGGCCTATGGTTTTGAGAAGAAAAATAATGA 39343 >seq9353 Length=67288 Score = 109 bits (120), Expect = 4e-18 Identities = 107/138 (78%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 550400 GCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCT 550459 ||||| || || || || || || || |||||||||||| | ||| || ||||||||| Sbjct 46128 GCAGTGATCACAGTTCCTGCTTACTTCAATGACTCACAAAGGACAGCAACAAAAGATGCT 46187 Query 550460 GGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTT 550519 || || |||||||| || | ||||| |||||||| ||||| ||||| || || |||| Sbjct 46188 GGCCGAATTGCTGGGCTGGAGGTTCTACGTATTATAAATGAGCCTACAGCGGCATCACTA 46247 Query 550520 GCATATGGACTTGATAAA 550537 |||||||| |||| ||| Sbjct 46248 GCATATGGCTTTGAGAAA 46265 >seq11297 Length=44683 Score = 102 bits (112), Expect = 7e-16 Identities = 100/129 (78%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 550400 GCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCT 550459 ||||| || ||||| ||||| ||||| ||||| | |||||||| || || || |||||| Sbjct 38401 GCAGTGATTACTGTTCCAGCTTATTTCAATGATGCTCAACGTCAGGCCACGAAGGATGCT 38460 Query 550460 GGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTT 550519 || || |||||||| ||| ||||| | || ||||||||||| || || ||||| || Sbjct 38461 GGCCGCATTGCTGGCCTTGATGTTGAGAGGATCATCAATGAACCAACAGCAGCTGCTCTG 38520 Query 550520 GCATATGGA 550528 | |||||| Sbjct 38521 TCTTATGGA 38529 >seq12074 Length=29546 Score = 93.3 bits (102), Expect = 3e-13 Identities = 98/129 (76%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 550400 GCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCT 550459 || || || ||||| |||||||| || ||||| | |||||||| || || || ||||| Sbjct 18587 GCGGTGATCACTGTTCCAGCATACTTCAATGATGCTCAACGTCAGGCCACAAAGGATGCA 18646 Query 550460 GGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTT 550519 || || |||||||| ||| ||||| | || ||||||||||| || || ||||| || Sbjct 18647 GGCCGCATTGCTGGCCTTGATGTTGAAAGGATCATCAATGAACCAACAGCAGCTGCTCTG 18706 Query 550520 GCATATGGA 550528 | |||||| Sbjct 18707 TCCTATGGA 18715 >seq11181 Length=155859 Score = 93.3 bits (102), Expect = 3e-13 Identities = 98/129 (76%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 550409 ACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTATT 550468 || || || || || || || |||||||| | || || || || |||||||| ||| Sbjct 142124 ACAGTTCCGGCCTACTTCAACGACTCACAGAGGCAGGCCACCAAGGATGCTGGGGTGATT 142065 Query 550469 GCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATGGA 550528 ||||| || || ||||| ||||| |||||||| || ||||||||||| |||| ||||| Sbjct 142064 GCTGGCCTCAACGTTCTGCGTATCATCAATGAGCCGACTGCTGCTGCTATTGCCTATGGT 142005 Query 550529 CTTGATAAA 550537 || || ||| Sbjct 142004 CTGGACAAA 141996 >seq14304 Length=24801 Score = 91.5 bits (100), Expect = 1e-12 Identities = 106/143 (74%), Gaps = 4/143 (3%) Strand=Plus/Minus Query 550398 ATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATG 550457 |||| || || ||||| || || | || |||||||| || | || || || || |||| Sbjct 6744 ATGCTGTTATCACTGTCCCTGCCAACTTCAATGACTCTCAGAGGCAGGCCACCAAGGATG 6685 Query 550458 CTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCA- 550516 |||| |||||||| || |||||| ||||| |||||||| || |||||||||||| Sbjct 6684 CTGGGGTGATTGCTGGTCTCAATGTTACGCGTATCATCAATGAGCCGACTGCTGCTGCAT 6625 Query 550517 ---CTTGCATATGGACTTGATAA 550536 |||| ||||| ||||| || Sbjct 6624 GCTATTGCTTATGGTCTTGACAA 6602 >seq13880 Length=133564 Score = 89.7 bits (98), Expect = 4e-12 Identities = 97/129 (75%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 550400 GCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCT 550459 || || || ||||||||||| ||||| ||||| | || || || ||||| || |||||| Sbjct 99200 GCTGTTATTACTGTACCAGCTTATTTCAATGATGCTCAGCGCCAGGCTACCAAGGATGCT 99141 Query 550460 GGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTT 550519 || | ||||||||||| | || | | || ||||| || || |||||||| || || Sbjct 99140 GGTAGGATTGCTGGACTGGAGGTGATGAGGATCATCAACGAGCCCACTGCTGCAGCTCTG 99081 Query 550520 GCATATGGA 550528 |||||||| Sbjct 99080 TCATATGGA 99072 >seq8403 Length=198720 Score = 89.7 bits (98), Expect = 4e-12 Identities = 118/164 (72%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 393992 TCAATGTTATGTTTTGTCACAATTTCATCAAATGTTAAATTCATTGCAATAATTTGTGGT 394051 |||||||||| | || ||| ||||| | |||| | ||||| |||||| | |||| Sbjct 80318 TCAATGTTATATGGAGTGACAGTTTCAGGATATGTCAGATTCAAAGCAATACTCCATGGT 80259 Query 394052 AGTCCCACTTCATTAAGAGCAATATTTGGATCCGAGGTAATAACTGTACGACCTGACATA 394111 | ||| | ||||| || ||||||||||| | || ||||| ||||| |||| | | Sbjct 80258 ACTCCTAATTCATCAATGTTTATATTTGGATCTGGTGTGATAACAGTACGGGCTGAAAAA 80199 Query 394112 TCCACACGTTTTCCCATAAGATTTCCACGAATTCTACCTTCTTT 394155 || ||||| || ||||| | ||||| | ||| | |||||||| Sbjct 80198 TCAACACGCTTGCCCATCAAGTTTCCTCTAATCCGGCCTTCTTT 80155 Score = 87.8 bits (96), Expect = 1e-11 Identities = 104/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 390855 ATTTCTTACGGTACCATCATACTCTACTTTAATGTCTTCTAACATTTTAACTAATTTTCT 390914 ||||||||||||||||||||| | || | ||||| || | || || | | | | Sbjct 82246 ATTTCTTACGGTACCATCATATTTCACCATGATGTCCTCCATAGCCTTCACAAGTCTCCG 82187 Query 390915 TTGGATATAACCAGTGTCTGCAGTTTTAATTGCAGTATTAATAATACCTTCTCTTCCTGC 390974 |||||||| ||||| || | ||| || | ||||||| |||| ||||||||| || | Sbjct 82186 CTGGATATACCCAGTTTCAGAAGTCTTCACAGCAGTATCTATAAGACCTTCTCTACCACC 82127 Query 390975 CATAACTTGGAAGAAAAATTC 390995 |||| | || ||||||||||| Sbjct 82126 CATAGCATGAAAGAAAAATTC 82106 >seq9858 Length=59757 Score = 86.0 bits (94), Expect = 5e-11 Identities = 137/194 (71%), Gaps = 2/194 (1%) Strand=Plus/Minus Query 390803 CAGTATTAATACCATTATCACCATATACACATTGAATTA-ATTTGTCATTGGCATTTCTT 390861 ||| || || |||| || ||||||| | ||||| | || | || || ||||||| Sbjct 39106 CAGCATCCATGCCATCCTCCCCATATAGGAACTGAATGACATCTCCCAA-GGAATTTCTT 39048 Query 390862 ACGGTACCATCATACTCTACTTTAATGTCTTCTAACATTTTAACTAATTTTCTTTGGATA 390921 ||||| |||||||| | || | ||||| || | ||| || | | | ||||||| Sbjct 39047 ACGGTGCCATCATATTTCACCATGATGTCCTCCATAGCTTTCACAAGCCTGCGTTGGATA 38988 Query 390922 TAACCAGTGTCTGCAGTTTTAATTGCAGTATTAATAATACCTTCTCTTCCTGCCATAACT 390981 || ||||| || | ||| || | || |||| ||| | ||||||||| || ||||| | Sbjct 38987 TACCCAGTCTCAGAAGTCTTCACGGCTGTATCAATCAGACCTTCTCTGCCACCCATAGCA 38928 Query 390982 TGGAAGAAAAATTC 390995 || ||||||||||| Sbjct 38927 TGAAAGAAAAATTC 38914 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4028373905683640