Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dichanthelium_20oligosanthes_20[genbank_20GCA_5F001633215.2_202016- 09-29] 17,436 sequences; 589,166,415 total letters Query= NC_016656.1 Length=45890 Score E Sequences producing significant alignments: (Bits) Value seq16913 244 3e-60 seq12982 192 2e-44 >seq16913 Length=117496 Score = 244 bits (270), Expect = 3e-60 Identities = 515/763 (67%), Gaps = 24/763 (3%) Strand=Plus/Minus Query 25811 TGGGTTACAAGTACTGAGAACCGTCTCTATGTGGGATGGTTCGGGGTGCTTATGATACCC 25870 ||| | || || || || |||||||| || | ||||||||||| || | ||||| | Sbjct 95212 TGGATAACTAGCACCGAAAACCGTCTTTACATCGGATGGTTCGGTGTTTTGATGATCCGT 95153 Query 25871 TGCTTACTCGCAGCCACTACATGTTTTATACTTGCCTTCATCGCAGCACCGCCTGTAGAT 25930 |||| | | || ||| | ||||| | ||||||||||| || || || |||||| Sbjct 95152 ACCTTATTAACCGCAACTTCCATATTTATTATCGCCTTCATCGCTGCTCCTCCGGTAGAT 95093 Query 25931 ATAGATGGCATACGTGAGCCAGTTTCCGGCTCGTTAATGTACGGAAACAATATAATATCA 25990 || ||||| || |||||||| ||||| | || ||| | || |||||||||| ||||| Sbjct 95092 ATTGATGGTATTCGTGAGCCTGTTTCTAGTTCTTTACTTTATAGAAACAATATTATATCT 95033 Query 25991 GGAGC----AGTCGTCC-------------CCTCCT-CTAACGCAATCGGACTACATTTT 26032 || || | || | | ||| || || ||||||||| | |||||| Sbjct 95032 GGTGCTATTATTCCTGCAGAAACTATTATTCCTACTTCTGTGGCAATCGGATTGCATTTT 94973 Query 26033 TACCCGATCTGGGAAGCTGGCACACTGGACGAGTGGCTATACAATGGCGGACCATATCAA 26092 ||||| || ||| || ||| | | || || ||| |||| ||| | || || | | | Sbjct 94972 TACCCAATTTGGAAAACTGCATCTGTTGATGAATGGTTATAAAATTGTGGTCCTTCTGAG 94913 Query 26093 CTCATTATCTTCCACTTCTTAATAGGAGTAGCAGCATATGCAGGGAGACAGTGGG-AACT 26151 || ||| | | | || ||| | || ||||| ||| || | |||||| |||| Sbjct 94912 CTAATTGTTCTATATTTTTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGGAACT 94853 Query 26152 ATCTTACAGACTAGGAATGAGACCATGGATATTTGTTGCATATACAGCACCACTATCCGC 26211 || | | || || | | | || ||||| | |||||||| |||| || | | || Sbjct 94852 TAGTTTCCGTCTGGGTACGCGCCCTTGGATTGCTATTGCATATTCAGCTCCTTTG-CAGC 94794 Query 26212 AGCTCTCGCAGTGTTCTTAGTTTATCCTTTCGGACAAGGGAGTTTTAGTGATGGAATGCC 26271 ||| || || ||||| ||||| || | || ||||||||||| ||||| |||| Sbjct 94793 TGCTAGTGCTGTTTTCTTGGTTTACTCTATTGGTCAAGGGAGTTTCTCCGATGGTGTGCC 94734 Query 26272 TCTTGGTATCTCTGGTACTTTTAACTTTATGTTCGTATTCCAAGCAGAACATAATATACT 26331 | | || || ||||||| ||| |||||||| | |||||||| | ||| || || || || Sbjct 94733 TTTAGGAATATCTGGTA-TTTCAACTTTATAATTGTATTCCAGGTAGAGCACAACATCCT 94675 Query 26332 CATGCACCCATTCCATATGGCTGGTGTTGCTGGGGTTTTCGGTGGAGCTCTTTTCGCTGC 26391 ||||| |||| || ||| ||| | ||||| || ||||| | | ||||| || | Sbjct 94674 TATGCATTCATTTCACATGTTAGGTATAGCTGGTGTATTCGGCG--GTTCTTTCAGC-GT 94618 Query 26392 TATGCACGGAAGTTTGGTTACTTCCTCACTTATTGCAGAAACGACAGAGGAAGTCTCACA 26451 |||||| || |||| || || | || ||||| || || | | || Sbjct 94617 TATGCATGGTTCCTTGGCAACCTCTAGTTTGATCAGGGAAACCACTGAAAATGAGTCTGC 94558 Query 26452 GAATTATGGCTATAAGTTTGGGCAAGATGAAGAGACATATAATATTGTCGCTGCACACGG 26511 ||| | || || || ||||| ||||| |||||||||| |||||| || ||||| ||||| Sbjct 94557 TAATGAAGGTTACAAATTTGGTCAAGAAGAAGAGACATGTAATATCGTGGCTGCTCACGG 94498 Query 26512 GTACTTTGGGAGATTAATTTTTCAGTATGCGAGTTTTAATAAC 26554 || ||||| ||||||| ||||| ||||| | ||| || ||| Sbjct 94497 TTATTTTGGTCGATTAATCTTTCAATATGCTACTTTCAACAAC 94455 >seq12982 Length=32303 Score = 192 bits (212), Expect = 2e-44 Identities = 333/480 (69%), Gaps = 8/480 (2%) Strand=Plus/Plus Query 25817 ACAAGTACTGAGAACCGTCTCTATGTGGGATGGTTCGGGGTGCTTATGATACCCTGCTTA 25876 || || || || ||||||| || | |||||||| || || | ||||| || |||| Sbjct 488 ACTAGCACCGAACACCGTCTTTACATCGGATGGTTTGGTGTTTTGATGATCCCTACCTTA 547 Query 25877 CTCGCAGCCACTACATGTTTTATACTTGCCTTCATCGCAGCACCGCCTGTAGATATAGAT 25936 | | || ||| | |||| | |||||||||| || || || |||||||| ||| Sbjct 548 TTGACCGCAACTTCCGTACTTATTATCACCTTCATCGCTGCTCCTCCAGTAGATATTGAT 607 Query 25937 GGCATACGTGAGCCAGTTTCCGGCTCGTTAATGTACGGAAACAATATAATATCAGGAGCA 25996 || || |||||||| ||||| || || ||||| || ||||||| ||| || || || || Sbjct 608 GGTATTCGTGAGCCTGTTTCTGGTTCTTTAATTTATGGAAACAGTATTATCTCTGGTGCT 667 Query 25997 GTCGTCCC--CTCCTCTAACGCAATCGGACTACATTTTTACCCGATCTGGGAAGCTGGCA 26054 | | || || | | ||| |||||| | ||||||||||| || ||| |||||| Sbjct 668 ATTATTCCTACTTATGTGACG--ATCGGATTGCATTTTTACCCAATTTGGAAAGCTGCAT 725 Query 26055 CACTGGACGAGTGGCTATACAATGGCGGACCATATCAACTCATTATCTTCCACTTCTTAA 26114 | | || || ||| ||||||||||||| || ||| | || ||| | | || |||||| Sbjct 726 CCGTTGATGAATGGTTATACAATGGCGGTCCTTATGACCTAATTGTTCTACATTTCTTAC 785 Query 26115 TAGGAGTAGC--AGCATATGCAGGGAGACAGTGGGAACTATCTTACAGACTAGGAATGAG 26172 | || ||||| ||||| | | ||| |||||||| || | || || ||| | Sbjct 786 TTGGTGTAGCTTGTTATATGGATCGTGAC--TGGGAACTTAGTTTCCATCTGGGTATGCG 843 Query 26173 ACCATGGATATTTGTTGCATATACAGCACCACTATCCGCAGCTCTCGCAGTGTTCTTAGT 26232 | ||||| ||||||||||| |||| || | | | ||| || | ||||| | Sbjct 844 CCTTTGGATTGTTGTTGCATATTCAGCTCCTGTTGCAGTTGCTACTGCTATTTTCTTGAT 903 Query 26233 TTATCCTTTCGGACAAGGGAGTTTTAGTGATGGAATGCCTCTTGGTATCTCTGGTACTTT 26292 ||| ||| | || |||| |||||| |||||| |||||| | || || ||||||||||| Sbjct 904 TTACCCTATTGGTCAAGAAAGTTTTTCTGATGGTATGCCTTTAGGAATATCTGGTACTTT 963 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 146696019932064