Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dichanthelium_20oligosanthes_20[genbank_20GCA_5F001633215.2_202016- 09-29] 17,436 sequences; 589,166,415 total letters Query= NC_016657.1 Length=47055 Score E Sequences producing significant alignments: (Bits) Value seq16913 280 4e-71 seq12982 219 1e-52 seq11770 80.6 8e-11 >seq16913 Length=117496 Score = 280 bits (310), Expect = 4e-71 Identities = 524/762 (69%), Gaps = 31/762 (4%) Strand=Plus/Plus Query 36209 AAAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATGTTATA 36268 |||| ||||||| || ||||| | || ||||| || || ||||| || || || ||| | Sbjct 94462 AAAG-TAGCATATTGAAAGATTAATCGACCAAAATAACCGTGAGCAGCCACGATATTACA 94520 Query 36269 CGTCTCTTCTTCTTGGCCGAATTTATATCCATAGTTCTGAGATTCAAGCCCAGTTGTTTC 36328 |||||||||||||| || ||||| || || | || ||| ||| |||| ||||| Sbjct 94521 TGTCTCTTCTTCTTGACCAAATTTGTAACCTTCATTAGCAGACTCATTTTCAGTGGTTTC 94580 Query 36329 ACGAAT--AAGT-GAGGAAGTAACAAGACTTCCGTGCATAGCAGCGAATAAAGCTCCACC 36385 | || || | |||| | | | || || |||||| | ||| || || || Sbjct 94581 CCTGATCAAACTAGAGGTTGCCA-AGGAA--CCATGCATAACGCTGAAAGAA---CCGCC 94634 Query 36386 GAATACCCCTGCAACACCGAGCATATGGAACGGATGCATAAGGATATTGTGTTCTGCCTG 36445 |||||| || || | ||| | ||| || || | |||||||||||| ||||| ||| |||| Sbjct 94635 GAATACACCAGCTATACCTAACATGTGAAATGAATGCATAAGGATGTTGTGCTCTACCTG 94694 Query 36446 AAAGACAAACATAAAATTGAAAGTCCCTGAAATACCAAGAGGCATACCATCAGAGAAACT 36505 || |||| ||||| |||||| | || || || || | ||||| |||||| |||||||| Sbjct 94695 GAATACAATTATAAAGTTGAAA-TACCAGATATTCCTAAAGGCACACCATCGGAGAAACT 94753 Query 36506 CCCTTGTCCAAAAGGGTAGACTAAGAATACAGCAAATGCTGCTGCAACAGGGGCTGAATA 36565 |||||| |||| || ||| || ||||| |||||| || ||||||| ||| |||||||| Sbjct 94754 CCCTTGACCAATAGAGTAAACCAAGAAAACAGCACTAGCAGCTGCAA-AGGAGCTGAATA 94812 Query 36566 AGCTACACATATCCACGGCCTCATACCTAGTCTATAACTAAGTT-CCCATTGTCGTCCCA 36624 || | | ||||| || | | |||| || | ||||||||| |||| | || |||| Sbjct 94813 TGCAATAGCAATCCAAGGGCGCGTACCCAGACGGAAACTAAGTTCCCCACTCACGACCCA 94872 Query 36625 AGTAAGCTGAGATACCAATGAGAAAGTGGAACACAATGAGTTGATATGGTCCTCCGTTAT 36684 ||| | | ||||| | ||| | | ||||| || | | | || || | || | Sbjct 94873 TATAACAAGCTACACCAAGTAAAAAATATAGAACAATTAGCTCAGAAGGACCACAATTTT 94932 Query 36685 ATAACCACTCGTCGAGGGTTGCAGCTTCCCAGATTGGGTAGAAGTGAAGACCGATTGC-- 36742 ||||||| || || | | ||||| || ||| |||||||| || || | |||||||| Sbjct 94933 ATAACCATTCATCAACAGATGCAGTTTTCCAAATTGGGTAAAAATGCAATCCGATTGCCA 94992 Query 36743 -----GTTCGA-----------TGATGGGACGATTGCCCCAGAGATGATGTTGTTTCCAT 36786 || || || || | || || ||||| || || ||||||| || Sbjct 94993 CAGAAGTAGGAATAATAGTTTCTGCAGGAATAATAGCACCAGATATAATATTGTTTCTAT 95052 Query 36787 AGAGTAATGCTCCTGAGACAGGCTCACGAATACCATCTATATCCACGGGAGGCGCAGCAA 36846 | ||||| | | || |||||||||||||||||||| ||||| || ||||| ||||| | Sbjct 95053 AAAGTAAAGAACTAGAAACAGGCTCACGAATACCATCAATATCTACCGGAGGAGCAGCGA 95112 Query 36847 CAAATGCAATTAAAAATGCTGTCACTGCTGTTAAAAGTGCAGGGATCATTAGTACCCCAA 36906 || || || | |||| | ||| ||||| | | | ||||||| | || || | Sbjct 95113 TGAAGGCGATAATAAATATGGAAGTTGCGGTTAATAAGGTACGGATCATCAAAACACCGA 95172 Query 36907 ACCACCCCACATAGAGGCGGTTGTTTGTACTTGTAACCCAGT 36948 |||| || | || || ||||| | || || || | ||||| Sbjct 95173 ACCATCCGATGTAAAGACGGTTTTCGGTGCTAGTTATCCAGT 95214 >seq12982 Length=32303 Score = 219 bits (242), Expect = 1e-52 Identities = 331/466 (71%), Gaps = 6/466 (1%) Strand=Plus/Minus Query 36465 AAAGTCCCTGAAATACCAAGAGGCATACCATCAGAGAAACTCCCTTGTCCAAAAGGGTAG 36524 ||||| || || || || | ||||||||||||||| ||||| |||| |||| |||||| Sbjct 963 AAAGTACCAGATATTCCTAAAGGCATACCATCAGAAAAACTTTCTTGACCAATAGGGTAA 904 Query 36525 ACTAAGAATACAGCAAATGCTGCTGCAACAGGGGCTGAATAAGCTACACATATCCACGGC 36584 | ||||| | |||| || |||||||||| |||||||| || ||| ||||| | Sbjct 903 ATCAAGAAAATAGCAGTAGCAACTGCAACAGGAGCTGAATATGCAACAACAATCCAAAGG 844 Query 36585 CTCATACCTAGTCTATAACTAAGTTCCCATTGTCGTCCCAAGTAAGCTGAGATACCAA-T 36643 | |||||| || ||||||||||||| | || ||| ||| | | ||||| | Sbjct 843 CGCATACCCAGATGGAAACTAAGTTCCCAGTCACGATCCATATAACAAGCTACACCAAGT 784 Query 36644 GAGAAAGTGGAACACAATGAGTTGATATGGTCCTCCGTTATATAACCACTCGTCGAGGGT 36703 ||||| || | ||||| || | ||| || || || || |||||||| || || | || Sbjct 783 AAGAAA-TGTAGAACAATTAGGTCATAAGGACCGCCATTGTATAACCATTCATCAACGGA 725 Query 36704 TGCAGCTTCCCAGATTGGGTAGAAGTGAAGACCGATTGCGTTCGAT--GATGGGACGATT 36761 |||||||| ||| |||||||| || || | ||||| ||| || | || | || Sbjct 724 TGCAGCTTTCCAAATTGGGTAAAAATGCAATCCGAT--CGTCACATAAGTAGGAATAATA 667 Query 36762 GCCCCAGAGATGATGTTGTTTCCATAGAGTAATGCTCCTGAGACAGGCTCACGAATACCA 36821 || |||||||| || |||||||||| | ||| | || || |||||||||||||||||| Sbjct 666 GCACCAGAGATAATACTGTTTCCATAAATTAAAGAACCAGAAACAGGCTCACGAATACCA 607 Query 36822 TCTATATCCACGGGAGGCGCAGCAACAAATGCAATTAAAAATGCTGTCACTGCTGTTAAA 36881 || ||||| || ||||| ||||| | || | || | || | | | ||| || || Sbjct 606 TCAATATCTACTGGAGGAGCAGCGATGAAGGTGATAATAAGTACGGAAGTTGCGGTCAAT 547 Query 36882 AGTGCAGGGATCATTAGTACCCCAAACCACCCCACATAGAGGCGGT 36927 | | ||||||||| | || |||||||| || | || || |||| Sbjct 546 AAGGTAGGGATCATCAAAACACCAAACCATCCGATGTAAAGACGGT 501 >seq11770 Length=261943 Score = 80.6 bits (88), Expect = 8e-11 Identities = 76/97 (78%), Gaps = 0/97 (0%) Strand=Plus/Minus Query 36767 AGAGATGATGTTGTTTCCATAGAGTAATGCTCCTGAGACAGGCTCACGAATACCATCTAT 36826 |||||| || ||||||| ||| ||||| | || |||||| ||||||||||||||| || Sbjct 78518 AGAGATAATATTGTTTCTATAAAGTAAAGAACCAGAGACAAACTCACGAATACCATCAAT 78459 Query 36827 ATCCACGGGAGGCGCAGCAACAAATGCAATTAAAAAT 36863 ||| || ||||| ||||| | || || || | |||| Sbjct 78458 ATCTACTGGAGGAGCAGCGATGAAGGCGATAATAAAT 78422 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 150423248040344