Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dichanthelium_20oligosanthes_20[genbank_20GCA_5F001633215.2_202016- 09-29] 17,436 sequences; 589,166,415 total letters Query= NC_016658.1 Length=47741 Score E Sequences producing significant alignments: (Bits) Value seq16913 244 3e-60 seq12982 176 1e-39 >seq16913 Length=117496 Score = 244 bits (270), Expect = 3e-60 Identities = 529/783 (68%), Gaps = 30/783 (4%) Strand=Plus/Plus Query 5426 TTGTTAAAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATG 5485 ||||| || ||||||| || ||||| | || ||||| || || ||||| || || || Sbjct 94456 TTGTTGAAAGTAGCATATTGAAAGATTAATCGACCAAAATAACCGTGAGCAGCCACGATA 94515 Query 5486 TTATACGTTTCTTCCTCTTGGCCGAATTTATATCCATAGTTCTGAGAAGTAAGCCCAGTT 5545 ||| | || ||||| ||||| || ||||| || || | || ||| | |||| Sbjct 94516 TTACATGTCTCTTCTTCTTGACCAAATTTGTAACCTTCATTAGCAGACTCATTTTCAGTG 94575 Query 5546 GTTTCACGAATGAGCGAAGAAGTAACAAGACTTCCATGCATAGCAGCGAACAAAGCTCCA 5605 ||||| | || | ||| || | | ||||||||| | ||| || || Sbjct 94576 GTTTCCCTGATCAAACTAGAGGTTGCCAAGGAACCATGCATAACGCTGAAAGAA---CCG 94632 Query 5606 CCGAATACCCCAGCAACACCGAGCATGTGGAACGGATGCATAAGGATATTGTGTTCTGCC 5665 |||||||| ||||| | ||| | |||||| || | |||||||||||| ||||| ||| || Sbjct 94633 CCGAATACACCAGCTATACCTAACATGTGAAATGAATGCATAAGGATGTTGTGCTCTACC 94692 Query 5666 TGGAATACGAACATAAAGTTAAAAGTACCAGAGATACCAAGAGGCATACCATCACTGAAA 5725 |||||||| | |||||||| ||| ||||||| || || | ||||| |||||| |||| Sbjct 94693 TGGAATACAATTATAAAGTTGAAA-TACCAGATATTCCTAAAGGCACACCATCGGAGAAA 94751 Query 5726 CTTCCCTGTCCGAAAGGGTATACTAAAAATACTG-AGTAGGCTGCGGCAACCGGTGCTGA 5784 || || || || | || ||| || || || || | | || || || |||| || ||||| Sbjct 94752 CTCCCTTGACCAATAGAGTAAACCAAGAAAACAGCACTA-GCAGCTGCAA-AGGAGCTGA 94809 Query 5785 ATATGCTACGCAAATCCATGGTCGCATTCCTAATCTGTAACTAAGTT-CCCATTGGCGTC 5843 |||||| | |||||| || ||| | || | | | ||||||||| |||| | || | Sbjct 94810 ATATGCAATAGCAATCCAAGGGCGCGTACCCAGACGGAAACTAAGTTCCCCACTCACGAC 94869 Query 5844 CCAAGTAAGCTGCGATACCAATAAGGAAGTGGAAGACGACGAGTTGGTATGGTCCTCCAT 5903 ||| ||| || | ||||| | || | | || | || | | || || | || Sbjct 94870 CCATATAACAAGCTACACCAAGTAAAAAATATAGAACAATTAGCTCAGAAGGACCACAAT 94929 Query 5904 TGTAAAGCCATTCATCGAGATTGGCTGCTTCCCAGATGGGATAGAAGTGTAACCCAATTG 5963 | || | ||||||||| | | || | || ||| || || || || || || || |||| Sbjct 94930 TTTATAACCATTCATCAACAGATGCAGTTTTCCAAATTGGGTAAAAATGCAATCCGATTG 94989 Query 5964 C-------GTTGGA---------GCTG--GGTACAACGGCTCCTGATATGATGTTGTTTC 6005 | || ||| ||| || | || || || ||||| || ||||||| Sbjct 94990 CCACAGAAGTAGGAATAATAGTTTCTGCAGGAATAATAGCACCAGATATAATATTGTTTC 95049 Query 6006 CATAGAGTAGAGATCCTGCGACGGGTTCACGTATGCCGTCGATGTCGACTGGGGGTGCAG 6065 ||| |||| ||| | | || || ||||| || || || || || || || || |||| Sbjct 95050 TATAAAGTAAAGAACTAGAAACAGGCTCACGAATACCATCAATATCTACCGGAGGAGCAG 95109 Query 6066 CTACGAATGCTAATATAAATGCAGTAGTTGCGGTTAAGA--GTGCGGGTATCATTAAGAC 6123 | | ||| || | |||||| | |||||||||||| | || ||| ||||| || || Sbjct 95110 CGATGAAGGCGATAATAAATATGGAAGTTGCGGTTAATAAGGTACGG--ATCATCAAAAC 95167 Query 6124 ACCAAACCACCCCACATAGAGGCGGTTGTTGGTGCTAGTAACCCAGTCACAGAACTTATC 6183 ||| ||||| || | || || ||||| | ||||||||| | ||||| ||||| | | | Sbjct 95168 ACCGAACCATCCGATGTAAAGACGGTTTTCGGTGCTAGTTATCCAGTTGCAGAAGTGACC 95227 Query 6184 CCA 6186 ||| Sbjct 95228 CCA 95230 >seq12982 Length=32303 Score = 176 bits (194), Expect = 1e-39 Identities = 338/494 (68%), Gaps = 6/494 (1%) Strand=Plus/Minus Query 5687 AAAGTACCAGAGATACCAAGAGGCATACCATCACTGAAACTTCCCTGTCCGAAAGGGTAT 5746 ||||||||||| || || | ||||||||||||| |||||| | || || | |||||| Sbjct 963 AAAGTACCAGATATTCCTAAAGGCATACCATCAGAAAAACTTTCTTGACCAATAGGGTAA 904 Query 5747 ACTAAAAATACTG-AGTAGGCTGCGGCAACCGGTGCTGAATATGCTACGCAAATCCATGG 5805 | || || | | ||||| | | ||||| || ||||||||||| || |||||| | Sbjct 903 ATCAAGAAAATAGCAGTAG-CAACTGCAACAGGAGCTGAATATGCAACAACAATCCAAAG 845 Query 5806 TCGCATTCCTAATCTGTAACTAAGTTCCCATTGGCGTCCCAAGTAAGCTGCGATACCAAT 5865 ||||| || | | ||||||||||||| | || ||| ||| || | ||||| Sbjct 844 GCGCATACCCAGATGGAAACTAAGTTCCCAGTCACGATCCATATAACAAGCTACACCAAG 785 Query 5866 AAGGAAGTGGAAGACGACGAGTTGGTATGGTCCTCCATTGTAAAGCCATTCATCGA--GA 5923 | ||| || | || | || | || || || |||||||| | ||||||||| | || Sbjct 784 TAAGAAATGTAGAACAATTAGGTCATAAGGACCGCCATTGTATAACCATTCATCAACGGA 725 Query 5924 TTGGCTGCTTCCCAGATGGGATAGAAGTGTAACCCAATTGCGTTGGAGCTGGGTACAACG 5983 | || |||| ||| || || || || || || || || | | | || | || Sbjct 724 T--GCAGCTTTCCAAATTGGGTAAAAATGCAATCCGATCGTCACATAAGTAGGAATAATA 667 Query 5984 GCTCCTGATATGATGTTGTTTCCATAGAGTAGAGATCCTGCGACGGGTTCACGTATGCCG 6043 || || || || || |||||||||| | || ||| || | || || ||||| || || Sbjct 666 GCACCAGAGATAATACTGTTTCCATAAATTAAAGAACCAGAAACAGGCTCACGAATACCA 607 Query 6044 TCGATGTCGACTGGGGGTGCAGCTACGAATGCTAATATAAATGCAGTAGTTGCGGTTAAG 6103 || || || ||||| || ||||| | ||| | | |||| | | | ||||||||| || Sbjct 606 TCAATATCTACTGGAGGAGCAGCGATGAAGGTGATAATAAGTACGGAAGTTGCGGTCAAT 547 Query 6104 AGTGCGGGTATCATTAAGACACCAAACCACCCCACATAGAGGCGGTTGTTGGTGCTAGTA 6163 | | || ||||| || ||||||||||| || | || || |||| | ||||||||| Sbjct 546 AAGGTAGGGATCATCAAAACACCAAACCATCCGATGTAAAGACGGTGTTCGGTGCTAGTT 487 Query 6164 ACCCAGTCACAGAA 6177 | | ||| ||||| Sbjct 486 ATCTAGTTGCAGAA 473 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 152617993518696