Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dichanthelium_20oligosanthes_20[genbank_20GCA_5F001633215.2_202016- 09-29] 17,436 sequences; 589,166,415 total letters Query= NC_016659.1 Length=47536 Score E Sequences producing significant alignments: (Bits) Value seq16913 262 1e-65 seq12982 201 3e-47 >seq16913 Length=117496 Score = 262 bits (290), Expect = 1e-65 Identities = 521/762 (68%), Gaps = 31/762 (4%) Strand=Plus/Plus Query 25689 AAAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATGTTATA 25748 |||| ||||||| || ||||| | || ||||| || || ||||| || || || ||| | Sbjct 94462 AAAG-TAGCATATTGAAAGATTAATCGACCAAAATAACCGTGAGCAGCCACGATATTACA 94520 Query 25749 CGTCTCTTCTTCTTGGCCGAATTTATATCCATAGTTCTGAGATTCAAGCCCAGTTGTTTC 25808 |||||||||||||| || ||||| || || | || ||| ||| |||| ||||| Sbjct 94521 TGTCTCTTCTTCTTGACCAAATTTGTAACCTTCATTAGCAGACTCATTTTCAGTGGTTTC 94580 Query 25809 ACGAAT--AAGT-GAGGAAGTAACAAGACTTCCGTGCATAGCAGCGAATAAAGCTCCACC 25865 | || || | |||| | | | || || |||||| | ||| || || || Sbjct 94581 CCTGATCAAACTAGAGGTTGCCA-AGGAA--CCATGCATAACGCTGAAAGAA---CCGCC 94634 Query 25866 GAATACCCCTGCAACACCGAGCATATGGAACGGATGCATAAGGATATTGTGTTCTGCCTG 25925 |||||| || || | ||| | ||| || || | |||||||||||| ||||| ||| |||| Sbjct 94635 GAATACACCAGCTATACCTAACATGTGAAATGAATGCATAAGGATGTTGTGCTCTACCTG 94694 Query 25926 AAAGACAAACATAAAATTGAAAGTCCCTGAAATACCAAGAGGCATACCATCAGAGAAACT 25985 || |||| ||||| |||||| | || || || || | ||||| |||||| |||||||| Sbjct 94695 GAATACAATTATAAAGTTGAAA-TACCAGATATTCCTAAAGGCACACCATCGGAGAAACT 94753 Query 25986 CCCTTGTCCAAAAGGGTAGACTAAGAATACAGCAAATGCTGCTGCAACAGGGGCTGAATA 26045 |||||| |||| || ||| || ||||| |||||| || ||||||| ||| |||||||| Sbjct 94754 CCCTTGACCAATAGAGTAAACCAAGAAAACAGCACTAGCAGCTGCAA-AGGAGCTGAATA 94812 Query 26046 AGCTACACATATCCACGGCCTCATGCCTAGTCTATAACTAAGTT-CCCATTGTCGTCCCA 26104 || | | ||||| || | | | || || | ||||||||| |||| | || |||| Sbjct 94813 TGCAATAGCAATCCAAGGGCGCGTACCCAGACGGAAACTAAGTTCCCCACTCACGACCCA 94872 Query 26105 AGTAAGCTGAGATGCCGATGAGAAAGTGGAACACAATAAGTTGATATGGTCCACCGTTAT 26164 ||| | | || | | ||| | | ||||| || | | | || |||| || | Sbjct 94873 TATAACAAGCTACACCAAGTAAAAAATATAGAACAATTAGCTCAGAAGGACCACAATTTT 94932 Query 26165 ACAACCACTCGTCGAGGGTTGCAGCTTCCCAGATTGGGTAGAAGTGAAGACCGATTGC-- 26222 | ||||| || || | | ||||| || ||| |||||||| || || | |||||||| Sbjct 94933 ATAACCATTCATCAACAGATGCAGTTTTCCAAATTGGGTAAAAATGCAATCCGATTGCCA 94992 Query 26223 -----GT--------TAG---ATGACGGGACGATTGCCCCTGAGATGATGTTGTTTCCAT 26266 || ||| || || | || || || || || || ||||||| || Sbjct 94993 CAGAAGTAGGAATAATAGTTTCTGCAGGAATAATAGCACCAGATATAATATTGTTTCTAT 95052 Query 26267 AGAGTAATGCTCCTGAGACAGGCTCACGAATACCATCTATATCCACGGGAGGCGCAGCAA 26326 | ||||| | | || |||||||||||||||||||| ||||| || ||||| ||||| | Sbjct 95053 AAAGTAAAGAACTAGAAACAGGCTCACGAATACCATCAATATCTACCGGAGGAGCAGCGA 95112 Query 26327 CAAATGCAATTAAAAATGCTGTCACTGCTGTTAAAAGTGCAGGGATCATTAGTACCCCAA 26386 || || || | |||| | ||| ||||| | | | ||||||| | || || | Sbjct 95113 TGAAGGCGATAATAAATATGGAAGTTGCGGTTAATAAGGTACGGATCATCAAAACACCGA 95172 Query 26387 ACCACCCCACATAGAGGCGGTTGTTTGTACTTGTAACCCAGT 26428 |||| || | || || ||||| | || || || | ||||| Sbjct 95173 ACCATCCGATGTAAAGACGGTTTTCGGTGCTAGTTATCCAGT 95214 >seq12982 Length=32303 Score = 201 bits (222), Expect = 3e-47 Identities = 327/466 (70%), Gaps = 6/466 (1%) Strand=Plus/Minus Query 25945 AAAGTCCCTGAAATACCAAGAGGCATACCATCAGAGAAACTCCCTTGTCCAAAAGGGTAG 26004 ||||| || || || || | ||||||||||||||| ||||| |||| |||| |||||| Sbjct 963 AAAGTACCAGATATTCCTAAAGGCATACCATCAGAAAAACTTTCTTGACCAATAGGGTAA 904 Query 26005 ACTAAGAATACAGCAAATGCTGCTGCAACAGGGGCTGAATAAGCTACACATATCCACGGC 26064 | ||||| | |||| || |||||||||| |||||||| || ||| ||||| | Sbjct 903 ATCAAGAAAATAGCAGTAGCAACTGCAACAGGAGCTGAATATGCAACAACAATCCAAAGG 844 Query 26065 CTCATGCCTAGTCTATAACTAAGTTCCCATTGTCGTCCCAAGTAAGCTGAGATGCCGA-T 26123 | ||| || || ||||||||||||| | || ||| ||| | | || | | Sbjct 843 CGCATACCCAGATGGAAACTAAGTTCCCAGTCACGATCCATATAACAAGCTACACCAAGT 784 Query 26124 GAGAAAGTGGAACACAATAAGTTGATATGGTCCACCGTTATACAACCACTCGTCGAGGGT 26183 ||||| || | ||||| || | ||| || || || || || ||||| || || | || Sbjct 783 AAGAAA-TGTAGAACAATTAGGTCATAAGGACCGCCATTGTATAACCATTCATCAACGGA 725 Query 26184 TGCAGCTTCCCAGATTGGGTAGAAGTGAAGACCGATTGCGTTAGATGAC--GGGACGATT 26241 |||||||| ||| |||||||| || || | ||||| ||| | || | || | || Sbjct 724 TGCAGCTTTCCAAATTGGGTAAAAATGCAATCCGAT--CGTCACATAAGTAGGAATAATA 667 Query 26242 GCCCCTGAGATGATGTTGTTTCCATAGAGTAATGCTCCTGAGACAGGCTCACGAATACCA 26301 || || ||||| || |||||||||| | ||| | || || |||||||||||||||||| Sbjct 666 GCACCAGAGATAATACTGTTTCCATAAATTAAAGAACCAGAAACAGGCTCACGAATACCA 607 Query 26302 TCTATATCCACGGGAGGCGCAGCAACAAATGCAATTAAAAATGCTGTCACTGCTGTTAAA 26361 || ||||| || ||||| ||||| | || | || | || | | | ||| || || Sbjct 606 TCAATATCTACTGGAGGAGCAGCGATGAAGGTGATAATAAGTACGGAAGTTGCGGTCAAT 547 Query 26362 AGTGCAGGGATCATTAGTACCCCAAACCACCCCACATAGAGGCGGT 26407 | | ||||||||| | || |||||||| || | || || |||| Sbjct 546 AAGGTAGGGATCATCAAAACACCAAACCATCCGATGTAAAGACGGT 501 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 151962129345136