Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dichanthelium_20oligosanthes_20[genbank_20GCA_5F001633215.2_202016- 09-29] 17,436 sequences; 589,166,415 total letters Query= NC_018504.1 Length=123876 Score E Sequences producing significant alignments: (Bits) Value seq12418 98.7 8e-16 seq9352 87.8 1e-12 seq9492 84.2 2e-11 >seq12418 Length=36051 Score = 98.7 bits (108), Expect = 8e-16 Identities = 143/202 (71%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 101267 TGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGC 101326 || ||||| || || || || || ||||| || || | || | | |||| || | ||| Sbjct 33574 TGGAGGGTGGACTCCTTCTGAATGTTGTAGTCAGCCAAGGTACGGCCATCCTCAAGCTGC 33633 Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386 || || || || ||||| ||||| || || || || || ||||| || || | ||| || Sbjct 33634 TTGCCAGCGAAGATCAACCGCTGCTGGTCCGGAGGGATACCTTCCTTGTCCTAAATCTTC 33693 Query 101387 TGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTT 101446 |||||| | || | ||||||||| | || ||||||||||| | || ||||| || Sbjct 33694 GCCTTTACATTATCGATAGTGTCAGAGGACTCGACTTCAAGAGTAATAGTCTTGCCAGTG 33753 Query 101447 AAAGTTTTTACAAATATCTGCA 101468 | || || || || ||||||| Sbjct 33754 AGGGTCTTGACGAAAATCTGCA 33775 Score = 89.7 bits (98), Expect = 4e-13 Identities = 142/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 101267 TGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGC 101326 || || | ||| || || || || ||||| || || | || | | || || | || | Sbjct 33120 TGGAGTGGAGACTCCTTCTGGATGTTGTAGTCCGCCAGGGTGCGTCCGTCCTCAAGTTCC 33179 Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386 ||||| ||||| || | ||||| || || ||||| ||||| || || || || || || Sbjct 33180 TTACCAGCAAAGATTAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCCTGGATCTTC 33239 Query 101387 TGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTT 101446 || ||| | || | ||||||||||| ||||| || || |||| || || | ||| Sbjct 33240 GCCTTCACATTGTCAATAGTGTCAGACGACTCCACCTCCAGGGTGATGGTCTTTCTGGTC 33299 Query 101447 AAAGTTTTTACAAATATCTGCATG 101470 | || || ||||| ||||||||| Sbjct 33300 AGGGTCTTCACAAAGATCTGCATG 33323 >seq9352 Length=67289 Score = 87.8 bits (96), Expect = 1e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 101267 TGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGC 101326 || ||||| ||||| || || || ||||| || |||| || | | | || || | ||| Sbjct 47403 TGGAGGGTGGATTCCTTCTGGATGTTGTAGTCAGCGAGGGTGCGGCCGTCCTCAAGCTGC 47462 Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386 || || ||||| || | | ||| || || || ||||||||||| || || || || || Sbjct 47463 TTGCCAGCAAAGATGAGCCTCTGCTGGTCAGGGGGAATGCCTTCCTTGTCCTGGATCTTA 47522 Query 101387 TGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTT 101446 || ||| | || | ||||| || | || || || || |||| || |||||||| Sbjct 47523 GCCTTGACATTGTCGATGGTGTCCGAGGACTCGACCTCGAGGGTGATGGTCTTGCCGGTG 47582 Query 101447 AAAGTTTTTACAAATATCTGCAT 101469 | || || || || |||||||| Sbjct 47583 AGGGTCTTAACGAAGATCTGCAT 47605 >seq9492 Length=177167 Score = 84.2 bits (92), Expect = 2e-11 Identities = 91/121 (75%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 101261 ACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCC 101320 || |||||||| || || || || || || ||||| || || | ||||| |||| ||| Sbjct 137941 ACCAAATGAAGTGTTGACTCCTTCTGGATGTTGTAGTCAGCTAATGTTCTCCCATCTTCC 138000 Query 101321 AATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGA 101380 ||||||||||| ||||| |||| | || || || || |||||||| || || || ||| Sbjct 138001 AATTGCTTACCAGCAAAAATCAGCCTTTGCTGGTCTGGGGGAATGCCCTCCTTGTCCTGA 138060 Query 101381 A 101381 | Sbjct 138061 A 138061 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396194190344652