Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dichanthelium_20oligosanthes_20[genbank_20GCA_5F001633215.2_202016- 09-29] 17,436 sequences; 589,166,415 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq12004 114 1e-20 seq12320 105 5e-18 seq12880 96.9 3e-15 seq11548 96.9 3e-15 seq12936 93.3 3e-14 seq12418 93.3 3e-14 seq8841 86.0 5e-12 seq9492 84.2 2e-11 seq11736 82.4 6e-11 seq8693 82.4 6e-11 >seq12004 Length=146743 Score = 114 bits (126), Expect = 1e-20 Identities = 156/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || || | |||||| || || ||| ||| || || || || ||||| | || | ||| Sbjct 145616 AGACGGAGCACCAAGTGCAGGGTGGACTCCTTCTGTATGTTATAATCCGCGAGTGTGCGA 145557 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 |||| |||| |||||| ||||| || || || ||||| || |||| || | ||||||| Sbjct 145556 CCGTCCTCCAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCCGGCGGGATGCCCTCC 145497 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| ||||| || ||| | | | | || |||| ||||||||||| || Sbjct 145496 TTGTCTTGGATCTTCGCCTTCACATTATCGATTGTATCAGACGACTCCACCTCCAGGGTG 145437 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || ||||| ||||| || || ||||| |||||||| Sbjct 145436 ATGGTCTTTCCGGTCAAGGTCTTCACAAAGATCTGCAT 145399 Score = 105 bits (116), Expect = 5e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 48539 GCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGA 48598 ||| ||||| || | | ||| | || || ||| |||||| ||||| ||||| |||| Sbjct 145398 GCCTCCCCTCAGTCTGAGCACAAGGTGAAGGGTGGACTCTTTCTGAATGTTGTAGTCAGC 145339 Query 48599 TAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGG 48658 || | ||| | || || | |||||| || || || || || ||||| || |||| || Sbjct 145338 TAAGGTGCGACCATCCTCAAGCTGCTTCCCCGCGAAGATGAGACGCTGCTGGTCCGGTGG 145279 Query 48659 AACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCAC 48718 || |||||||||||| |||||| || ||| | | | ||||| | ||| || Sbjct 145278 AATGCCCTCCTTGTCCTGAATCTTCGCCTTCACATTGTCGATTGTGTCTGAGGACTCAAC 145219 Query 48719 CTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 ||| | || || || ||||| ||||| || || ||||| |||||||| Sbjct 145218 CTCTAGTGTGATGGTCTTTCCAGTCAAGGTCTTCACAAAGATCTGCAT 145171 >seq12320 Length=36718 Score = 105 bits (116), Expect = 5e-18 Identities = 163/233 (70%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 48538 CGCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAG 48597 ||||||| | || || | ||||| || ||||| ||| || || || ||||| || | Sbjct 5377 CGCCGCCGCGGAGGCGGAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGG 5318 Query 48598 ATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGG 48657 || | || ||||| |||| |||||| || || || || || ||||| || |||| | Sbjct 5317 CCAGCGTGCGCTCGTCCTCCAGCTGCTTCCCCGCGAAGATGAGCCGCTGCTGGTCCGGCG 5258 Query 48658 GAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCA 48717 | | ||||||||||| | ||| || || |||| | || |||||||||| Sbjct 5257 GGATCCCCTCCTTGTCCTGCACCTTGGCCTTCACGTTTGCCACCGTGTCCGACGCCTCCA 5198 Query 48718 CCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATCGTG 48770 |||||| ||| ||||| || ||||| | || || || || ||||||||| || Sbjct 5197 CCTCCAGCGTGATCGTCTTGCCCGTGAGCGTCTTCACGAAGATCTGCATCTTG 5145 >seq12880 Length=140709 Score = 96.9 bits (106), Expect = 3e-15 Identities = 161/233 (69%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 48538 CGCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAG 48597 |||| || | || || | ||||| || || ||| ||| || || || ||||| || | Sbjct 18809 CGCCACCGCGGAGGCGGAGCACCAGGTGGAGTGTGGACTCCTTCTGGATGTTGTAGTCGG 18868 Query 48598 ATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGG 48657 || | || |||| || | |||||| ||||| || || || ||||| || |||| | Sbjct 18869 CGAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGCCGCTGCTGGTCCGGCG 18928 Query 48658 GAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCA 48717 | | ||||||||| || |||||| ||| || | | | || || | ||||| Sbjct 18929 GGATGCCCTCCTTATCCTGAATCTTGGCTTTCACGTTGTCGATGGTGTCCGAGGACTCCA 18988 Query 48718 CCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATCGTG 48770 |||||| ||| || || |||||||||| || || || || ||||||||| || Sbjct 18989 CCTCCAACGTGATGGTCTTTCCCGTCAGGGTCTTCACGAAGATCTGCATCTTG 19041 >seq11548 Length=265335 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 || ||||| || || | ||||| || || |||||||| || || || ||||| || | Sbjct 39570 CCACCCCTCAGGCGGAGCACCAGGTGGAGAGTGCTCTCCTTCTGGATGTTGTAGTCTGCA 39511 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 || | || | || |||| ||||| || ||||| ||||| ||||| || |||| |||| Sbjct 39510 AGGGTGCGGCCATCCTCCAGTTGCTTGCCAGCAAAAATCAGGCGCTGCTGGTCCGGGGGA 39451 Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719 | |||||||||||| ||||| || || | | | || || ||| ||| Sbjct 39450 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCAATGGTGTCAGAGCTCTCAACC 39391 Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATC 48767 |||| ||||| ||||| || || | || || || || ||||||||| Sbjct 39390 TCCAAGGTAATGGTTTTGCCAGTGAGGGTCTTCACGAAGATCTGCATC 39343 Score = 89.7 bits (98), Expect = 4e-13 Identities = 151/219 (69%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || || | ||||| || || ||| ||| || || || ||||| || | || | || Sbjct 39789 AGACGGAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGG 39730 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || |||| |||||| |||||||||||||| ||||| || |||| ||| | ||||||| Sbjct 39729 CCATCCTCCAGCTGCTTGCCGGCAAATATCAGACGCTGCTGGTCCGGGGGGATGCCCTCC 39670 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| || || || || | | | || || ||| ||||||| || Sbjct 39669 TTGTCCTGGATTTTGGCCTTCACGTTGTCAATGGTGTCGGAGCTCTCAACCTCCAGAGTG 39610 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATC 48767 || || || || ||||| || || ||||| ||||||||| Sbjct 39609 ATGGTCTTGCCAGTCAAGGTCTTCACAAAGATCTGCATC 39571 Score = 87.8 bits (96), Expect = 1e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 || ||||| || || | ||||| || || |||||||| || || || ||||| |||| Sbjct 38874 CCACCCCTGAGACGGAGCACCAGGTGGAGGGTGCTCTCCTTCTGGATGTTGTAGTCAGCA 38815 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 || | || | || || | |||||| ||||| || || || ||||| || || | || Sbjct 38814 AGCGTGCGCCCATCCTCGAGCTGCTTGCCGGCGAAGATGAGCCGCTGCTGGTCTGGAGGG 38755 Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719 | |||||||||||| ||||| || ||| | | | || || | ||||||| Sbjct 38754 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGACATTGTCGATGGTGTCAGAAGACTCCACC 38695 Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATC 48767 || | || || || || || || | || || ||||| ||||||||| Sbjct 38694 TCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTAACAAAGATCTGCATC 38647 >seq12936 Length=140512 Score = 93.3 bits (102), Expect = 3e-14 Identities = 152/219 (69%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || |||| || | ||| || ||| || || || || |||||||| | || | || Sbjct 38423 AGGCGCAGGACAAGATGGAGGGTGGATTCCTTCTGGATGTTGTAATCCGCCAGGGTACGC 38482 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 |||| || | |||||| |||||||| || || ||||| || |||| ||||| ||||||| Sbjct 38483 CCGTCCTCAAGCTGCTTGCCGGCAAAAATGAGGCGCTGCTGGTCCGGGGGAATGCCCTCC 38542 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| ||||| || ||| | | || ||||| | ||| ||||||| || Sbjct 38543 TTGTCCTGGATCTTCGCCTTCACATTGTCGATAGTGTCTGAAGACTCGACCTCCAAAGTG 38602 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATC 48767 || || || || || | || || || || ||||||||| Sbjct 38603 ATGGTCTTGCCGGTGAGCGTCTTCACGAAGATCTGCATC 38641 >seq12418 Length=36051 Score = 93.3 bits (102), Expect = 3e-14 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 48539 GCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGA 48598 ||| ||||| || | | ||| | || || ||| |||||| ||||| |||||||||| Sbjct 33323 GCCTCCCCTCAGTCTGAGCACAAGGTGAAGGGTGGACTCTTTCTGAATGTTGTAATCAGC 33382 Query 48599 TAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGG 48658 | | || | || || | |||||| |||||||| || || |||||||| ||| || Sbjct 33383 CAAGGTGCGGCCATCCTCAAGCTGCTTCCCGGCAAAGATGAGACGCTGTTGGTCCAGTGG 33442 Query 48659 AACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCAC 48718 || |||||||||||| |||||| || ||| | | | ||| | ||| | Sbjct 33443 AATGCCCTCCTTGTCCTGAATCTTCGCCTTCACATTGTTGATTG--TGTGAGGACTCAAT 33500 Query 48719 CTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 ||||| || || || ||||| ||||| || | ||||| |||||||| Sbjct 33501 CTCCAGTGTGATGGTCTTTCCAGTCAAGGTCGTCACAAAGATCTGCAT 33548 >seq8841 Length=75027 Score = 86.0 bits (94), Expect = 5e-12 Identities = 152/222 (68%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || || | ||||| || ||||| ||| || || || ||||| || | || | || Sbjct 23442 AGGCGGAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGG 23501 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 |||| || | |||||| ||||| || || || ||||| || |||| || | ||||||| Sbjct 23502 CCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCCGGCGGGATGCCCTCC 23561 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| ||||| || || | | | || || | ||||||||||| ||| Sbjct 23562 TTGTCTTGGATCTTGGCCTTCACGTTGTCGATGGTGTCCGAGGACTCCACCTCCAGCGTG 23621 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATCGTG 48770 || || || ||||||| || || || || ||||||||| || Sbjct 23622 ATGGTCTTCCCCGTCAGGGTCTTCACGAAGATCTGCATCTTG 23663 >seq9492 Length=177167 Score = 84.2 bits (92), Expect = 2e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 || ||||| |||| || |||||||| || || ||| || || || ||||| |||| | Sbjct 137923 CCACCCCTGAGCCTCAGGACCAAATGAAGTGTTGACTCCTTCTGGATGTTGTAGTCAGCT 137982 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 | ||| | || ||||| |||||||| ||||| ||||| | || || || | |||| Sbjct 137983 AATGTTCTCCCATCTTCCAATTGCTTACCAGCAAAAATCAGCCTTTGCTGGTCTGGGGGA 138042 Query 48660 ACGCCCTCCTTGTC 48673 | |||||||||||| Sbjct 138043 ATGCCCTCCTTGTC 138056 >seq11736 Length=148999 Score = 82.4 bits (90), Expect = 6e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 || ||||| || |||| || | || || || ||| || ||||| ||||| |||| Sbjct 10002 CCACCCCTCAGACGCAGGACAAGGTGGAGGGTAGACTCCTTCTGAATGTTGTAGTCAGCC 9943 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 || | || |||| || | ||||| || ||||| || || | ||| || |||| ||| Sbjct 9942 AGGGTGCGGCCGTCCTCTAGTTGCTTGCCAGCAAAGATGAGCCTCTGCTGGTCCGGGGGG 9883 Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719 | |||||||||||| ||||| ||| ||| | | || ||||| ||| ||| Sbjct 9882 ATGCCCTCCTTGTCCTGGATCTTGGCTTTGACATTGTCAATAGTGTCTGAGCTCTCGACC 9823 Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATC 48767 || | || || || || || || | || || ||||| ||||||||| Sbjct 9822 TCGAGAGTGATGGTCTTGCCAGTGAGGGTCTTAACAAAGATCTGCATC 9775 >seq8693 Length=192112 Score = 82.4 bits (90), Expect = 6e-11 Identities = 99/135 (73%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 48539 GCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGA 48598 ||| || || |||| | ||||| || || || ||| || ||||| ||||| |||| Sbjct 111306 GCCACCTCTGAGCCTGAGGACCAAGTGGAGAGTTGACTCCTTCTGAATGTTGTAGTCAGC 111247 Query 48599 TAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGG 48658 || | || | || |||| |||||| || || |||||||| ||||||||||||| || Sbjct 111246 CAGTGTGCGTCCATCCTCCAGCTGCTTGCCAGCGAATATCAGACGCTGTTGATCCGGAGG 111187 Query 48659 AACGCCCTCCTTGTC 48673 || || |||||||| Sbjct 111186 AATCCCTTCCTTGTC 111172 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380856650283828