Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dichanthelium_20oligosanthes_20[genbank_20GCA_5F001633215.2_202016- 09-29] 17,436 sequences; 589,166,415 total letters Query= NC_019443.1 Length=172879 Score E Sequences producing significant alignments: (Bits) Value seq16913 275 7e-69 seq12982 161 1e-34 seq8160 96.9 4e-15 >seq16913 Length=117496 Score = 275 bits (304), Expect = 7e-69 Identities = 510/745 (68%), Gaps = 44/745 (6%) Strand=Plus/Minus Query 162539 TCGGTTGGTTCGGTGTCTTGATGATCCCTTGCTTGCTCGCAGCAGCAACTTGC---TTCA 162595 |||| ||||||||||| |||||||||| | ||| | | | ||||||| | || | Sbjct 95181 TCGGATGGTTCGGTGTTTTGATGATCCGTACCTTATT---AACCGCAACTTCCATATTTA 95125 Query 162596 TCATTGCATTCATTGCAGCACCTCCAGTTGATATCGATGGTATCAGAGAACCTGTTGCAG 162655 | || || ||||| || || ||||| || ||||| |||||||| | || |||||| | Sbjct 95124 TTATCGCCTTCATCGCTGCTCCTCCGGTAGATATTGATGGTATTCGTGAGCCTGTTTCTA 95065 Query 162656 GTTCACTTCTCTATGGTAACAACATCATCTCTGGTGCTGTCGTTCCT------------- 162702 |||| | || ||| | ||||| || || ||||||||| | ||||| Sbjct 95064 GTTCTTTACTTTATAGAAACAATATTATATCTGGTGCTATTATTCCTGCAGAAACTATTA 95005 Query 162703 -----AGTTCAAATGCTATTGGTCTTCACTTCTATCCTATCTGGGAAGCAGCAACTCTTG 162757 | ||| || || || | || || || || || ||| || | ||| || ||| Sbjct 95004 TTCCTACTTCTGTGGCAATCGGATTGCATTTTTACCCAATTTGGAAAACTGCATCTGTTG 94945 Query 162758 ATGAGTGGTTGTATAATGGTGGACCTTTCCAACTTGTAGTCTTCCACTTCCTTATCGGAA 162817 |||| ||||| || ||| |||| |||| | || | || | | || | | || Sbjct 94944 ATGAATGGTTATAAAATTGTGGTCCTTCTGAGCTAATTGTTCTATATTTTTTACTTGGTG 94885 Query 162818 TCACAGCATACTGT---GGTCGTCAGTGGG-AACTTTCTTACCGCTTAGGTATGCGTCCT 162873 | ||| | | | |||||| |||||| ||||| || ||| | |||| ||| ||| Sbjct 94884 T---AGCTTGTTATATGGGTCGTGAGTGGGGAACTTAGTTTCCGTCTGGGTACGCGCCCT 94828 Query 162874 TGGATCTGTGTTGCATACTCTGCACCAGTATCTGCAGCATTC----GCTGTGTTCTTGGT 162929 ||||| | ||||||| || || || | |||||| | | ||||| |||||||| Sbjct 94827 TGGATTGCTATTGCATATTCAGCTCC----TTTGCAGC-TGCTAGTGCTGTTTTCTTGGT 94773 Query 162930 CTATCCTTTCGGTCAAGGTTCTTTCTCTGACGCAATGCCTCTTGGTATTTCTGGTACTTT 162989 || || | |||||||| |||||| || | ||||| | || || ||||||| ||| Sbjct 94772 TTACTCTATTGGTCAAGGGAGTTTCTCCGATGGTGTGCCTTTAGGAATATCTGGTA-TTT 94714 Query 162990 TAACTACATGTTCGTGTTCCAAGCAGAGCACAACATCCTAATGCACCCCTTCCATATGAT 163049 |||| || | || ||||| | ||||||||||||||| ||||| | || || ||| | Sbjct 94713 CAACTTTATAATTGTATTCCAGGTAGAGCACAACATCCTTATGCATTCATTTCACATGTT 94654 Query 163050 TGGAGTCGCAGGTGTATTCGGTGGTTCACTCTTTAGTGCTATGCACGGTTCTCTTGTTAC 163109 || | || ||||||||||| ||||| || || | |||||| ||||| | | || Sbjct 94653 AGGTATAGCTGGTGTATTCGGCGGTTCTTTC---AGCGTTATGCATGGTTCCTTGGCAAC 94597 Query 163110 TTCTTCTCTTATCAGAGAAACTACTGAGCAAGAGTCACAGAACTACGGTTATAAGTTCGG 163169 ||| | | ||||| ||||| ||||| | ||||| || | ||||| || || || Sbjct 94596 CTCTAGTTTGATCAGGGAAACCACTGAAAATGAGTCTGCTAATGAAGGTTACAAATTTGG 94537 Query 163170 ACAAGAAGAAGAGACTTACAACATTGTTGCTGCTCATGGATACTTTGGTCGCTTGATCTT 163229 |||||||||||||| | || || || |||||||| || || |||||||| || ||||| Sbjct 94536 TCAAGAAGAAGAGACATGTAATATCGTGGCTGCTCACGGTTATTTTGGTCGATTAATCTT 94477 Query 163230 CCAGTATGCATCTTTCAACAACTCA 163254 || ||||| |||||||||||||| Sbjct 94476 TCAATATGCTACTTTCAACAACTCA 94452 >seq12982 Length=32303 Score = 161 bits (178), Expect = 1e-34 Identities = 313/454 (69%), Gaps = 6/454 (1%) Strand=Plus/Plus Query 162539 TCGGTTGGTTCGGTGTCTTGATGATCCCTTGCTTGCTCGCAGCAGCAACT-TGCTTCATC 162597 |||| ||||| ||||| |||||||||||| ||| | | ||| | | | ||| || Sbjct 513 TCGGATGGTTTGGTGTTTTGATGATCCCTACCTTATTGACCGCAACTTCCGTACTT-ATT 571 Query 162598 ATTGCATTCATTGCAGCACCTCCAGTTGATATCGATGGTATCAGAGAACCTGTTGCAGGT 162657 || | ||||| || || |||||||| ||||| |||||||| | || |||||| | ||| Sbjct 572 ATCACCTTCATCGCTGCTCCTCCAGTAGATATTGATGGTATTCGTGAGCCTGTTTCTGGT 631 Query 162658 TCACTTCTCTATGGTAACAACATCATCTCTGGTGCTGTCGTTCCTAGTTCAAATG-CTAT 162716 || | | ||||| |||| || |||||||||||| | |||||| || | || | || Sbjct 632 TCTTTAATTTATGGAAACAGTATTATCTCTGGTGCTATTATTCCTACTT-ATGTGACGAT 690 Query 162717 TGGTCTTCACTTCTATCCTATCTGGGAAGCAGCAACTCTTGATGAGTGGTTGTATAATGG 162776 || | || || || || || ||| |||| ||| | ||||||| ||||| || ||||| Sbjct 691 CGGATTGCATTTTTACCCAATTTGGAAAGCTGCATCCGTTGATGAATGGTTATACAATGG 750 Query 162777 TGGACCTTTCCAACTTGTAGTCTTCCACTTCCTTATCGGAATCACAGCATACTGTGG-TC 162835 || |||| | || | || | || ||| | | || | | || | ||| || Sbjct 751 CGGTCCTTATGACCTAATTGTTCTACATTTCTTACTTGGTGTAGCTTGTTA-TATGGATC 809 Query 162836 GTCAGTGGGAACTTTCTTACCGCTTAGGTATGCGTCCTTGGATCTGTGTTGCATACTCTG 162895 || | ||||||||| || || | |||||||| | |||||| ||||||||| || | Sbjct 810 GTGACTGGGAACTTAGTTTCCATCTGGGTATGCGCCTTTGGATTGTTGTTGCATATTCAG 869 Query 162896 CACCAGTATCTGCAGCATTCGCTGTGTTCTTGGTCTATCCTTTCGGTCAAGGTTCTTTCT 162955 | || || | | || ||| | |||||| | || ||| | ||||||| ||| | Sbjct 870 CTCCTGTTGCAGTTGCTACTGCTATTTTCTTGATTTACCCTATTGGTCAAGAAAGTTTTT 929 Query 162956 CTGACGCAATGCCTCTTGGTATTTCTGGTACTTT 162989 |||| | |||||| | || || ||||||||||| Sbjct 930 CTGATGGTATGCCTTTAGGAATATCTGGTACTTT 963 >seq8160 Length=957 Score = 96.9 bits (106), Expect = 4e-15 Identities = 111/148 (75%), Gaps = 1/148 (1%) Strand=Plus/Plus Query 163120 ATCAGAGAAACTACTGAGCAAGAGTCACAGAACTACGGTTATAAGTTCGGACAAGAAGAA 163179 ||||| ||||| | ||| | ||||| || | ||||| || || | |||||||| Sbjct 312 ATCAGGGAAACAA-TGAAAATGAGTCTGCTAATGAGGGTTACAAATTTGATTAAGAAGAA 370 Query 163180 GAGACTTACAACATTGTTGCTGCTCATGGATACTTTGGTCGCTTGATCTTCCAGTATGCA 163239 ||||| || || ||||| |||||||||| || |||||||| || |||||||| ||| | Sbjct 371 GAGACCTATAATATTGTGGCTGCTCATGATTATTTTGGTCGATTAATCTTCCAATATCCT 430 Query 163240 TCTTTCAACAACTCACGTTCACTTCACT 163267 |||||||||||| ||||| | |||| Sbjct 431 AGTTTCAACAACTCTCGTTCTTTACACT 458 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 552964255167840