Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dichanthelium_20oligosanthes_20[genbank_20GCA_5F001633215.2_202016- 09-29] 17,436 sequences; 589,166,415 total letters Query= NC_019444.1 Length=176043 Score E Sequences producing significant alignments: (Bits) Value seq16913 273 2e-68 seq10113 232 8e-56 seq12982 172 6e-38 seq666 141 1e-28 seq12572 111 2e-19 seq8160 82.4 9e-11 >seq16913 Length=117496 Score = 273 bits (302), Expect = 2e-68 Identities = 525/772 (68%), Gaps = 24/772 (3%) Strand=Plus/Minus Query 162892 TTCTGCGAGTGGGTAACTTCTACCAATAACCGCCTCTATGTCGGTTGGTTCGGCGTACTG 162951 |||||| | ||| ||||| ||| | ||||| || || |||| |||||||| || || Sbjct 95221 TTCTGCAACTGGATAACTAGCACCGAAAACCGTCTTTACATCGGATGGTTCGGTGTTTTG 95162 Query 162952 ATGATTCCAACTCTGTTGGCAGCAACTATCTGTTTCATCGTCGCCTTCGTCGCTGCTCCC 163011 ||||| | || | || | |||||| | || || |||||||| |||||||||| Sbjct 95161 ATGATCCGTACCTTATTAACCGCAACTTCCATATTTATTATCGCCTTCATCGCTGCTCCT 95102 Query 163012 CCTGTGGACATTGACGGCATCCGTGAGCCCGTCGCTGGTTCACTCATGTATGGCAACAAC 163071 || || || ||||| || || |||||||| || || |||| | | ||| | ||||| Sbjct 95101 CCGGTAGATATTGATGGTATTCGTGAGCCTGTTTCTAGTTCTTTACTTTATAGAAACAAT 95042 Query 163072 ATCATCTCTGGTGCAGTTGTTCCATC-----------TTCCAAC-------GCAATTGGT 163113 || || |||||||| || |||| | |||| || ||||| || Sbjct 95041 ATTATATCTGGTGCTATTATTCCTGCAGAAACTATTATTCCTACTTCTGTGGCAATCGGA 94982 Query 163114 CTTCACTTCTATCCCATCTGGGAAGCCGCATCACTTGATGAGTGGCTGTATAACGGTGGT 163173 | || || || || || ||| || | ||||| ||||||| ||| | || || ||||| Sbjct 94981 TTGCATTTTTACCCAATTTGGAAAACTGCATCTGTTGATGAATGGTTATAAAATTGTGGT 94922 Query 163174 CCTTTCCAACTCGTAGTCTTTCACTTCCTTATCGGCATCTATGCATATATGGGACGTGAA 163233 |||| | || | || | | || | | || | | |||||||| ||||| Sbjct 94921 CCTTCTGAGCTAATTGTTCTATATTTTTTACTTGGTGTAGCTTGTTATATGGGTCGTGAG 94862 Query 163234 TGGG-AACTTTCATATCGCTTAGGTATGCGCCCCTGGATCTGTGTAGCATACTCTGCACC 163292 |||| ||||| | || | |||| |||||| ||||| | | ||||| || || || Sbjct 94861 TGGGGAACTTAGTTTCCGTCTGGGTACGCGCCCTTGGATTGCTATTGCATATTCAGCTCC 94802 Query 163293 TGTTGCAGCAGCATCCGCAGTCTTCCTGGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGA 163352 | ||||||| || || || ||| |||| || || | |||||||| |||||| || Sbjct 94801 T-TTGCAGCTGCTAGTGCTGTTTTCTTGGTTTACTCTATTGGTCAAGGGAGTTTCTCCGA 94743 Query 163353 CGCAATGCCACTTGGCATCTCTGGCACATTCAACTACATGCTTGTCTTCCAAGCAGAGCA 163412 | |||| | || || ||||| | ||||||| || |||| ||||| | |||||| Sbjct 94742 TGGTGTGCCTTTAGGAATATCTGGTAT-TTCAACTTTATAATTGTATTCCAGGTAGAGCA 94684 Query 163413 CAACATCCTGATGCACCCCTTCCATATGTTGGGAGTCGCTGGTGTCTTCGGTGGATCACT 163472 ||||||||| ||||| | || || ||||| || | |||||||| ||||| || || | Sbjct 94683 CAACATCCTTATGCATTCATTTCACATGTTAGGTATAGCTGGTGTATTCGGCGGTTCTTT 94624 Query 163473 CTTCTCGGCAATGCATGGCAGTCTTGTTACCTCTTCACTCGTCCGTGAGACGACTGAAAC 163532 | | | |||||||| | | |||||| | || | || || ||||||| Sbjct 94623 CAGC---GTTATGCATGGTTCCTTGGCAACCTCTAGTTTGATCAGGGAAACCACTGAAAA 94567 Query 163533 TGAGTCACAAAACTATGGTTACAAGTTTGGTCAAGAAGAAGAGACATACAACATCGTTGC 163592 |||||| || | |||||||| |||||||||||||||||||||| || ||||| || Sbjct 94566 TGAGTCTGCTAATGAAGGTTACAAATTTGGTCAAGAAGAAGAGACATGTAATATCGTGGC 94507 Query 163593 AGCACATGGCTACTTCGGTCGTTTGATCTTCCAATATGCATCATTCAACAAC 163644 || || || || || ||||| || ||||| |||||||| | ||||||||| Sbjct 94506 TGCTCACGGTTATTTTGGTCGATTAATCTTTCAATATGCTACTTTCAACAAC 94455 >seq10113 Length=56568 Score = 232 bits (256), Expect = 8e-56 Identities = 467/686 (68%), Gaps = 5/686 (1%) Strand=Plus/Minus Query 164643 TTTGTTTTTGTGGGGTGGTCTGGATTACTACTTCTTCCCACTGCTTATCTGGCCATTGGC 164702 ||||||||||| | |||||||| || | || |||| ||||||| | || | || Sbjct 48533 TTTGTTTTTGTATGATGGTCTGGCCTATTGCTCTTTCCTTGTGCTTATTTTGCTTTAGGG 48474 Query 164703 GGTTGGCTTACTGGCACAGCTTTTGTCACGAGTTGGTACACCCATGGTCTTGCTTCTTCC 164762 |||||| |||| || || ||||||| || |||||| |||||||| | | | |||| Sbjct 48473 GGTTGGTTTACAGGRACTACTTTTGTAACTTCTTGGTATACCCATGGATTGGATAGTTCC 48414 Query 164763 TATCTTGAAGG-TGCTAACTTTCTCACAGCAGCTGTCTCGACGCCTGCTGATGCTATGGG 164821 ||| | ||||| ||| || || | ||||| || || || |||||| || | | | Sbjct 48413 TATTTGGAAGGATGC-AATTTCTTAACAGCGGCGGTTATCACTCCTGCTAATAGTTTAGC 48355 Query 164822 TCATTCTCTTCTTCTACTTTGGGGTCCTGAGTCTCAGGGGAATTTCCAGCGGTGGTGCCA 164881 || ||| | | ||||| ||||| | || |||||| |||| || || || || Sbjct 48354 ACACTCTTTGTTACTACTATGGGGCCTGGAAGAACAGGGGGATTTTACTCGTTGATGTCA 48295 Query 164882 ACTTGGGGGACTATGGAATTTCGTGGCTCTCCACGGTGCCTTCGCCCTAATTGGTTTCAT 164941 | | || || || |||| ||| || |||||||| || || || ||||| |||||||| Sbjct 48294 ATTAGGTGGTCTGTGGACTTTTGTCGCTCTCCATGGGGCTTTTATGCTAATAGGTTTCAT 48235 Query 164942 GCTCCGCCAGTTTGAGCTGGCAC-GTCTCATTGGTATCCGTCCTTACAATGCTATTGCGT 165000 | | || || ||||| | || | |||| || | || ||||| ||||| ||| | | Sbjct 48234 GTTACGTCAATTTGAACATGCTCAGTCT-GTTCAATTGCGGCCTTATAATGCAATTTCAT 48176 Query 165001 TCTCTGGTCCTATTGCTG-TTTTTGTCAGCGTCTTCCTTATCTACCCACTGGGTCAGTCC 165059 ||||| |||| | || ||||||| || |||||| | || ||| |||| || || Sbjct 48175 TCTCTAGTCCAACCATTGTTTTTTGTTTTTGTATTCCTTGTTTATCCAATGGGACAATCT 48116 Query 165060 AGTTGGTTTTTCGCTCCGTCCTTTGGGGTGGCAGCAATCTTTAGATTCCTGTTGTTCCTT 165119 ||| ||| || | | | ||||| | | || || ||| |||| | | ||| | Sbjct 48115 GGTTAGTTCTTTGTGCTGAGTTTTGGCATAGAAGTTATATTTCAATTCATCCTTTTCTTC 48056 Query 165120 CAAGGATTCCACAACTGGACCCTCAACCCCTTCCATATGATGGGTGTTGCAGGTATCTTG 165179 |||||||| | || ||||| | ||||| || ||||||||||| ||||| || | || Sbjct 48055 CAAGGATTTCCTAATTGGACGTTAAACCCATTTCATATGATGGGGGTTGCCGGAGTATTA 47996 Query 165180 GGAGGAGCATTGCTATCTGCTATTCATGGAGTCACAGTTGAAAATACATTATACGAGGAT 165239 || | ||| |||||| |||| ||||| | || | ||||| || ||| | | ||| Sbjct 47995 GGCGCAGCTCTGCTATGCTCTATCCATGGGGCTACCATAGAAAACACTCTATTCAAAGAT 47936 Query 165240 GGAGAGCAGGCAAATACCTTTAAGGCGTTTGATTCGACACAGGAAGAAGAGACTTATTCT 165299 | || ||||||||||| | || | | | | || || | ||||| |||||||| Sbjct 47935 GATGATGGTGCAAATACCTTCTATGCTTGTAACGCAACTCAAGCTGAAGAAACTTATTCA 47876 Query 165300 ATGGTCACTGCAAACCGCTTCTGGTC 165325 ||| ||||| | ||| |||| ||||| Sbjct 47875 ATGATCACTACTAACAGCTTTTGGTC 47850 Score = 145 bits (160), Expect = 9e-30 Identities = 216/304 (71%), Gaps = 3/304 (1%) Strand=Plus/Minus Query 165321 TGGTCGCAGATCTTCGGCATTGCGTTTTCTAACAAGCGGTGGCTTCATTTTTTCATGTTG 165380 ||||| || || || || || | ||||| || || || ||| | ||||| || ||| | Sbjct 1009 TGGTCCCAAATATTTGGTGTTTCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGCTA 950 Query 165381 TTTGTGCCTGTTATGGGTCTTTGGACATCCTCTATTGGCATTATTGGTCTTGCTCTCAAC 165440 |||| | ||| || || | | || | |||||||| | ||| || ||||| ||| Sbjct 949 CTTGTACTTGTAATCAGTTTATAGATGACTGCTATTGGC-TAGTTGCCCTGGCTCTGAAC 891 Query 165441 CTTCGTGCTTACGATTTCGTGAGTCAGGAGATCAGAGCAGCAGAAGATCCAGAATTTGAG 165500 || |||| || |||||| | ||| | ||| | |||||||||||||| ||||||||| Sbjct 890 CTATGTGCCTATGATTTCTTCC--CAGAAAATCCGTGCAGCAGAAGATCCTGAATTTGAG 833 Query 165501 ACCTTCTACACCAAAAACATCCTATTGAATGAAGGACTACGTGCTTGGTTGGCACCTGCT 165560 || |||||||||||| | || || || ||||| || | | ||| ||| ||||| || Sbjct 832 ACTTTCTACACCAAATATATTCTTTTAAATGAGGGTATTCATGCGTGGATGGCAGCTCAG 773 Query 165561 GATCAACCCCATGAAAACTTTATCTTCCCAGAAGAAGTATTGCCTAGAGGCAACGCCCTT 165620 ||||| || |||||||| |||| ||||| || || || | || | || | ||| || Sbjct 772 GATCAGCCTCATGAAAATCTTATATTCCCTGAGGAGGTTCTACCATGTGGAATCGCTTTT 713 Query 165621 TAAT 165624 |||| Sbjct 712 TAAT 709 >seq12982 Length=32303 Score = 172 bits (190), Expect = 6e-38 Identities = 335/492 (68%), Gaps = 2/492 (0%) Strand=Plus/Plus Query 162892 TTCTGCGAGTGGGTAACTTCTACCAATAACCGCCTCTATGTCGGTTGGTTCGGCGTACTG 162951 |||||| | | | ||||| ||| | |||| || || |||| ||||| || || || Sbjct 473 TTCTGCAACTAGATAACTAGCACCGAACACCGTCTTTACATCGGATGGTTTGGTGTTTTG 532 Query 162952 ATGATTCCAACTCTGTTGGCAGCAACTATCTGTT-TCATCGTCGCCTTCGTCGCTGCTCC 163010 ||||| || || | ||| | |||||| || || | || || ||||| |||||||||| Sbjct 533 ATGATCCCTACCTTATTGACCGCAACT-TCCGTACTTATTATCACCTTCATCGCTGCTCC 591 Query 163011 CCCTGTGGACATTGACGGCATCCGTGAGCCCGTCGCTGGTTCACTCATGTATGGCAACAA 163070 || || || ||||| || || |||||||| || ||||||| | || ||||| |||| Sbjct 592 TCCAGTAGATATTGATGGTATTCGTGAGCCTGTTTCTGGTTCTTTAATTTATGGAAACAG 651 Query 163071 CATCATCTCTGGTGCAGTTGTTCCATCTTCCAACGCAATTGGTCTTCACTTCTATCCCAT 163130 || ||||||||||| || |||| ||| | || || | || || || || || Sbjct 652 TATTATCTCTGGTGCTATTATTCCTACTTATGTGACGATCGGATTGCATTTTTACCCAAT 711 Query 163131 CTGGGAAGCCGCATCACTTGATGAGTGGCTGTATAACGGTGGTCCTTTCCAACTCGTAGT 163190 ||| |||| ||||| ||||||| ||| | || || || ||||||| | || | || Sbjct 712 TTGGAAAGCTGCATCCGTTGATGAATGGTTATACAATGGCGGTCCTTATGACCTAATTGT 771 Query 163191 CTTTCACTTCCTTATCGGCATCTATGCATATATGGGACGTGAATGGGAACTTTCATATCG 163250 | || ||| | | || | | ||||||| ||||| ||||||||| | | Sbjct 772 TCTACATTTCTTACTTGGTGTAGCTTGTTATATGGATCGTGACTGGGAACTTAGTTTCCA 831 Query 163251 CTTAGGTATGCGCCCCTGGATCTGTGTAGCATACTCTGCACCTGTTGCAGCAGCATCCGC 163310 | |||||||||| ||||| ||| ||||| || || |||||||||| || | || Sbjct 832 TCTGGGTATGCGCCTTTGGATTGTTGTTGCATATTCAGCTCCTGTTGCAGTTGCTACTGC 891 Query 163311 AGTCTTCCTGGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGACGCAATGCCACTTGGCAT 163370 | ||| || | || ||| | ||||||| ||| ||||| | ||||| | || || Sbjct 892 TATTTTCTTGATTTACCCTATTGGTCAAGAAAGTTTTTCTGATGGTATGCCTTTAGGAAT 951 Query 163371 CTCTGGCACATT 163382 ||||| || || Sbjct 952 ATCTGGTACTTT 963 >seq666 Length=229199 Score = 141 bits (156), Expect = 1e-28 Identities = 175/237 (74%), Gaps = 2/237 (1%) Strand=Plus/Minus Query 165285 GAAGAGACTTATTCTATGGTCACTGCAAACCGCTTCTGGTCGCAGATCTTCGGCATTGCG 165344 ||||| |||||||| ||||| ||||| | ||||| ||||| || ||||| || |||| Sbjct 152516 GAAGAAACTTATTCAATGGTTACTGCTTATCGCTTTTGGTCTCAAATCTTTGGTGTTGC- 152458 Query 165345 TTTTCT-AACAAGCGGTGGCTTCATTTTTTCATGTTGTTTGTGCCTGTTATGGGTCTTTG 165403 |||||| || || | ||| | ||||| || ||||| ||||| || || | ||| | || Sbjct 152457 TTTTCTCAATAAAGGCTGGTTACATTTCTTTATGTTATTTGTACCCGTCACCGGTTTATG 152398 Query 165404 GACATCCTCTATTGGCATTATTGGTCTTGCTCTCAACCTTCGTGCTTACGATTTCGTGAG 165463 || |||||||| | |||| || ||| | ||||| ||||||| || ||| | Sbjct 152397 GATGAGTGCTATTGGCGTAGTTGGCCTGGCTTTGAACCTACGTGCTTGTGACTTCATTTC 152338 Query 165464 TCAGGAGATCAGAGCAGCAGAAGATCCAGAATTTGAGACCTTCTACACCAAAAACAT 165520 ||||| ||| ||||| |||||||| ||||||||||| ||||| ||||||| || Sbjct 152337 CCAGGAAATCCATGCAGCGGAAGATCCTGAATTTGAGACTTTCTATGCCAAAAATAT 152281 >seq12572 Length=34890 Score = 111 bits (122), Expect = 2e-19 Identities = 348/534 (65%), Gaps = 14/534 (3%) Strand=Plus/Minus Query 164637 GATCGCTTTGTTTTTGTGGGGTGGTCTGGATTACTACTTCTTCCCACTGCTTATCTGGCC 164696 || || || |||||| | ||||| || || | || |||| ||||||| | || Sbjct 27219 GACCGTTTCGTTTTTTTTTTTTGGTCCGGCCTATTGCTCTTTCCTTGTGCTTATTTCGCT 27160 Query 164697 ATTGGCGGTTGGCTTACTGGCACAGCTTTTGTCACGAGTTGGTACACCCATGGTCTTGCT 164756 || |||| |||| || || ||||||| || |||||| || | | | ||| Sbjct 27159 TTTTTTTTTTGGTTTACAGGGACTACTTTTGTAACTTCTTGGTATACTTTTTTTTTGGCT 27100 Query 164757 TCTTCCTATCTTGAAGGTGCTAACTTTCTCACAGCAGCTGTCTCGACGCCTGCTGATGCT 164816 ||||||| | |||||| || || | || | | | || || ||||| || | Sbjct 27099 AGTTCCTATTTGGAAGGTTGCAATTTCTTAACCGTTTTTTTTTCCACTCCTGCCAATAGT 27040 Query 164817 ATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTCTCAGGGGAATTTCCAGCGGTGG 164876 | | || ||| | | ||| ||| || || | |||||| |||| || ||| Sbjct 27039 TTAGCACACTCTTTGTTACTATTTTTTTTCCCGGAAGCACAGGGGGATTTTACTCGTTGG 26980 Query 164877 TGCCAACTTGGGGGACTATGGAATTTCGTGGCTCTCCACGGTGCCTTCGCCCTAATTGGT 164936 || ||| || | |||| ||| || |||||||| || || || || |||||| | Sbjct 26979 TGTCAATTTTTTTTTTTGTGGACTTTTGTCGCTCTCCATGGGGCTTTTGCACTAATTTTT 26920 Query 164937 TTCATGCTCCGCCAGTTTGAGCTGGCACG-TCT---CATTGGTATCCGTCCTTACAATGC 164992 || ||| | || || ||||| || || || ||| || | || | | ||| |||| Sbjct 26919 TTTATGTTACGTCAATTTGAACTTGCTCGGTCTGTTCAATTGTTTTTTT--TTA--ATGC 26864 Query 164993 TATTGCGTTCTCTGGTCCTATTGCTGTTTTTGTCAGCGTCTTCCTTATCTACCCACTGGG 165052 ||| | ||||||||||| | ||||||||||| | |||||||| || |||||||| Sbjct 26863 AATTTCATTCTCTGGTCCGTTCGCTGTTTTTGTTTTTTTTTTCCTTATTTATCCACTGGG 26804 Query 165053 TCAGTCCAGTTGGTTTTTCGCTCCGTCCTTTGGGGTGGCAGCAATCTTTAGAT---TCCT 165109 || || ||||||| || | | | ||||| || ||||| || ||| ||| |||| Sbjct 26803 ACAATCTGGTTGGTTCTTTGTTTTTTTTTTTGGCGTAGCAGCTATATTTCGATTCATCCT 26744 Query 165110 GTTGTTCCTTCAAGGATTCCACAACTGGACCCTCAACCCCTTCCATATGATGGG 165163 || ||| || || || || ||||| | ||||| || ||||||||||| Sbjct 26743 TTTCTTCTTT---TTTTTTCATAATTGGACATTAAACCCATTTCATATGATGGG 26693 >seq8160 Length=957 Score = 82.4 bits (90), Expect = 9e-11 Identities = 89/118 (75%), Gaps = 0/118 (0%) Strand=Plus/Plus Query 163527 TGAAACTGAGTCACAAAACTATGGTTACAAGTTTGGTCAAGAAGAAGAGACATACAACAT 163586 ||||| |||||| || | |||||||| |||| | ||||||||||||| || || || Sbjct 325 TGAAAATGAGTCTGCTAATGAGGGTTACAAATTTGATTAAGAAGAAGAGACCTATAATAT 384 Query 163587 CGTTGCAGCACATGGCTACTTCGGTCGTTTGATCTTCCAATATGCATCATTCAACAAC 163644 || || || |||| || || ||||| || |||||||||||| | ||||||||| Sbjct 385 TGTGGCTGCTCATGATTATTTTGGTCGATTAATCTTCCAATATCCTAGTTTCAACAAC 442 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 563086848467680