Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dichanthelium_20oligosanthes_20[genbank_20GCA_5F001633215.2_202016- 09-29] 17,436 sequences; 589,166,415 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq13858 242 7e-59 seq8389 131 3e-25 seq16195 114 2e-20 seq10755 95.1 2e-14 >seq13858 Length=133588 Score = 242 bits (268), Expect = 7e-59 Identities = 576/864 (67%), Gaps = 21/864 (2%) Strand=Plus/Plus Query 47839 CTGGTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTC 47898 |||||| ||||| || | ||||||||||||||||||||||||| || ||||||| ||| Sbjct 59766 CTGGTACTCCCCGACGCGCTTCTCAAAGAAGTTTGTCTTCCCCTGCAGCGAGATGAGCTC 59825 Query 47899 CATGAAGAGGAAGGGGTTGGGTGTGTTATACACCCGTGTCAGGCCCATCTGTTCCAGCAG 47958 ||| || ||| ||||||| | ||| |||| || | ||| | | ||||| Sbjct 59826 CATCCAGTCGAATGGGTTGGCGGCGTTGTACATCCTCTTGCAGCCGAGCGCCATGAGCAG 59885 Query 47959 GTGATCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATGAGGGA 48018 | | || || ||| |||||||||| | |||||| | ||||||||| | ||| | Sbjct 59886 GCGGTCAGCAACGAACTCGATGTACTGGCTCATGAGCCCGCCGTTCATGCCGACGAGCGC 59945 Query 48019 CACGGGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACAATCTG 48078 || || | || | || ||||| ||| || | ||||| || | || |||| Sbjct 59946 GACCGGGAGCGCGTCGCAGACGAACTCGCGCTCGATGTCGACGGCGTCGGCGACGATCTC 60005 Query 48079 CTTAACGCGGGACTCTGAGGGTTTGTTGCGCAGGTGCTTGGCATAGAGCATGCAGGCAAA 48138 |||||| ||| | | ||| || ||| | | | ||||| | |||||| || Sbjct 60006 GCGGACGCGGTCCTCGTCGAGCTTGCCACGGAGGAGGTCG---TAGAGGAGGCAGGCGAA 60062 Query 48139 GTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAGGCAT 48198 ||| | ||| | ||| ||||| ||| ||||||| ||||||||||| ||| || ||||| Sbjct 60063 GTCGCAGTGGAGGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGGCCCGGCAT 60122 Query 48199 GACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGCCCTC 48258 || || | || ||||||||||| || || ||| ||||| ||||||||||||||||| Sbjct 60123 GAGGCCGCGCTTCTTGAGCCAGAAGATGGCGCAGAAGGAGCCCGAGAAGAAGATGCCCTC 60182 Query 48259 CACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCG-TTCTTGTCTGAGATCCAGG 48317 || ||||| ||| ||| | ||| | |||||| | | | | ||||||| Sbjct 60183 GACGCAGGCGAAGGCGACGAGGCGCTCGGC----GAAGCGCTCCCCGCCGTCGATCCAGC 60238 Query 48318 AAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTATGGCCCGGAAGA--- 48374 | ||||||||| ||||| || | || | || || ||||| ||||||| Sbjct 60239 GCATCGCCCAGTCGGCCTTGCGGCGGACGGCGGGGACGGTGTCGATGGCGCGGAAGAGGC 60298 Query 48375 GCTTCTTGCACTCACCTGCGTCCGCAACATAGGTAGTGAGCAGCTTTGCGTACATCTCAG 48434 | | ||| ||| | |||| | || || |||||| | ||||||||| | Sbjct 60299 GGTCCTT---CTCGGCGCCGTCGCGGATGTACGTCTCCAGCAGCAGCGAGTACATCTCCG 60355 Query 48435 AGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCAAACACCTGCA 48494 |||| | ||||| || ||||||||||| || |||||||| | ||||| ||||||| Sbjct 60356 AGTGGATGTTCTCGATGGCGATCTGGAAGCCATAGAAGGCGCGCGCCTCGGCGACCTGCA 60415 Query 48495 CTTCTGTGGAGAATCTCTCCAGCAGATTCTCATTGACTATCCCATCTGAAGCAGCAAAGA 48554 | || | ||| | || ||||| || || || || || || || |||| Sbjct 60416 CGTCGGACATGAAGCGGGAGGCGAGGTTCTCGAGCACGATGCCGTCGGAGGCGGCGAAGA 60475 Query 48555 AGGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGTGAGAGC---ATTCCAGCCCT 48611 |||| || || || | ||| |||||||||| | ||| ||| || || |||| Sbjct 60476 AGGCGAGCACGTGGGAGATGAAGTGGCGCTCGTCGGGGGAGAGCGCCGAATCCCAGTGGC 60535 Query 48612 GTACGTCTTTGCC--CAGGTCCACTTCTTCCACAGTCCAGAAGGACGCGAGTGCTTTTTT 48669 | |||| ||| |||||||| || || | |||||||||||||| | || || || Sbjct 60536 GCGCGTC--GGCCGAGAGGTCCACCTCCTCGGCGGTCCAGAAGGACGCCACCGCCTTCTT 60593 Query 48670 GTACATGCCCCATATGTCCGGATA 48693 ||| | |||| || | ||| || Sbjct 60594 GTAGAACTCCCAGATCTGCGGGTA 60617 >seq8389 Length=83750 Score = 131 bits (144), Expect = 3e-25 Identities = 325/488 (67%), Gaps = 18/488 (4%) Strand=Plus/Minus Query 48212 TTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGCCCTCCACTGCCGCGAAC 48271 ||||||||||| || || ||| ||||| ||||||||||||||||| || ||||| Sbjct 80423 TTGAGCCAGAAGATGGCGCAGAAGGAGCCCGAGAAGAAGATGCCCTCGACGCAGGCGAAG 80364 Query 48272 GCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTCTGA-GATCCAGGAAAGCGCCCAGTC 48330 ||| ||| | ||| |||| ||| || | | ||||||| | |||||||| Sbjct 80363 GCGACGAGGCGCTCGGCGAA----GCGCTCGCCGCCGTCGATCCAGCGCATGGCCCAGTC 80308 Query 48331 TGCCTTCTTCTTGATGCATGGCATCGTCTCTATGGCCCGGAAGAGC---TTCTTGCACTC 48387 ||||| | || | || | || || ||||| ||||| || | ||| ||| Sbjct 80307 GGCCTTGCGCCGGACGGCGGGGACAGTGTCGATGGCGCGGAACAGGCGGTCCTT---CTC 80251 Query 48388 ACCTGCGTCCGCAACATAGGTAGTGAGCAGCTTTGCGTACATCTCAGAGTGCACATTCTC 48447 | |||| | ||||| ||||||| | ||||||||| ||||| | ||||| Sbjct 80250 GGCGCCGTCGCGGATGTAGGTCTCGAGCAGCAGCGAGTACATCTCCGAGTGGATGTTCTC 80191 Query 48448 TATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCAAACACCTGCACTTCTGTGGAGAA 48507 || ||||||||||| ||||||||||| | |||||| |||||||| || | ||| Sbjct 80190 GATGGCGATCTGGAAGCCGTAGAAGGCGCGGGCCTCGGCGACCTGCACGTCGGACATGAA 80131 Query 48508 TCTCTCCAGCAGATTCTCATTGACTATCCCATCTGAAGCAGCAAAGAAGGCAAGGACATG 48567 | ||| ||||| || || || || || || || |||||||| || || || Sbjct 80130 GCGGGAGGCCAGGTTCTCGAGCACGATGCCGTCGGAGGCGGCGAAGAAGGCGAGCACGTG 80071 Query 48568 TTTAAGGAAATGGCGCTCGTTGTGGGTGAGAGCATTCCAGCCC--TGTACGTCTTTGCC- 48624 | ||| |||||||||| ||| ||||||| | ||| ||| | | | ||| Sbjct 80070 GGAGACGAAGTGGCGCTCGT--CGGGGGAGAGCACCTCGTCCCAGTGTCGGGCGTCGCCG 80013 Query 48625 --CAGGTCCACTTCTTCCACAGTCCAGAAGGACGCGAGTGCTTTTTTGTACATGCCCCAT 48682 |||||||| || || | |||||||||||||| | || || ||||| | |||| Sbjct 80012 GAGAGGTCCACCTCCTCGGCCGTCCAGAAGGACGCCACCGCCTTCTTGTAGAACTCCCAG 79953 Query 48683 ATGTCCGG 48690 || | ||| Sbjct 79952 ATCTGCGG 79945 >seq16195 Length=15917 Score = 114 bits (126), Expect = 2e-20 Identities = 210/308 (68%), Gaps = 3/308 (1%) Strand=Plus/Minus Query 47954 AGCAGGTGATCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATG 48013 |||||| | || ||||| |||||||||| | |||||| ||||||||| | Sbjct 417 AGCAGGCGGTCTACGACGAACTCGATGTACTGGCTCATGAGTCCACCGTTCATGCCGACA 358 Query 48014 AGGGACACGGGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACA 48073 || | ||||| | || | || |||||| ||| | | ||||| || | || Sbjct 357 AGCGCGACGGGGAGCGCGTCGCAGACAAACTCGCGCTCGGTGTTGACGGCGTCGGCGACG 298 Query 48074 ATCTGCTTAACGCGGGACTCTGAGGGTTTGTTGCGCAGGTGCTTGGCATAGAGCATGCAG 48133 |||| ||||||| ||| ||| | || ||| | | | | ||| | |||| Sbjct 297 ATCTCGCGGACGCGGGCCTCGTCAACCTTGCTACGAAGGAGGT---CRTTGAGGAGGCAG 241 Query 48134 GCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCA 48193 || ||||| | ||||| ||| ||||| ||| ||||||| ||||||||||| ||| || Sbjct 240 GCGAAGTCGCAGTGCAGGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGGCCC 181 Query 48194 GGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATG 48253 ||||||| || | || |||||||| || || || ||| ||||| ||||||||||| Sbjct 180 GGCATGAGGCCACGCTTCTTGAGCCAAAAGATGGCGCAGAAGGAGCCCAAGAAGAAGATG 121 Query 48254 CCCTCCAC 48261 ||||| || Sbjct 120 CCCTCTAC 113 >seq10755 Length=49669 Score = 95.1 bits (104), Expect = 2e-14 Identities = 106/139 (76%), Gaps = 2/139 (1%) Strand=Plus/Minus Query 48124 GAGCATGCAGGCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAA 48183 ||| | |||||| ||||| | ||| | ||| || || ||| ||||||| || ||||||| Sbjct 35885 GAGGAGGCAGGCGAAGTCGCAGTGTAGGCCCTCATCGCGGGAGATGAGCTCGATGGAGAA 35826 Query 48184 GCAGAGACCAGGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAG-AGCCAG 48242 | ||| || |||||| | | || ||||||||||| || || || |||| |||| | Sbjct 35825 GGTGAGGCCCAGCATGAGGCTGCGCTTCTTGAGCCAGAAGATGGC-GCAAAAGGAGCCCG 35767 Query 48243 AGAAGAAGATGCCCTCCAC 48261 |||||||||||||||| || Sbjct 35766 AGAAGAAGATGCCCTCTAC 35748 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931329772426240