Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dichanthelium_20oligosanthes_20[genbank_20GCA_5F001633215.2_202016- 09-29] 17,436 sequences; 589,166,415 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq13858 179 7e-40 seq8389 132 9e-26 seq16195 91.5 3e-13 >seq13858 Length=133588 Score = 179 bits (198), Expect = 7e-40 Identities = 564/861 (66%), Gaps = 35/861 (4%) Strand=Plus/Minus Query 25477 ATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGATCT- 25535 || |||||| | ||||||||||| || |||||||||||| ||| | || || Sbjct 60608 ATCTGGGAGTTCTACAAGAAGGCGGTGGCGTCCTTCTGGACCGCCGAGGAGGTGGACCTC 60549 Query 25536 --GGCCAAGGACATGGACGGCTGGTAC---GCTCTATCCAAAGACGAGCAGCATTTTCTC 25590 |||| ||| | | |||| | || || ||| ||||||| || || || Sbjct 60548 TCGGCC---GACGCGCGCCACTGGGATTCGGCGCTCTCCCCCGACGAGCGCCACTTCATC 60492 Query 25591 AAGTACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAG 25650 ||||| | || ||||| || ||||| || || || ||| |||||| || | Sbjct 60491 TCCCACGTGCTCGCCTTCTTCGCCGCCTCCGACGGCATCGTGCTCGAGAACCTCGCCTCC 60432 Query 25651 AGATTCACCAGGGAAGTGCAGTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGATGGCC 25710 | |||| || |||||| || ||||| ||||| || |||||||| ||| Sbjct 60431 CGCTTCATGTCCGACGTGCAGGTCGCCGAGGCGCGCGCCTTCTATGGCTTCCAGATCGCC 60372 Query 25711 ATCGAAAATGTGCACTCTGAGGTGTATGCCAAGCTTCTGATGACGTACATTACAGACGTC 25770 ||||| || | ||||| ||| |||| | ||| ||| ||||||||| |||| | Sbjct 60371 ATCGAGAACATCCACTCGGAGATGTACTCGCTGCTGCTGGAGACGTACATCCGCGACGGC 60312 Query 25771 GCCGAGAGAGATCGGCTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAGGAAGGCG 25830 ||||||| || || || || | |||||||| | | ||| | || | ||||| Sbjct 60311 GCCGAGAAGGACCGCCTCTTCCGCGCCATCGACACCGTCCCCGCCGTCCGCCGCAAGGCC 60252 Query 25831 CGGTGGGCCATGAAGTGGATCAACAGCCAG-AGCGCTACGTTTGGCGAGCGGCTGGTAGC 25889 ||||| ||| |||||| || || | |||||| || |||||| || || || Sbjct 60251 GACTGGGCGATGCGCTGGATCGACGGCGGGGAGCGCTTCGC----CGAGCGCCTCGTCGC 60196 Query 25890 CTTTGC-TGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTT-TGCGGCCATCTTCTGGCTC 25947 ||| || ||| || ||||||||||| ||| || || || |||| |||||||||||||| Sbjct 60195 CTTCGCCTGC-GTCGAGGGCATCTTCTTCTCGGGCTCCTTCTGCG-CCATCTTCTGGCTC 60138 Query 25948 AAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGACGAG 26007 ||| || || |||||| || || ||| ||||||||||||||| | | |||||| Sbjct 60137 AAGAAGCGCGGCCTCATGCCGGGCCTCACCTTCTCCAACGAGCTCATCTCCCGCGACGAG 60078 Query 26008 GGTCTCCACAGAGATTTTGCCTGCCTGCTCTACACGGGCCACTTGCTCCACAAACCTTCT 26067 || |||||| | || || |||||||| |||||| | || | | | | || || Sbjct 60077 GGCCTCCACTGCGACTTCGCCTGCCTCCTCTAC---GACCTCCTCCGTGGC-AAGCTCGA 60022 Query 26068 CAAGAGAC--CGTCTACAGTATCATCAAAGAGGCTGTGGAGATCGAGAAGGAGTTTCNNN 26125 | || ||| |||| | ||| || || || || || |||||| ||||| Sbjct 60021 CGAG-GACCGCGTCCGCGAGATCGTCGCCGACGCCGTCGACATCGAGCGCGAGTTCGTCT 59963 Query 26126 NNNNNNNNNNNNNNNNNNNNNNNNTGGGCATGAACAACAGACTCATGAGCCAATACATTG 26185 | ||||||||| | | ||||||||||| ||||| | Sbjct 59962 GCGACGCGCTCCCGGTCGCGCTCGTCGGCATGAACGGCGGGCTCATGAGCCAGTACATCG 59903 Query 26186 AGTATGTGGCCGACCATCTGCT-GTGCCAGCTGGGACTCGCCAGA--CTCTACAGTACGC 26242 ||| || || |||| ||||| || | ||| || || || ||| | |||| |||| Sbjct 59902 AGTTCGTTGCTGACCGCCTGCTCATGGC-GCTCGG-CT-GCAAGAGGATGTACA--ACGC 59848 Query 26243 --CTAACCCGTTCGACTTTATGGAAAACATATCGTTGGAAGGGAAGACCAACTTCTTTGA 26300 | ||||| ||||||| ||||| ||| ||| || | |||||||| ||||||||||| Sbjct 59847 CGCCAACCCATTCGACTGGATGGAGCTCATCTCGCTGCAGGGGAAGACAAACTTCTTTGA 59788 Query 26301 AAAGAGGGTCGGCGACTATCA 26321 ||| | ||||| || || || Sbjct 59787 GAAGCGCGTCGGGGAGTACCA 59767 >seq8389 Length=83750 Score = 132 bits (146), Expect = 9e-26 Identities = 253/363 (70%), Gaps = 11/363 (3%) Strand=Plus/Plus Query 25595 ACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGAGAT 25654 ||||| | || ||||| || ||||| || || || ||| |||||| ||| | | | Sbjct 80072 ACGTGCTCGCCTTCTTCGCCGCCTCCGACGGCATCGTGCTCGAGAACCTGGCCTCCCGCT 80131 Query 25655 TCACCAGGGAAGTGCAGTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGATGGCCATCG 25714 ||| || |||||| || |||||| |||||||| |||||||| ||||||| Sbjct 80132 TCATGTCCGACGTGCAGGTCGCCGAGGCCCGCGCCTTCTACGGCTTCCAGATCGCCATCG 80191 Query 25715 AAAATGTGCACTCTGAGGTGTATGCCAAGCTTCTGATGACGTACATTACAGACGTCGCCG 25774 | || | ||||| ||| |||| | ||| || ||| ||||| |||| ||||| Sbjct 80192 AGAACATCCACTCGGAGATGTACTCGCTGCTGCTCGAGACCTACATCCGCGACGGCGCCG 80251 Query 25775 AGAGAGATCGGCTGTTTGGTGCCATCGAGCACATACCCAGCA-TCAAGAGGAAGGCGCGG 25833 ||| || || ||||| | |||||||| ||| ||| || || | | ||||| Sbjct 80252 AGAAGGACCGCCTGTTCCGCGCCATCGA-CACTGTCCCCGCCGTCCGGCGCAAGGCCGAC 80310 Query 25834 TGGGCCATGAAGTGGATCAACAGCCA-GAGCGCTACGTTTGGCGAGCGGCTGGTAGCCTT 25892 ||||||||| |||||| || || ||||||| || |||||| || || ||||| Sbjct 80311 TGGGCCATGCGCTGGATCGACGGCGGCGAGCGCTTCGC----CGAGCGCCTCGTCGCCTT 80366 Query 25893 TGC-TGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTT-TGCGGCCATCTTCTGGCTCAAG 25950 || ||| || ||||||||||| ||| || || || ||| |||||||||||||||||| Sbjct 80367 CGCCTGC-GTCGAGGGCATCTTCTTCTCGGGCTCCTTCTGC-GCCATCTTCTGGCTCAAG 80424 Query 25951 CAG 25953 || Sbjct 80425 AAG 80427 >seq16195 Length=15917 Score = 91.5 bits (100), Expect = 3e-13 Identities = 105/139 (76%), Gaps = 2/139 (1%) Strand=Plus/Plus Query 25900 GTGGAGGGCATCTTTTTCAGCGGTTCGTT-TGCGGCCATCTTCTGGCTCAAGCAGAAGGG 25958 || ||||||||||| ||| || || || ||| |||||||| ||||||||| || || Sbjct 113 GTAGAGGGCATCTTCTTCTTGGGCTCCTTCTGC-GCCATCTTTTGGCTCAAGAAGCGTGG 171 Query 25959 GACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGACGAGGGTCTCCACAG 26018 |||||| || || ||| ||||||||||||||| | | |||||||| || ||| | Sbjct 172 CCTCATGCCGGGCCTCACCTTCTCCAACGAGCTCATCTCCCGCGACGAGGGCCTGCACTG 231 Query 26019 AGATTTTGCCTGCCTGCTC 26037 || || |||||||| ||| Sbjct 232 CGACTTCGCCTGCCTCCTC 250 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928642358275840