Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dichanthelium_20oligosanthes_20[genbank_20GCA_5F001633215.2_202016- 09-29] 17,436 sequences; 589,166,415 total letters Query= NC_019516.1 Length=161440 Score E Sequences producing significant alignments: (Bits) Value seq16913 320 2e-82 seq10113 239 5e-58 seq12982 233 2e-56 seq666 167 2e-36 seq12572 116 4e-21 >seq16913 Length=117496 Score = 320 bits (354), Expect = 2e-82 Identities = 517/737 (70%), Gaps = 30/737 (4%) Strand=Plus/Minus Query 8288 TCGGCTGGTTTGGCGTTCTCATGATCCCAACCCTTCTTGCCGCTACAATTTGC---TTCA 8344 |||| ||||| || ||| | ||||||| ||| | | |||| || || | || | Sbjct 95181 TCGGATGGTTCGGTGTTTTGATGATCCGTACCTTATTAACCGCAAC---TTCCATATTTA 95125 Query 8345 TTACCGCATTCGTTGCTGCTCCTCCTGTGGACATCGACGGCATCCGCGAACCAGTTGCTG 8404 ||| ||| ||| | ||||||||||| || || || || || || || || || ||| || Sbjct 95124 TTATCGCCTTCATCGCTGCTCCTCCGGTAGATATTGATGGTATTCGTGAGCCTGTTTCTA 95065 Query 8405 GATCTCTCATGTACGGTAACAACATCATCTCTGGTGCAGTTGTTCC--CAGCT-CTA--- 8458 | ||| | | || | ||||| || || |||||||| || |||| ||| ||| Sbjct 95064 GTTCTTTACTTTATAGAAACAATATTATATCTGGTGCTATTATTCCTGCAGAAACTATTA 95005 Query 8459 -----AC-------GCAATTGGCCTCCACTTCTACCCCATCTGGGAAGCCGCTTCTCTTG 8506 || ||||| || | || || ||||| || ||| || | || ||| ||| Sbjct 95004 TTCCTACTTCTGTGGCAATCGGATTGCATTTTTACCCAATTTGGAAAACTGCATCTGTTG 94945 Query 8507 ATGAGTGGCTCTACAACGGTGGTCCTTACCAGCTTGTAGTTTTCCACTTCCTCCTTGGCG 8566 |||| ||| | || || ||||||||| |||| | ||| | | || | ||||| | Sbjct 94944 ATGAATGGTTATAAAATTGTGGTCCTTCTGAGCTAATTGTTCTATATTTTTTACTTGGTG 94885 Query 8567 TCTTTGCTTATATGGGTCGTGAATGGG-AACTTTCTTACCGCCTTGGCATGCGTCCTTGG 8625 | | ||||||||||||||| |||| ||||| || ||| || || | ||| |||||| Sbjct 94884 TAGCTTGTTATATGGGTCGTGAGTGGGGAACTTAGTTTCCGTCTGGGTACGCGCCCTTGG 94825 Query 8626 ATCTGTGTTGCATACTCTGCTCCTGTTGCCGCTGCTTCTGCTGTATTCCTTGTCTATCCT 8685 || | ||||||| || |||||| |||| |||||| |||||| ||| | || || || Sbjct 94824 ATTGCTATTGCATATTCAGCTCCT-TTGCAGCTGCTAGTGCTGTTTTCTTGGTTTACTCT 94766 Query 8686 TTTGGTCAAGGTTCGTTCTCTGATGGTATGCCTCTTGGTATCTCCGGTACGTTCAACTAT 8745 |||||||||| ||||| |||||| ||||| | || || || |||| ||||||| | Sbjct 94765 ATTGGTCAAGGGAGTTTCTCCGATGGTGTGCCTTTAGGAATATCTGGTAT-TTCAACTTT 94707 Query 8746 ATGCTTGTCTTCCAGGCTGAGCACAACATCCTGATGCACCCCTTCCACATGCTTGGTGTT 8805 || |||| ||||||| |||||||||||||| ||||| | || |||||| | ||| | Sbjct 94706 ATAATTGTATTCCAGGTAGAGCACAACATCCTTATGCATTCATTTCACATGTTAGGTATA 94647 Query 8806 GCTGGTGTCTTCGGCGGATCTCTCTTTTCCGCAATGCATGGTTCACTCGTTACTTCTTCG 8865 |||||||| |||||||| ||| || || ||||||||||| | | || ||| Sbjct 94646 GCTGGTGTATTCGGCGGTTCTTTCAG---CGTTATGCATGGTTCCTTGGCAACCTCTAGT 94590 Query 8866 CTGGTTCGTGAGACCACCGAAACCGAGTCTCAAAACTATGGCTACAAGTTCGGTCAAGAA 8925 || | | || ||||| |||| |||||| || | || ||||| || ||||||||| Sbjct 94589 TTGATCAGGGAAACCACTGAAAATGAGTCTGCTAATGAAGGTTACAAATTTGGTCAAGAA 94530 Query 8926 GAGGAAACTTACAACATTGTTGCCGCTCATGGCTACTTTGGTCGCTTGATCTTCCAATAT 8985 || || || | || || || || ||||| || || |||||||| || ||||| |||||| Sbjct 94529 GAAGAGACATGTAATATCGTGGCTGCTCACGGTTATTTTGGTCGATTAATCTTTCAATAT 94470 Query 8986 GCATCTTTTAACAATTC 9002 || |||| ||||| || Sbjct 94469 GCTACTTTCAACAACTC 94453 >seq10113 Length=56568 Score = 239 bits (264), Expect = 5e-58 Identities = 470/688 (68%), Gaps = 9/688 (1%) Strand=Plus/Minus Query 9851 TTTGTTTTTGTGGGTTGGTCTGGACTACTTCTTTTTCCCACTGCTTATCTTGCAATTGGT 9910 ||||||||||| | |||||||| ||| | || ||||| ||||||| |||| | || Sbjct 48533 TTTGTTTTTGTATGATGGTCTGGCCTATTGCTCTTTCCTTGTGCTTATTTTGCTTTAGGG 48474 Query 9911 GGCTGGCTTACTGGCACTACGTTTGTCACGAGTTGGTACACTCACGGACTTGCAAGTAGT 9970 || ||| |||| || ||||| ||||| || |||||| || || ||| ||| | |||| Sbjct 48473 GGTTGGTTTACAGGRACTACTTTTGTAACTTCTTGGTATACCCATGGA-TTGGA--TAGT 48417 Query 9971 TACC--TTG--AGGGTGCTAATTTCCTTACAGCGGCTGTCTCAACGCCTGCTGATGCTAT 10026 | | ||| ||| ||| |||||| | |||||||| || || |||||| || | | Sbjct 48416 TCCTATTTGGAAGGATGC-AATTTCTTAACAGCGGCGGTTATCACTCCTGCTAATAGTTT 48358 Query 10027 GGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTCTCAGGGAGATTTCGTCCGCTGGAT 10086 | || ||| | | ||||| ||||| | || ||||| ||||| || || Sbjct 48357 AGCACACTCTTTGTTACTACTATGGGGCCTGGAAGAACAGGGGGATTTTACTCGTTGATG 48298 Query 10087 CCAGCTTGGGGGACTCTGGGCTTTTGTGGCGCTCCACGGAGCCTTCGCTTTAATCGGCTT 10146 || | || || || ||| ||||||| || ||||| || || || |||| || || Sbjct 48297 TCAATTAGGTGGTCTGTGGACTTTTGTCGCTCTCCATGGGGCTTTTATGCTAATAGGTTT 48238 Query 10147 TATGTTACGCCAGTTTGAGCTGGCGAGATTAATTGGAATCCGACCTTACAATGCTATCGC 10206 |||||||| || ||||| | || | || | | || ||||| ||||| || | Sbjct 48237 CATGTTACGTCAATTTGAACATGCTCAGTCTGTTCAATTGCGGCCTTATAATGCAATTTC 48178 Query 10207 GTTTTCTGGGCCTATTGCTGTTTTT-GTCAGTGTTTTCCTCATCTATCCACTCGGACAGT 10265 || ||| | || | ||||||| || ||| ||||| | |||||| | ||||| | Sbjct 48177 ATTCTCTAGTCCAACCATTGTTTTTTGTTTTTGTATTCCTTGTTTATCCAATGGGACAAT 48118 Query 10266 CTAGTTGGTTCTTTGCGCCGAGTTTCGGCGTCGCGGCGATTTTCCGCTTCCTTCTCTTCC 10325 || ||| |||||||| || |||||| ||| | | | || || | ||| | || ||| Sbjct 48117 CTGGTTAGTTCTTTGTGCTGAGTTTTGGCATAGAAGTTATATTTCAATTCATCCTTTTCT 48058 Query 10326 TCCAGGGCTTTCATAATTGGACGCTCAATCCCTTCCATATGATGGGAGTTGCTGGTATAC 10385 |||| || |||| |||||||||| | || || || ||||||||||| ||||| || || Sbjct 48057 TCCAAGGATTTCCTAATTGGACGTTAAACCCATTTCATATGATGGGGGTTGCCGGAGTAT 47998 Query 10386 TGGGAGGGGCGCTCCTATCAGCAATCCACGGAGTCACTGTAGAAAACACACTTTATCAAG 10445 | || | || || |||| | ||||| || | || |||||||||| || | ||| Sbjct 47997 TAGGCGCAGCTCTGCTATGCTCTATCCATGGGGCTACCATAGAAAACACTCTATTCAAAG 47938 Query 10446 ATGGCGAACAAGCAAACACTTTCAAAGCTTTTGATAGCACTCAAGAAGAAGAGACCTATT 10505 ||| || ||||| || ||| | |||| | | ||||||| ||||| || |||| Sbjct 47937 ATGATGATGGTGCAAATACCTTCTATGCTTGTAACGCAACTCAAGCTGAAGAAACTTATT 47878 Query 10506 CGATGGTTACTGCTAACCGTTTCTGGTC 10533 | ||| | ||| ||||| | || ||||| Sbjct 47877 CAATGATCACTACTAACAGCTTTTGGTC 47850 Score = 154 bits (170), Expect = 2e-32 Identities = 206/284 (73%), Gaps = 3/284 (1%) Strand=Plus/Minus Query 10529 TGGTCCCAGATATTTGGAATTGCTTTTAGCAATAAACGCTGGCTTCATTTCTTTATGCTG 10588 |||||||| |||||||| || ||||| ||||||||| ||| | |||||||||||||| Sbjct 1009 TGGTCCCAAATATTTGGTGTTTCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGCTA 950 Query 10589 TTTGTACCTGTTATGGGTCTTTGGACCTCTTCTATTGGAATCATTGGTCTTGCTCTCAAT 10648 |||||| ||| || || | | || || ||||||| | ||| || ||||| || Sbjct 949 CTTGTACTTGTAATCAGTTTATAGATGACTGCTATTGGC-TAGTTGCCCTGGCTCTGAAC 891 Query 10649 CTTCGTGCTTACGATTTTGTATCTCAAGAGATCAGGGCGTCAGAAGATCCTGAATTTGAG 10708 || |||| || ||||| | | || | ||| | || |||||||||||||||||||| Sbjct 890 CTATGTGCCTATGATTTCTT--CCCAGAAAATCCGTGCAGCAGAAGATCCTGAATTTGAG 833 Query 10709 ACGTTCTATACGAAGAATATCCTTCTGAACGAAGGTCTTCGTGCATGGATGGCACCAGTT 10768 || ||||| || || |||| ||| | || || ||| ||| ||| ||||||||| | Sbjct 832 ACTTTCTACACCAAATATATTCTTTTAAATGAGGGTATTCATGCGTGGATGGCAGCTCAG 773 Query 10769 GACCAACCACACGAAAGCTTTGTTTTCCCAGAAGAAGTTCTTCC 10812 || || || || |||| || | ||||| || || ||||| || Sbjct 772 GATCAGCCTCATGAAAATCTTATATTCCCTGAGGAGGTTCTACC 729 >seq12982 Length=32303 Score = 233 bits (258), Expect = 2e-56 Identities = 328/455 (72%), Gaps = 8/455 (2%) Strand=Plus/Plus Query 8288 TCGGCTGGTTTGGCGTTCTCATGATCCCAACCCTTCTTG-CCGCTACAATT---TGCTTC 8343 |||| |||||||| ||| | |||||||| ||| || ||| |||| || || | ||| Sbjct 513 TCGGATGGTTTGGTGTTTTGATGATCCCTACC-TTATTGACCGCAAC--TTCCGTACTT- 568 Query 8344 ATTACCGCATTCGTTGCTGCTCCTCCTGTGGACATCGACGGCATCCGCGAACCAGTTGCT 8403 |||| | | ||| | ||||||||||| || || || || || || || || || ||| || Sbjct 569 ATTATCACCTTCATCGCTGCTCCTCCAGTAGATATTGATGGTATTCGTGAGCCTGTTTCT 628 Query 8404 GGATCTCTCATGTACGGTAACAACATCATCTCTGGTGCAGTTGTTCCCAGCTCTAACGCA 8463 || ||| | || || || |||| || ||||||||||| || |||| | | | | Sbjct 629 GGTTCTTTAATTTATGGAAACAGTATTATCTCTGGTGCTATTATTCCTACTTATGTGACG 688 Query 8464 ATTGGCCTCCACTTCTACCCCATCTGGGAAGCCGCTTCTCTTGATGAGTGGCTCTACAAC 8523 || || | || || ||||| || ||| |||| || || ||||||| ||| | ||||| Sbjct 689 ATCGGATTGCATTTTTACCCAATTTGGAAAGCTGCATCCGTTGATGAATGGTTATACAAT 748 Query 8524 GGTGGTCCTTACCAGCTTGTAGTTTTCCACTTCCTCCTTGGCGTCTTTGCTTATATGGGT 8583 || |||||||| | || | ||| | || ||| | ||||| || | |||||||| | Sbjct 749 GGCGGTCCTTATGACCTAATTGTTCTACATTTCTTACTTGGTGTAGCTTGTTATATGGAT 808 Query 8584 CGTGAATGGGAACTTTCTTACCGCCTTGGCATGCGTCCTTGGATCTGTGTTGCATACTCT 8643 ||||| ||||||||| || || || || ||||| | |||||| ||||||||| || Sbjct 809 CGTGACTGGGAACTTAGTTTCCATCTGGGTATGCGCCTTTGGATTGTTGTTGCATATTCA 868 Query 8644 GCTCCTGTTGCCGCTGCTTCTGCTGTATTCCTTGTCTATCCTTTTGGTCAAGGTTCGTTC 8703 ||||||||||| | |||| ||||| | ||| | | || ||| ||||||||| || Sbjct 869 GCTCCTGTTGCAGTTGCTACTGCTATTTTCTTGATTTACCCTATTGGTCAAGAAAGTTTT 928 Query 8704 TCTGATGGTATGCCTCTTGGTATCTCCGGTACGTT 8738 ||||||||||||||| | || || || ||||| || Sbjct 929 TCTGATGGTATGCCTTTAGGAATATCTGGTACTTT 963 >seq666 Length=229199 Score = 167 bits (184), Expect = 2e-36 Identities = 184/245 (75%), Gaps = 0/245 (0%) Strand=Plus/Minus Query 10484 ACTCAAGAAGAAGAGACCTATTCGATGGTTACTGCTAACCGTTTCTGGTCCCAGATATTT 10543 ||||||| ||||| || ||||| |||||||||||| | || || ||||| || || ||| Sbjct 152525 ACTCAAGCTGAAGAAACTTATTCAATGGTTACTGCTTATCGCTTTTGGTCTCAAATCTTT 152466 Query 10544 GGAATTGCTTTTAGCAATAAACGCTGGCTTCATTTCTTTATGCTGTTTGTACCTGTTATG 10603 || |||||||| ||||||| ||||| | |||||||||||| | |||||||| || | Sbjct 152465 GGTGTTGCTTTTCTCAATAAAGGCTGGTTACATTTCTTTATGTTATTTGTACCCGTCACC 152406 Query 10604 GGTCTTTGGACCTCTTCTATTGGAATCATTGGTCTTGCTCTCAATCTTCGTGCTTACGAT 10663 ||| | |||| | ||||||| | |||| || ||| | || || ||||||| || Sbjct 152405 GGTTTATGGATGAGTGCTATTGGCGTAGTTGGCCTGGCTTTGAACCTACGTGCTTGTGAC 152346 Query 10664 TTTGTATCTCAAGAGATCAGGGCGTCAGAAGATCCTGAATTTGAGACGTTCTATACGAAG 10723 || | || || || ||| || | |||||||||||||||||||| |||||| | || Sbjct 152345 TTCATTTCCCAGGAAATCCATGCAGCGGAAGATCCTGAATTTGAGACTTTCTATGCCAAA 152286 Query 10724 AATAT 10728 ||||| Sbjct 152285 AATAT 152281 >seq12572 Length=34890 Score = 116 bits (128), Expect = 4e-21 Identities = 187/269 (70%), Gaps = 0/269 (0%) Strand=Plus/Minus Query 10103 TGGGCTTTTGTGGCGCTCCACGGAGCCTTCGCTTTAATCGGCTTTATGTTACGCCAGTTT 10162 ||| ||||||| || ||||| || || || || |||| ||||||||||| || ||| Sbjct 26961 TGGACTTTTGTCGCTCTCCATGGGGCTTTTGCACTAATTTTTTTTATGTTACGTCAATTT 26902 Query 10163 GAGCTGGCGAGATTAATTGGAATCCGACCTTACAATGCTATCGCGTTTTCTGGGCCTATT 10222 || || || | | || | | || ||||| || | || ||||| || | Sbjct 26901 GAACTTGCTCGGTCTGTTCAATTGTTTTTTTTTAATGCAATTTCATTCTCTGGTCCGTTC 26842 Query 10223 GCTGTTTTTGTCAGTGTTTTCCTCATCTATCCACTCGGACAGTCTAGTTGGTTCTTTGCG 10282 ||||||||||| | ||||||| || |||||||| ||||| ||| |||||||||||| Sbjct 26841 GCTGTTTTTGTTTTTTTTTTCCTTATTTATCCACTGGGACAATCTGGTTGGTTCTTTGTT 26782 Query 10283 CCGAGTTTCGGCGTCGCGGCGATTTTCCGCTTCCTTCTCTTCCTCCAGGGCTTTCATAAT 10342 ||| ||||| || || || || || ||| | || ||| || ||||||||| Sbjct 26781 TTTTTTTTTGGCGTAGCAGCTATATTTCGATTCATCCTTTTCTTCTTTTTTTTTCATAAT 26722 Query 10343 TGGACGCTCAATCCCTTCCATATGATGGG 10371 ||||| | || || || ||||||||||| Sbjct 26721 TGGACATTAAACCCATTTCATATGATGGG 26693 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 516367433184000