Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dichanthelium_20oligosanthes_20[genbank_20GCA_5F001633215.2_202016- 09-29] 17,436 sequences; 589,166,415 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq1299 149 4e-30 seq11297 114 8e-20 seq12936 113 3e-19 seq4406 113 3e-19 seq12074 105 4e-17 seq8403 104 2e-16 seq11548 98.7 6e-15 seq12418 87.8 1e-11 seq11736 86.0 4e-11 seq9858 86.0 4e-11 >seq1299 Length=109948 Score = 149 bits (164), Expect = 4e-30 Identities = 536/825 (65%), Gaps = 30/825 (4%) Strand=Plus/Minus Query 475364 GCAACAGCTGGAGATTCACATCTTGGTGGTGAAGATTTTGATAATAGACTTGTATCATGG 475423 || |||||||| ||| | || |||||||| || || || || || | | ||| Sbjct 46175 GCCACAGCTGGTGATACTCACCTTGGTGGGGAGGACTTCGACAACCGCTTGGTAAACCAC 46116 Query 475424 TGTGTTGAAGATTTCAAGAGGAAAAATAAAGTTGATCTTTC----AACATCTGCTAAAGC 475479 | ||| |||| || ||| ||||||| ||| ||| | | ||| | | || Sbjct 46115 TTTGTGCAAGAGTTTAAGCGGAAAAACAAAAAGGATATCACTGGGAACCCCAGG----GC 46060 Query 475480 ATTAAGACGTCTTAGAACTGCTTGTGAACGTGCTAAGCGAGCTCTTTCTTCTGCTACTCA 475539 || ||| | ||||| ||| | ||||| | |||||| | | |||||||| | | || Sbjct 46059 TTTGAGAAGGCTTAGGACTTCATGTGAGAGGGCTAAGAGGACACTTTCTTCCACAGCGCA 46000 Query 475540 AACTACTGTTGAAGTTGATTCTCTTTTTGAAGGAATTGATTATAATACTCTTATTACAAG 475599 |||||| ||||| |||||||||| | ||| || ||||||| || | || || || Sbjct 45999 AACTACGATTGAAATTGATTCTCTCTATGAGGGCATTGATTTCTATTCCACCATCACCAG 45940 Query 475600 GGCTAAATTTGAAGATATTTGTTCTGATCTCTTTAGAAAAACAATTGAACCCGTTGAACA 475659 || | |||||| || || || || || || || || || || || || | Sbjct 45939 AGCCAGATTTGAGGAACTTAACATGGACCTATTCAGGAAGTGCATGGAGCCTGTGGAG-A 45881 Query 475660 AGTTC-TCAGAGATTCTAAACTTGACAA-ATCACAAGTCCATGAAATTGTTCTTGTAGGA 475717 ||| | | | ||| | || | || || | ||| |||||||| |||| ||||| || Sbjct 45880 AGTGCCTGCGGGATGCCAAGATGGATAAGAGCACT-GTCCATGATGTTGTCCTTGTTGGT 45822 Query 475718 GGTTCAACAAGAATTCCAAAAATAAGAGAAATGCTTTCATCATATTTT-AATGGTAAA-A 475775 ||||| || ||||| || ||| | || |||| || | | || ||||| || | Sbjct 45821 GGTTCTACTAGAATCCCCAAAGTTCAGCAACTGCTG-CAGGACTTCTTCAATGGAAAGGA 45763 Query 475776 AGTTAAATGAAAGTGTA--AATCCTGATGAAGCTGTTGCATATGGAGCTGCTGTCCAAGC 475833 | || || ||| | | |||||||||||||||||||| ||||| ||||| ||||| || Sbjct 45762 ACTT---TGCAAGAGCATCAATCCTGATGAAGCTGTTGCCTATGGCGCTGCGGTCCAGGC 45706 Query 475834 AGCTAT-TTTA----TCAGGTCAATCAGACGAGAAACTAAATAATATTGTACTTGTTGAC 475888 ||||| ||| | ||| |||| ||||| | | | || | || |||| Sbjct 45705 TGCTATCCTTAGTGGTGAGGGCAAT-----GAGAAGGTGCAGGACCTTCTCCTCCTTGAT 45651 Query 475889 GTAACTCCACTTTCATTAGGTCTTGAAACAGTTGGAGGGATTATGACTAATCTTATTGAC 475948 || || ||||| || | ||||||||||| | |||||| | |||||| |||||| Sbjct 45650 GTGACCCCACTGTCTCTTGGTCTTGAAACTGCTGGAGGAGTCATGACTGTCCTTATTCCA 45591 Query 475949 AGAAATACTCCTATCCCATGCAAAAAATCAAAAGTATTTTCCACTTATTCTGATAATCAA 476008 || || || | || ||| ||| || | || || ||||| || |||||||| || Sbjct 45590 AGGAACACCACCATTCCAACCAAGAAGGAGCAGGTCTTCTCCACCTACTCTGATAACCAG 45531 Query 476009 ACAACTGTAACCATCCAAATCTTTGAAGGTGAAAGAAAATTCACTAAAGATAATAACAAA 476068 | ||| ||||| | | ||| || || || | || | || || || Sbjct 45530 CCTGGTGTGTTGATCCAGGTTTATGAGGGCGAGAGGACCCGGACCAGGGACAACAATCTC 45471 Query 476069 CTTGGAACTTTTAATCTTGAAGGTATTCCTCCTGCTCCCAGAGGAGTTCCTCAAATTGAA 476128 ||||| | ||| | || || || || |||||||| || || || ||||| || Sbjct 45470 CTTGGGAAATTTGAGCTCTCTGGAATCCCCCCTGCTCCTAGGGGTGTCCCTCAGATCACT 45411 Query 476129 GTTACTTTTGATATTGATGCAAATGGTATTCTTAATGTTACTGCT 476173 || ||||| |||||||| ||||||||||| || || ||||| Sbjct 45410 GTATGCTTTGACATTGATGCCAATGGTATTCTGAACGTCTCTGCT 45366 Score = 111 bits (122), Expect = 1e-18 Identities = 158/218 (72%), Gaps = 6/218 (3%) Strand=Plus/Minus Query 474662 GAACAAATTTCTTCAATGGTTTTAGCCAAAATGAAACAAACCGCG--AGCTCATATCTTG 474719 ||| |||||||||| |||||| | ||| ||| | | || |||| || |||| Sbjct 46493 GAAGAAATTTCTTCCATGGTTCTTATCAAGATGCGTGAGATTGCTGAAGCT--TACCTTG 46436 Query 474720 GA-CAAGAAGTAACTGATGCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGT 474778 || ||| | ||| |||| || | || ||||| || || || |||||||| || | Sbjct 46435 GATCAACCATTAAGA-ATGCTGTGGTCACCGTTCCTGCTTACTTCAATGATTCCCAGAGG 46377 Query 474779 CAAGCAACTAAAGATGCGGGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAA 474838 || |||||||| ||||| || ||||| ||||| ||||| | |||||||| ||||| Sbjct 46376 CAGGCAACTAAGGATGCTGGTGTTATTGCTGGTCTCAATGTCATGCGTATTATCAATGAG 46317 Query 474839 CCAACAGCAGCCGCACTTGCTTATGGTCTTGATAAGAA 474876 ||||| || || ||| |||| ||||||||||| ||||| Sbjct 46316 CCAACTGCTGCTGCAATTGCCTATGGTCTTGACAAGAA 46279 >seq11297 Length=44683 Score = 114 bits (126), Expect = 8e-20 Identities = 102/128 (80%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 474737 GCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCG 474796 ||||| |||||||||||||| ||||| |||||| |||||||||| || || || ||||| Sbjct 38401 GCAGTGATTACTGTTCCAGCTTATTTCAATGATGCTCAACGTCAGGCCACGAAGGATGCT 38460 Query 474797 GGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTT 474856 || | ||||| || ||| ||||| | || || ||||||||||||||||| || || Sbjct 38461 GGCCGCATTGCTGGCCTTGATGTTGAGAGGATCATCAATGAACCAACAGCAGCTGCTCTG 38520 Query 474857 GCTTATGG 474864 ||||||| Sbjct 38521 TCTTATGG 38528 >seq12936 Length=140512 Score = 113 bits (124), Expect = 3e-19 Identities = 162/222 (73%), Gaps = 6/222 (3%) Strand=Plus/Plus Query 480551 ACGAAGACGGAGTACAAGATGAA--GTGTACTTTCTTTAGAAACATTATAATCAGCTAGA 480608 ||| |||||||| ||||| || | ||| ||| |||| ||| || ||||| || || Sbjct 38875 ACGTAGACGGAGGACAAGGTGCAAGGTGGACTC-CTTTTGAATG-TTGTAATCTGCAAGC 38932 Query 480609 GTTCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATT 480668 || | || || || ||||| ||||| || ||||| ||||| || || ||||||||| Sbjct 38933 GTACGCCCGTCCTCGAGCTGCTTGCCAGCGAAGATAAGGCGTTGCTGGTCTGGAGGAATT 38992 Query 480669 CCTTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTC 480727 ||||||||||| ||||||||| |||||| ||||| || |||| | | | || Sbjct 38993 CCTTCCTTGTCCTGAATCTTTGCCTTGACATTGTCAATCGTGTCAGAAGACTCCA-CCTC 39051 Query 480728 AAGGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 |||||| ||||| || || ||||| ||||| || || || || Sbjct 39052 AAGGGTGATAGTCTTGCCAGTGAGGGTCTTCACAAAGATCTG 39093 >seq4406 Length=98560 Score = 113 bits (124), Expect = 3e-19 Identities = 109/140 (78%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 474737 GCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCG 474796 ||||| |||| || |||||||| || || ||||| ||| | |||||| |||||||| Sbjct 39195 GCAGTGGTTACAGTCCCAGCATACTTCAACGATTCACAAAGGACAGCAACCAAAGATGCT 39254 Query 474797 GGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTT 474856 || | |||||||| || | ||| | |||||||||||||||||||| || || |||| Sbjct 39255 GGCCGTATTGCAGGGCTGGAAGTTCTTCGTATTATTAATGAACCAACTGCTGCATCACTG 39314 Query 474857 GCTTATGGTCTTGATAAGAA 474876 || |||||| |||| ||||| Sbjct 39315 GCCTATGGTTTTGAGAAGAA 39334 >seq12074 Length=29546 Score = 105 bits (116), Expect = 4e-17 Identities = 100/128 (78%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 474737 GCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCG 474796 || || || |||||||||||||| || |||||| |||||||||| || || || ||||| Sbjct 18587 GCGGTGATCACTGTTCCAGCATACTTCAATGATGCTCAACGTCAGGCCACAAAGGATGCA 18646 Query 474797 GGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTT 474856 || | ||||| || ||| ||||| | | || || ||||||||||||||||| || || Sbjct 18647 GGCCGCATTGCTGGCCTTGATGTTGAAAGGATCATCAATGAACCAACAGCAGCTGCTCTG 18706 Query 474857 GCTTATGG 474864 | ||||| Sbjct 18707 TCCTATGG 18714 >seq8403 Length=198720 Score = 104 bits (114), Expect = 2e-16 Identities = 124/166 (75%), Gaps = 2/166 (1%) Strand=Plus/Minus Query 321744 TCAATATTATGTTCCGTAACAATTTCATCAAATGTAAGATTTTTTGCAATAATTAATGGT 321803 ||||| |||| | || ||| ||||| | |||| ||||| |||||| | ||||| Sbjct 80318 TCAATGTTATATGGAGTGACAGTTTCAGGATATGTCAGATTCAAAGCAATACTCCATGGT 80259 Query 321804 AAACCAACTTCATTCAGTGCA-ATATTTGGATCAGATGTGATAACTGTACGACCAGACAT 321862 | || | ||||| || || ||||||||||| | ||||||||| ||||| | || | Sbjct 80258 ACTCCTAATTCAT-CAATGTTTATATTTGGATCTGGTGTGATAACAGTACGGGCTGAAAA 80200 Query 321863 ATCAACACGTTTACCCATAAGATTTCCTCTAATACGACCTTCTTTT 321908 ||||||||| || ||||| | ||||||||||| || ||||||||| Sbjct 80199 ATCAACACGCTTGCCCATCAAGTTTCCTCTAATCCGGCCTTCTTTT 80154 >seq11548 Length=265335 Score = 98.7 bits (108), Expect = 6e-15 Identities = 153/216 (71%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 480555 AGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGTTCTG 480614 || ||||| || || || || || || || || | || || || || || || | | Sbjct 39561 AGGCGGAGCACCAGGTGGAGAGTGCTCTCCTTCTGGATGTTGTAGTCTGCAAGGGTGCGG 39502 Query 480615 TTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCC 480674 ||| || |||||||| ||||||||||| || || || || || || ||||| || ||| Sbjct 39501 CCATCCTCCAGTTGCTTGCCAGCAAAAATCAGGCGCTGCTGGTCCGGGGGAATGCCCTCC 39442 Query 480675 TTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTG-TGTGAAGTTTCAAGGGT 480733 ||||| || ||||| ||||| ||||| || |||| | | | || | ||| ||| Sbjct 39441 TTGTCCTGGATCTTGGCCTTGACGTTGTCAATGGTGTCAGAGCTCTCAACCTCCAA-GGT 39383 Query 480734 AATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 ||| ||||| || ||||| ||||| ||||| || || Sbjct 39382 AATGGTTTTGCCAGTGAGGGTCTTCACGAAGATCTG 39347 >seq12418 Length=36051 Score = 87.8 bits (96), Expect = 1e-11 Identities = 125/176 (71%), Gaps = 0/176 (0%) Strand=Plus/Plus Query 480594 TTATAATCAGCTAGAGTTCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGT 480653 || || ||||| | || | | ||| ||||| ||||| ||||| || || | || || Sbjct 33598 TTGTAGTCAGCCAAGGTACGGCCATCCTCAAGCTGCTTGCCAGCGAAGATCAACCGCTGC 33657 Query 480654 TGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCA 480713 || || ||||| || ||||||||||| | |||||| || ||| || ||||| ||| Sbjct 33658 TGGTCCGGAGGGATACCTTCCTTGTCCTAAATCTTCGCCTTTACATTATCGATAGTGTCA 33717 Query 480714 GTGTGTGAAGTTTCAAGGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 | | |||||| |||||||| || || ||||| ||||| |||||||| || Sbjct 33718 GAGGACTCGACTTCAAGAGTAATAGTCTTGCCAGTGAGGGTCTTGACGAAAATCTG 33773 >seq11736 Length=148999 Score = 86.0 bits (94), Expect = 4e-11 Identities = 150/216 (69%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 480555 AGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGTTCTG 480614 ||||| || ||||||||||| ||| ||| || || || || ||||| | || | Sbjct 10221 AGACGCAGGACAAGATGAAGAGTAGATTCCTTCTGAATGTTGTAGTCAGCCAATGTGCGC 10162 Query 480615 TTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCC 480674 ||| || || ||||| |||||||| || || | || || || || || || || ||| Sbjct 10161 CCATCCTCCAGCTGCTTCCCAGCAAAGATGAGCCTCTGCTGGTCCGGGGGGATGCCCTCC 10102 Query 480675 TTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTG-TGTGAAGTTTCAAGGGT 480733 ||||| |||||||| |||||| || || || || | | | | || || || || Sbjct 10101 TTGTCCTGAATCTTGGCCTTGACATTGTCGATGGTGTCGGAGCTCTCAA-CCTCGAGAGT 10043 Query 480734 AATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 || || || || ||||||||||| ||||| || || Sbjct 10042 GATGGTCTTCCCTGTGAGAGTCTTGACGAAGATCTG 10007 >seq9858 Length=59757 Score = 86.0 bits (94), Expect = 4e-11 Identities = 120/166 (72%), Gaps = 2/166 (1%) Strand=Plus/Minus Query 321744 TCAATATTATGTTCCGTAACAATTTCATCAAATGTAAGATTTTTTGCAATAATTAATGGT 321803 ||||| |||| | || ||| |||| | |||| || || |||||| | |||| Sbjct 37136 TCAATGTTATATGGAGTGACAGTTTCTGGATATGTCAGGTTCAAAGCAATACTCCATGGC 37077 Query 321804 AAACCAACTTCATTCAGTGC-AATATTTGGATCAGATGTGATAACTGTACGACCAGACAT 321862 | ||| | ||||| || || |||||||||||| | ||||||||| || || | || | Sbjct 37076 ACACCCAATTCAT-CAATGTTAATATTTGGATCTGGTGTGATAACAGTGCGGGCTGAGAA 37018 Query 321863 ATCAACACGTTTACCCATAAGATTTCCTCTAATACGACCTTCTTTT 321908 |||||| || || ||||| | |||||||||| || ||||||||| Sbjct 37017 ATCAACTCGCTTCCCCATCAAGTTTCCTCTAACCCGGCCTTCTTTT 36972 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3267431285360528